Wall clock time and date at job start Mon Mar 30 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00058 * 2 1 4 4 H 1.08994 * 109.46973 * 7.78566 * 3 2 1 5 5 C 1.52995 * 109.47272 * 247.78223 * 3 2 1 6 6 N 1.46903 * 109.47323 * 321.27004 * 5 3 2 7 7 C 1.46847 * 111.00363 * 77.56130 * 6 5 3 8 8 C 1.53032 * 109.51670 * 174.16987 * 7 6 5 9 9 C 1.53093 * 109.29024 * 59.18585 * 8 7 6 10 10 C 1.53119 * 109.15352 * 302.33459 * 9 8 7 11 11 H 1.08997 * 109.50422 * 297.71705 * 10 9 8 12 12 C 1.50707 * 109.50139 * 177.59590 * 10 9 8 13 13 H 1.08002 * 119.99906 * 240.19650 * 12 10 9 14 14 C 1.37872 * 119.99887 * 60.20129 * 12 10 9 15 15 N 1.31518 * 119.99922 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00228 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46554 * 59.99747 * 16 14 12 18 18 H 1.48496 * 109.47551 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46975 * 300.00352 * 16 14 12 20 20 C 1.46847 * 110.99820 * 313.35502 * 6 5 3 21 21 C 1.52998 * 109.47141 * 127.78398 * 3 2 1 22 22 C 1.52996 * 109.47122 * 180.92056 * 21 3 2 23 23 C 1.53002 * 109.46880 * 300.91994 * 21 3 2 24 24 H 1.09000 * 109.47250 * 60.21172 * 1 2 3 25 25 H 1.09005 * 109.47412 * 180.21430 * 1 2 3 26 26 H 1.09004 * 109.47213 * 300.20853 * 1 2 3 27 27 H 1.09000 * 109.47626 * 201.26490 * 5 3 2 28 28 H 1.09005 * 109.47331 * 81.26588 * 5 3 2 29 29 H 1.08996 * 109.45966 * 294.18216 * 7 6 5 30 30 H 1.09004 * 109.45857 * 54.15707 * 7 6 5 31 31 H 1.08998 * 109.50486 * 179.11774 * 8 7 6 32 32 H 1.09000 * 109.50336 * 299.23045 * 8 7 6 33 33 H 1.09009 * 109.52482 * 182.43632 * 9 8 7 34 34 H 1.08994 * 109.57991 * 62.27786 * 9 8 7 35 35 H 0.97001 * 119.99501 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.45940 * 305.85441 * 20 6 5 37 37 H 1.08998 * 109.46903 * 65.83116 * 20 6 5 38 38 H 1.09000 * 109.47503 * 60.92098 * 21 3 2 39 39 H 1.09003 * 109.47346 * 179.97438 * 22 21 3 40 40 H 1.08997 * 109.47442 * 299.99574 * 22 21 3 41 41 H 1.09006 * 109.47066 * 60.00347 * 22 21 3 42 42 H 1.08997 * 109.47380 * 60.00613 * 23 21 3 43 43 H 1.09000 * 109.47080 * 179.97438 * 23 21 3 44 44 H 1.08992 * 109.47602 * 299.99880 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2278 2.0515 0.1392 5 6 2.7159 1.5495 -1.3353 6 7 3.3847 0.3154 -1.7685 7 6 2.4195 -0.6355 -2.3346 8 6 3.1662 -1.8431 -2.9055 9 6 3.9748 -2.5112 -1.7903 10 6 4.9383 -1.4865 -1.1854 11 1 5.6400 -1.1515 -1.9492 12 6 5.6967 -2.1196 -0.0473 13 1 5.6178 -1.7093 0.9486 14 6 6.4912 -3.2226 -0.2775 15 7 6.5877 -3.7219 -1.4904 16 14 7.4318 -4.0071 1.1329 17 1 6.4746 -4.4649 2.1720 18 1 8.2061 -5.1685 0.6263 19 1 8.3626 -3.0110 1.7217 20 6 4.1403 -0.2892 -0.6640 21 6 3.0250 1.4119 1.1400 22 6 3.6305 2.8168 1.1543 23 6 2.3238 1.1452 2.4735 24 1 -0.3634 0.5105 -0.8919 25 1 -0.3634 -1.0277 0.0038 26 1 -0.3634 0.5171 0.8881 27 1 3.4557 2.3411 -1.2161 28 1 1.9826 1.8476 -2.0848 29 1 1.7358 -0.9674 -1.5532 30 1 1.8540 -0.1491 -3.1294 31 1 2.4486 -2.5561 -3.3115 32 1 3.8400 -1.5137 -3.6964 33 1 4.5423 -3.3461 -2.2018 34 1 3.2987 -2.8763 -1.0173 35 1 7.1470 -4.4977 -1.6524 36 1 4.8247 0.4489 -0.2454 37 1 3.4487 -0.6229 0.1095 38 1 3.8161 0.6768 0.9921 39 1 4.3532 2.8929 1.9668 40 1 4.1301 3.0069 0.2044 41 1 2.8394 3.5520 1.3023 42 1 1.8925 0.1442 2.4634 43 1 3.0469 1.2206 3.2857 44 1 1.5328 1.8802 2.6215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397644909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:08 Heat of formation + Delta-G solvation = -56.942577 kcal Electronic energy + Delta-G solvation = -21308.037491 eV Core-core repulsion = 18452.923831 eV Total energy + Delta-G solvation = -2855.113660 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06731 -38.29328 -36.09747 -35.22343 -33.26068 -31.56463 -29.27979 -28.07717 -27.25012 -26.79785 -25.03352 -23.15168 -22.53560 -21.01823 -20.10191 -18.43007 -17.61530 -16.71626 -16.57068 -16.44619 -15.84899 -15.34666 -15.22140 -14.70409 -14.36181 -14.19238 -13.97249 -13.91481 -13.70457 -13.19870 -13.00105 -12.82790 -12.79320 -12.73108 -12.52254 -12.33018 -12.22595 -11.92574 -11.74420 -11.58491 -11.43544 -11.32507 -11.25203 -10.76611 -10.53267 -10.36399 -10.25144 -8.62728 -8.03589 -6.17121 1.40965 1.42811 1.50208 2.44871 2.82950 3.22760 3.47218 3.84562 4.03511 4.15206 4.32868 4.39331 4.41791 4.46140 4.53983 4.57770 4.63004 4.68532 4.81860 4.85327 4.87823 4.88902 4.94136 4.95499 5.02710 5.11090 5.12042 5.20833 5.29795 5.31773 5.41419 5.51174 5.52626 5.53315 5.61276 5.68955 6.08342 6.21726 6.28744 6.37765 6.59290 6.65151 6.96957 7.49962 9.00967 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.007630 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.858954 B = 3668.645800 C = 4315.378527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.390 6.390 3 C 0.068 3.932 4 H 0.081 0.919 5 C 0.035 3.965 6 N -0.542 5.542 7 C 0.057 3.943 8 C -0.112 4.112 9 C -0.097 4.097 10 C 0.049 3.951 11 H -0.014 1.014 12 C -0.529 4.529 13 H 0.049 0.951 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.951 3.049 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.271 1.271 20 C 0.087 3.913 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.134 4.134 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.019 0.981 35 H 0.259 0.741 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 11.693 3.381 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C 0.009 3.991 4 H 0.099 0.901 5 C -0.094 4.094 6 N -0.266 5.266 7 C -0.071 4.071 8 C -0.150 4.150 9 C -0.135 4.135 10 C 0.031 3.969 11 H 0.005 0.995 12 C -0.568 4.568 13 H 0.067 0.933 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.777 3.223 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.040 4.040 21 C -0.156 4.156 22 C -0.197 4.197 23 C -0.192 4.192 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.255 11.514 2.906 17.065 hybrid contribution 0.151 -0.847 1.126 1.417 sum -12.104 10.667 4.032 16.630 Atomic orbital electron populations 1.22912 0.80790 1.02955 1.00521 1.88087 1.20405 1.27989 1.94488 1.22925 0.95519 0.85013 0.95635 0.90133 1.22836 0.98093 0.93350 0.95080 1.62067 1.26103 1.05970 1.32433 1.22306 0.93729 0.92423 0.98617 1.21600 0.98378 0.97153 0.97891 1.21361 0.96401 0.99792 0.95952 1.18646 0.92473 0.91826 0.93993 0.99537 1.21485 1.27128 1.12991 0.95169 0.93270 1.25725 0.97583 0.97567 0.97766 1.70054 1.40077 1.24056 1.21545 0.85725 0.78824 0.77990 0.79796 1.19738 1.20940 1.19606 1.22252 0.95050 0.95048 0.91639 1.22083 0.98899 0.99560 0.95106 1.21833 1.00945 0.94927 1.02023 1.21664 1.00238 1.01123 0.96128 0.93173 0.89941 0.93182 0.89208 0.90070 0.91562 0.91271 0.92024 0.94094 0.93074 0.96262 0.93232 0.93366 0.93612 0.90386 0.92477 0.92384 0.91149 0.93887 0.92920 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.30 113.37 1.17 1.68 16 2 O -0.39 -11.40 4.65 -148.98 -0.69 -12.09 16 3 C 0.07 1.74 2.01 30.59 0.06 1.80 16 4 H 0.08 1.63 7.62 -2.39 -0.02 1.61 16 5 C 0.03 0.97 5.73 86.30 0.49 1.46 16 6 N -0.54 -20.18 4.86 -896.36 -4.35 -24.54 16 7 C 0.06 2.02 5.07 86.32 0.44 2.46 16 8 C -0.11 -4.68 6.09 30.64 0.19 -4.49 16 9 C -0.10 -4.96 5.03 30.66 0.15 -4.80 16 10 C 0.05 2.65 2.26 -11.49 -0.03 2.63 16 11 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 12 C -0.53 -30.60 8.56 25.60 0.22 -30.38 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 14 C 0.01 0.68 5.30 84.65 0.45 1.13 16 15 N -0.92 -55.51 11.36 21.45 0.24 -55.27 16 16 Si 0.95 45.26 29.54 68.60 2.03 47.28 16 17 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 C 0.09 3.81 2.70 86.33 0.23 4.05 16 21 C -0.14 -3.76 2.07 -10.79 -0.02 -3.79 16 22 C -0.14 -3.10 8.93 71.98 0.64 -2.46 16 23 C -0.13 -3.31 9.04 71.98 0.65 -2.66 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.09 2.38 5.68 -2.39 -0.01 2.36 16 28 H 0.08 1.94 7.84 -2.38 -0.02 1.93 16 29 H 0.07 2.37 4.83 -2.39 -0.01 2.36 16 30 H 0.07 2.12 7.95 -2.38 -0.02 2.10 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 2.94 6.17 -2.38 -0.01 2.93 16 34 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.05 2.13 6.77 -2.38 -0.02 2.12 16 37 H 0.05 2.06 4.72 -2.39 -0.01 2.05 16 38 H 0.08 2.77 3.70 -2.39 -0.01 2.76 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.32 6.08 -2.39 -0.01 1.31 16 41 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.04 1.19 7.66 -2.39 -0.02 1.17 16 43 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -64.88 319.44 2.82 -62.06 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.95 Total: 15.92 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 4.65 Total: -33.37 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -4.11 Total: -79.81 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.69 Total: -12.09 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.88 2.82 -62.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.115 kcal (2) G-P(sol) polarization free energy of solvation -64.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds