Wall clock time and date at job start Mon Mar 30 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99581 * 2 1 4 4 H 1.09004 * 109.47090 * 31.04737 * 3 2 1 5 5 C 1.53002 * 109.47099 * 151.04552 * 3 2 1 6 6 N 1.46902 * 109.47027 * 300.00367 * 5 3 2 7 7 C 1.46843 * 110.99844 * 294.20360 * 6 5 3 8 8 C 1.53041 * 109.52636 * 174.16067 * 7 6 5 9 9 C 1.53122 * 109.27491 * 59.18163 * 8 7 6 10 10 C 1.53120 * 109.16048 * 302.34964 * 9 8 7 11 11 H 1.08998 * 109.53723 * 297.69290 * 10 9 8 12 12 C 1.50699 * 109.50285 * 177.59748 * 10 9 8 13 13 H 1.08002 * 119.99880 * 269.20076 * 12 10 9 14 14 C 1.37874 * 120.00279 * 89.20115 * 12 10 9 15 15 N 1.31511 * 119.99880 * 353.24316 * 14 12 10 16 16 Si 1.86805 * 119.99946 * 173.24443 * 14 12 10 17 17 H 1.48490 * 109.47173 * 59.99959 * 16 14 12 18 18 H 1.48495 * 109.47237 * 299.99958 * 16 14 12 19 19 H 1.48496 * 109.46832 * 180.02562 * 16 14 12 20 20 C 1.46851 * 111.00108 * 169.99843 * 6 5 3 21 21 C 1.52998 * 109.47526 * 271.04499 * 3 2 1 22 22 C 1.52999 * 109.47422 * 178.32966 * 21 3 2 23 23 C 1.53001 * 109.47046 * 298.33120 * 21 3 2 24 24 H 1.08997 * 109.47559 * 304.82242 * 1 2 3 25 25 H 1.09001 * 109.47181 * 64.82488 * 1 2 3 26 26 H 1.09006 * 109.47006 * 184.82012 * 1 2 3 27 27 H 1.08998 * 109.47224 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.46998 * 60.00130 * 5 3 2 29 29 H 1.09003 * 109.46625 * 294.18358 * 7 6 5 30 30 H 1.09005 * 109.46340 * 54.16273 * 7 6 5 31 31 H 1.08999 * 109.50396 * 179.12147 * 8 7 6 32 32 H 1.09002 * 109.49988 * 299.24619 * 8 7 6 33 33 H 1.08997 * 109.52325 * 182.44091 * 9 8 7 34 34 H 1.09005 * 109.52080 * 62.25156 * 9 8 7 35 35 H 0.96994 * 120.00147 * 2.88057 * 15 14 12 36 36 H 1.09002 * 109.46267 * 65.81748 * 20 6 5 37 37 H 1.09004 * 109.45022 * 305.85095 * 20 6 5 38 38 H 1.08997 * 109.47006 * 58.32671 * 21 3 2 39 39 H 1.09001 * 109.47209 * 65.99435 * 22 21 3 40 40 H 1.09000 * 109.47109 * 185.99668 * 22 21 3 41 41 H 1.08998 * 109.46726 * 305.99540 * 22 21 3 42 42 H 1.09004 * 109.47282 * 59.99778 * 23 21 3 43 43 H 1.09002 * 109.46903 * 179.97438 * 23 21 3 44 44 H 1.08997 * 109.46852 * 299.99645 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3535 1.9955 0.5300 5 6 3.3707 1.2581 0.6983 6 7 3.1946 0.8004 2.0831 7 6 2.4277 1.7772 2.8667 8 6 2.1393 1.2049 4.2564 9 6 3.4633 0.8872 4.9570 10 6 4.2639 -0.0947 4.0970 11 1 3.7096 -1.0278 3.9973 12 6 5.5941 -0.3671 4.7507 13 1 6.4507 0.2441 4.5074 14 6 5.7178 -1.3967 5.6593 15 7 4.6508 -2.0552 6.0561 16 14 7.4009 -1.8561 6.3270 17 1 7.9918 -0.6873 7.0266 18 1 8.2852 -2.2602 5.2046 19 1 7.2635 -2.9867 7.2799 20 6 4.4906 0.5153 2.7120 21 6 2.1935 1.7822 -1.4422 22 6 2.7771 3.1965 -1.4416 23 6 3.1482 0.8369 -2.1743 24 1 -0.3634 0.5868 0.8436 25 1 -0.3633 0.4372 -0.9301 26 1 -0.3633 -1.0241 0.0864 27 1 3.8137 2.2540 0.6988 28 1 4.0273 0.5681 0.1683 29 1 3.0043 2.6970 2.9651 30 1 1.4867 1.9910 2.3598 31 1 1.5836 1.9364 4.8431 32 1 1.5509 0.2925 4.1593 33 1 3.2622 0.4391 5.9300 34 1 4.0351 1.8058 5.0891 35 1 3.7826 -1.8446 5.6783 36 1 5.0577 1.4410 2.8111 37 1 5.0480 -0.1873 2.0924 38 1 1.2283 1.7876 -1.9486 39 1 3.7867 3.1729 -1.0314 40 1 2.8085 3.5770 -2.4626 41 1 2.1517 3.8473 -0.8304 42 1 2.7325 -0.1707 -2.1747 43 1 3.2785 1.1763 -3.2019 44 1 4.1134 0.8315 -1.6679 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397644910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:12 Heat of formation + Delta-G solvation = -67.973194 kcal Electronic energy + Delta-G solvation = -20448.740346 eV Core-core repulsion = 17593.148363 eV Total energy + Delta-G solvation = -2855.591984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.28555 -37.60029 -35.05410 -33.69532 -31.79907 -29.73496 -28.06897 -27.28135 -25.90998 -24.65079 -23.86671 -21.99474 -21.44514 -19.25875 -18.86532 -16.85364 -16.38111 -15.99127 -15.20711 -14.50503 -14.45811 -14.00841 -13.71187 -13.64156 -13.50361 -13.31648 -12.95226 -12.47049 -12.45534 -12.07826 -11.78957 -11.66617 -11.55358 -11.33080 -11.15357 -11.10209 -10.84321 -10.75831 -10.39314 -10.20328 -10.05732 -9.95459 -9.46899 -9.35864 -9.11092 -8.43481 -8.14804 -7.61903 -6.28865 -3.97670 3.47328 3.49653 3.68130 3.92467 4.36055 4.61006 4.70220 4.91353 5.02220 5.21834 5.36256 5.37734 5.43304 5.47272 5.55464 5.58107 5.62079 5.66493 5.75558 5.77925 5.82142 5.87683 5.95385 5.97957 6.08034 6.15417 6.24080 6.29473 6.34357 6.46969 6.54458 6.60126 6.82982 7.02723 7.09449 7.40569 7.53595 7.66018 7.79040 7.84823 8.37755 8.52745 8.96964 9.75064 11.11496 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.005139 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.314166 B = 5447.251336 C = 5699.723347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.360 6.360 3 C 0.099 3.901 4 H 0.056 0.944 5 C 0.055 3.945 6 N -0.530 5.530 7 C 0.063 3.937 8 C -0.118 4.118 9 C -0.108 4.108 10 C 0.038 3.962 11 H 0.041 0.959 12 C -0.596 4.596 13 H 0.045 0.955 14 C 0.022 3.978 15 N -0.911 5.911 16 Si 1.066 2.934 17 H -0.290 1.290 18 H -0.288 1.288 19 H -0.283 1.283 20 C 0.075 3.925 21 C -0.118 4.118 22 C -0.148 4.148 23 C -0.143 4.143 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.021 0.979 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.272 0.728 36 H 0.015 0.985 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 8.798 -13.640 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.041 3.959 4 H 0.074 0.926 5 C -0.073 4.073 6 N -0.254 5.254 7 C -0.065 4.065 8 C -0.156 4.156 9 C -0.147 4.147 10 C 0.018 3.982 11 H 0.059 0.941 12 C -0.634 4.634 13 H 0.063 0.937 14 C -0.183 4.183 15 N -0.547 5.547 16 Si 0.895 3.105 17 H -0.216 1.216 18 H -0.215 1.215 19 H -0.209 1.209 20 C -0.051 4.051 21 C -0.137 4.137 22 C -0.205 4.205 23 C -0.200 4.200 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.033 0.967 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.312 7.163 -12.584 15.796 hybrid contribution -0.580 2.174 -1.096 2.502 sum -6.892 9.337 -13.680 17.939 Atomic orbital electron populations 1.22708 0.82265 1.02405 0.98970 1.88025 1.18386 1.26742 1.94631 1.22207 0.95131 0.85040 0.93549 0.92590 1.22267 0.95476 0.98901 0.90630 1.61956 1.20177 1.42948 1.00354 1.22020 0.96765 0.92837 0.94913 1.21661 0.99433 1.00070 0.94414 1.21782 0.93638 0.99655 0.99579 1.18856 0.95890 0.94368 0.89039 0.94108 1.21887 0.95213 1.18090 1.28243 0.93652 1.25761 1.04340 0.93506 0.94677 1.70774 0.99997 1.43260 1.40683 0.83591 0.74422 0.76278 0.76242 1.21635 1.21502 1.20856 1.22246 0.87064 0.97998 0.97833 1.21605 0.99755 0.95563 0.96817 1.21866 1.01359 0.95674 1.01621 1.21788 0.99412 0.99769 0.99052 0.94369 0.95060 0.89987 0.94244 0.90045 0.96099 0.92578 0.93432 0.91933 0.92879 0.94230 0.91661 0.96709 0.91946 0.91380 0.92134 0.92595 0.92853 0.91833 0.93320 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.87 101.05 1.10 1.50 16 2 O -0.36 -5.51 9.61 -35.23 -0.34 -5.85 16 3 C 0.10 1.34 1.78 -26.73 -0.05 1.30 16 4 H 0.06 0.74 6.02 -51.93 -0.31 0.43 16 5 C 0.06 0.87 3.94 -3.82 -0.02 0.86 16 6 N -0.53 -10.13 4.52 -234.66 -1.06 -11.19 16 7 C 0.06 1.11 5.29 -3.83 -0.02 1.09 16 8 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 9 C -0.11 -2.51 5.23 -26.61 -0.14 -2.65 16 10 C 0.04 0.96 1.93 -91.70 -0.18 0.78 16 11 H 0.04 1.16 6.81 -51.93 -0.35 0.80 16 12 C -0.60 -16.83 8.31 -34.44 -0.29 -17.12 16 13 H 0.05 1.28 7.82 -52.49 -0.41 0.87 16 14 C 0.02 0.63 5.45 -17.82 -0.10 0.53 16 15 N -0.91 -27.76 13.62 55.43 0.75 -27.01 16 16 Si 1.07 25.44 29.91 -169.99 -5.08 20.36 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.08 1.67 4.72 -3.84 -0.02 1.65 16 21 C -0.12 -1.30 2.90 -90.62 -0.26 -1.56 16 22 C -0.15 -1.43 8.71 37.16 0.32 -1.11 16 23 C -0.14 -1.59 8.67 37.16 0.32 -1.27 16 24 H 0.04 0.44 7.97 -51.93 -0.41 0.03 16 25 H 0.03 0.31 7.85 -51.93 -0.41 -0.10 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.58 6.59 -51.93 -0.34 0.24 16 28 H 0.08 1.32 6.24 -51.93 -0.32 1.00 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.88 6.21 -51.93 -0.32 0.55 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.33 7.98 -51.93 -0.41 0.91 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.27 8.29 6.54 -40.82 -0.27 8.02 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 1.42 8.02 -51.93 -0.42 1.00 16 38 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 39 H 0.06 0.61 6.79 -51.93 -0.35 0.26 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.77 7.73 -51.93 -0.40 0.37 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.69 6.39 -51.93 -0.33 0.35 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -30.40 332.98 -8.27 -38.67 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.08 Total: -1.57 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 0.52 Total: -18.44 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.31 Total: -38.19 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.34 Total: -5.85 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.40 -8.27 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.302 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds