Wall clock time and date at job start Mon Mar 30 2020 06:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99581 * 2 1 4 4 H 1.09004 * 109.47090 * 31.04737 * 3 2 1 5 5 C 1.53002 * 109.47099 * 151.04552 * 3 2 1 6 6 N 1.46902 * 109.47027 * 300.00367 * 5 3 2 7 7 C 1.46843 * 110.99844 * 294.20360 * 6 5 3 8 8 C 1.53041 * 109.52636 * 174.16067 * 7 6 5 9 9 C 1.53122 * 109.27491 * 59.18163 * 8 7 6 10 10 C 1.53120 * 109.16048 * 302.34964 * 9 8 7 11 11 H 1.08998 * 109.53723 * 297.69290 * 10 9 8 12 12 C 1.50699 * 109.50285 * 177.59748 * 10 9 8 13 13 H 1.08002 * 119.99880 * 269.20076 * 12 10 9 14 14 C 1.37874 * 120.00279 * 89.20115 * 12 10 9 15 15 N 1.31511 * 119.99880 * 353.24316 * 14 12 10 16 16 Si 1.86805 * 119.99946 * 173.24443 * 14 12 10 17 17 H 1.48490 * 109.47173 * 59.99959 * 16 14 12 18 18 H 1.48495 * 109.47237 * 299.99958 * 16 14 12 19 19 H 1.48496 * 109.46832 * 180.02562 * 16 14 12 20 20 C 1.46851 * 111.00108 * 169.99843 * 6 5 3 21 21 C 1.52998 * 109.47526 * 271.04499 * 3 2 1 22 22 C 1.52999 * 109.47422 * 178.32966 * 21 3 2 23 23 C 1.53001 * 109.47046 * 298.33120 * 21 3 2 24 24 H 1.08997 * 109.47559 * 304.82242 * 1 2 3 25 25 H 1.09001 * 109.47181 * 64.82488 * 1 2 3 26 26 H 1.09006 * 109.47006 * 184.82012 * 1 2 3 27 27 H 1.08998 * 109.47224 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.46998 * 60.00130 * 5 3 2 29 29 H 1.09003 * 109.46625 * 294.18358 * 7 6 5 30 30 H 1.09005 * 109.46340 * 54.16273 * 7 6 5 31 31 H 1.08999 * 109.50396 * 179.12147 * 8 7 6 32 32 H 1.09002 * 109.49988 * 299.24619 * 8 7 6 33 33 H 1.08997 * 109.52325 * 182.44091 * 9 8 7 34 34 H 1.09005 * 109.52080 * 62.25156 * 9 8 7 35 35 H 0.96994 * 120.00147 * 2.88057 * 15 14 12 36 36 H 1.09002 * 109.46267 * 65.81748 * 20 6 5 37 37 H 1.09004 * 109.45022 * 305.85095 * 20 6 5 38 38 H 1.08997 * 109.47006 * 58.32671 * 21 3 2 39 39 H 1.09001 * 109.47209 * 65.99435 * 22 21 3 40 40 H 1.09000 * 109.47109 * 185.99668 * 22 21 3 41 41 H 1.08998 * 109.46726 * 305.99540 * 22 21 3 42 42 H 1.09004 * 109.47282 * 59.99778 * 23 21 3 43 43 H 1.09002 * 109.46903 * 179.97438 * 23 21 3 44 44 H 1.08997 * 109.46852 * 299.99645 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3535 1.9955 0.5300 5 6 3.3707 1.2581 0.6983 6 7 3.1946 0.8004 2.0831 7 6 2.4277 1.7772 2.8667 8 6 2.1393 1.2049 4.2564 9 6 3.4633 0.8872 4.9570 10 6 4.2639 -0.0947 4.0970 11 1 3.7096 -1.0278 3.9973 12 6 5.5941 -0.3671 4.7507 13 1 6.4507 0.2441 4.5074 14 6 5.7178 -1.3967 5.6593 15 7 4.6508 -2.0552 6.0561 16 14 7.4009 -1.8561 6.3270 17 1 7.9918 -0.6873 7.0266 18 1 8.2852 -2.2602 5.2046 19 1 7.2635 -2.9867 7.2799 20 6 4.4906 0.5153 2.7120 21 6 2.1935 1.7822 -1.4422 22 6 2.7771 3.1965 -1.4416 23 6 3.1482 0.8369 -2.1743 24 1 -0.3634 0.5868 0.8436 25 1 -0.3633 0.4372 -0.9301 26 1 -0.3633 -1.0241 0.0864 27 1 3.8137 2.2540 0.6988 28 1 4.0273 0.5681 0.1683 29 1 3.0043 2.6970 2.9651 30 1 1.4867 1.9910 2.3598 31 1 1.5836 1.9364 4.8431 32 1 1.5509 0.2925 4.1593 33 1 3.2622 0.4391 5.9300 34 1 4.0351 1.8058 5.0891 35 1 3.7826 -1.8446 5.6783 36 1 5.0577 1.4410 2.8111 37 1 5.0480 -0.1873 2.0924 38 1 1.2283 1.7876 -1.9486 39 1 3.7867 3.1729 -1.0314 40 1 2.8085 3.5770 -2.4626 41 1 2.1517 3.8473 -0.8304 42 1 2.7325 -0.1707 -2.1747 43 1 3.2785 1.1763 -3.2019 44 1 4.1134 0.8315 -1.6679 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397644910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:11 Heat of formation + Delta-G solvation = -86.835706 kcal Electronic energy + Delta-G solvation = -20449.558286 eV Core-core repulsion = 17593.148363 eV Total energy + Delta-G solvation = -2856.409923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55956 -39.04125 -36.15898 -35.47123 -33.51491 -31.57585 -29.27281 -28.11314 -26.96786 -26.60631 -25.22486 -23.66285 -23.04667 -20.65379 -20.27845 -18.84917 -17.44161 -17.32766 -16.39987 -15.99142 -15.74651 -15.62903 -15.36875 -15.09550 -14.92000 -14.45024 -14.07129 -13.77198 -13.73627 -13.61972 -13.44856 -13.15738 -12.83354 -12.61179 -12.50754 -12.17788 -12.06267 -12.03038 -11.93123 -11.82550 -11.71362 -11.45511 -11.26290 -11.05196 -10.58304 -10.29655 -10.23684 -9.12261 -8.59647 -6.28675 1.53011 1.61450 1.80437 2.58230 2.91022 3.00049 3.23971 3.74690 3.92121 4.02520 4.07188 4.14103 4.23489 4.31169 4.39987 4.43706 4.48412 4.56309 4.57574 4.64660 4.73156 4.75253 4.78791 4.80043 4.88045 4.93997 4.94733 5.01175 5.02354 5.06992 5.18894 5.19961 5.22728 5.40913 5.44209 5.55172 5.75963 5.98457 6.23657 6.28091 6.32481 6.47414 6.69310 7.52349 8.80547 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.005139 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.314166 B = 5447.251336 C = 5699.723347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.392 6.392 3 C 0.102 3.898 4 H 0.064 0.936 5 C 0.056 3.944 6 N -0.544 5.544 7 C 0.066 3.934 8 C -0.111 4.111 9 C -0.100 4.100 10 C 0.033 3.967 11 H 0.002 0.998 12 C -0.608 4.608 13 H 0.043 0.957 14 C -0.030 4.030 15 N -0.937 5.937 16 Si 1.113 2.887 17 H -0.271 1.271 18 H -0.272 1.272 19 H -0.285 1.285 20 C 0.090 3.910 21 C -0.112 4.112 22 C -0.146 4.146 23 C -0.142 4.142 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.023 0.977 34 H 0.039 0.961 35 H 0.258 0.742 36 H 0.015 0.985 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 10.664 -14.997 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.311 6.311 3 C 0.044 3.956 4 H 0.082 0.918 5 C -0.072 4.072 6 N -0.268 5.268 7 C -0.062 4.062 8 C -0.148 4.148 9 C -0.138 4.138 10 C 0.014 3.986 11 H 0.021 0.979 12 C -0.647 4.647 13 H 0.061 0.939 14 C -0.229 4.229 15 N -0.574 5.574 16 Si 0.935 3.065 17 H -0.196 1.196 18 H -0.197 1.197 19 H -0.210 1.210 20 C -0.037 4.037 21 C -0.131 4.131 22 C -0.203 4.203 23 C -0.199 4.199 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.660 9.056 -13.967 17.929 hybrid contribution -0.519 1.596 -0.720 1.827 sum -7.179 10.652 -14.688 19.512 Atomic orbital electron populations 1.22847 0.80666 1.02957 1.00229 1.87984 1.20274 1.27896 1.94920 1.22229 0.93626 0.84699 0.95021 0.91789 1.22348 0.97226 0.99160 0.88438 1.61867 1.18355 1.44587 1.02021 1.22048 0.97953 0.92381 0.93789 1.21589 0.97012 1.00538 0.95698 1.21577 0.95706 0.98494 0.98053 1.18810 0.94665 0.93636 0.91484 0.97930 1.22275 0.96342 1.17993 1.28077 0.93913 1.27226 1.07034 0.93521 0.95072 1.70899 1.00027 1.44530 1.41979 0.82989 0.70639 0.76572 0.76298 1.19637 1.19712 1.21047 1.21867 0.88757 0.97296 0.95818 1.21565 1.00426 0.96140 0.94961 1.21854 1.00891 0.94759 1.02801 1.21770 0.98830 0.99189 1.00127 0.94087 0.92867 0.89794 0.92771 0.91158 0.95204 0.89636 0.90373 0.93226 0.95845 0.94171 0.93204 0.96656 0.93409 0.90087 0.92863 0.91029 0.92112 0.93333 0.91506 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.87 113.37 1.23 1.87 16 2 O -0.39 -11.47 9.61 -148.98 -1.43 -12.90 16 3 C 0.10 2.55 1.78 30.59 0.05 2.60 16 4 H 0.06 1.48 6.02 -2.38 -0.01 1.47 16 5 C 0.06 1.68 3.94 86.30 0.34 2.02 16 6 N -0.54 -20.39 4.52 -896.34 -4.05 -24.44 16 7 C 0.07 2.18 5.29 86.33 0.46 2.64 16 8 C -0.11 -4.14 6.09 30.65 0.19 -3.95 16 9 C -0.10 -4.71 5.23 30.68 0.16 -4.55 16 10 C 0.03 1.75 1.93 -11.49 -0.02 1.73 16 11 H 0.00 0.15 6.81 -2.39 -0.02 0.13 16 12 C -0.61 -35.19 8.31 25.60 0.21 -34.97 16 13 H 0.04 2.44 7.82 -2.91 -0.02 2.41 16 14 C -0.03 -1.79 5.45 84.65 0.46 -1.32 16 15 N -0.94 -59.02 13.62 21.45 0.29 -58.73 16 16 Si 1.11 51.46 29.91 68.60 2.05 53.52 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 C 0.09 4.05 4.72 86.32 0.41 4.46 16 21 C -0.11 -2.16 2.90 -10.79 -0.03 -2.19 16 22 C -0.15 -2.35 8.71 71.98 0.63 -1.72 16 23 C -0.14 -2.93 8.67 71.98 0.62 -2.30 16 24 H 0.04 0.86 7.97 -2.39 -0.02 0.84 16 25 H 0.05 0.92 7.85 -2.39 -0.02 0.90 16 26 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.05 1.48 6.59 -2.39 -0.02 1.46 16 28 H 0.07 2.26 6.24 -2.38 -0.01 2.25 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.09 2.38 6.21 -2.38 -0.01 2.36 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.02 1.20 7.98 -2.39 -0.02 1.18 16 34 H 0.04 1.84 8.14 -2.38 -0.02 1.83 16 35 H 0.26 16.53 6.54 -92.71 -0.61 15.93 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 2.23 8.02 -2.38 -0.02 2.21 16 38 H 0.08 1.40 7.85 -2.39 -0.02 1.38 16 39 H 0.05 0.94 6.79 -2.39 -0.02 0.92 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.05 1.14 7.73 -2.39 -0.02 1.12 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.05 1.08 6.39 -2.39 -0.02 1.07 16 Total: -1.00 -67.30 332.98 2.66 -64.64 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.10 Total: 13.61 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 4.71 Total: -35.70 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -3.76 Total: -83.17 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.43 Total: -12.90 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.52 kcal Total: -67.30 2.66 -64.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.198 kcal (2) G-P(sol) polarization free energy of solvation -67.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds