Wall clock time and date at job start Mon Mar 30 2020 06:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99955 * 2 1 4 4 H 1.09000 * 109.47012 * 326.69715 * 3 2 1 5 5 C 1.53000 * 109.47408 * 206.69516 * 3 2 1 6 6 N 1.46902 * 109.46682 * 64.99903 * 5 3 2 7 7 C 1.46848 * 110.99976 * 66.05279 * 6 5 3 8 8 C 1.53040 * 109.52634 * 185.83835 * 7 6 5 9 9 C 1.53117 * 109.27376 * 300.81661 * 8 7 6 10 10 C 1.53124 * 109.16138 * 57.65414 * 9 8 7 11 11 H 1.09000 * 109.50405 * 62.32436 * 10 9 8 12 12 C 1.50701 * 109.50109 * 182.40330 * 10 9 8 13 13 H 1.08005 * 120.00196 * 119.99967 * 12 10 9 14 14 C 1.37871 * 120.00503 * 299.99502 * 12 10 9 15 15 N 1.31517 * 119.99754 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00607 * 179.72523 * 14 12 10 17 17 H 1.48497 * 109.46914 * 90.00272 * 16 14 12 18 18 H 1.48500 * 109.47510 * 210.00294 * 16 14 12 19 19 H 1.48500 * 109.46776 * 330.00619 * 16 14 12 20 20 C 1.46853 * 110.99957 * 190.25345 * 6 5 3 21 21 C 1.53004 * 109.46977 * 86.69702 * 3 2 1 22 22 C 1.52997 * 109.46962 * 63.30341 * 21 3 2 23 23 C 1.52999 * 109.47082 * 183.30421 * 21 3 2 24 24 H 1.08997 * 109.47041 * 295.76172 * 1 2 3 25 25 H 1.09004 * 109.46818 * 55.76355 * 1 2 3 26 26 H 1.09003 * 109.46736 * 175.76025 * 1 2 3 27 27 H 1.08994 * 109.47047 * 305.00176 * 5 3 2 28 28 H 1.09002 * 109.47309 * 184.99867 * 5 3 2 29 29 H 1.08999 * 109.46792 * 65.81642 * 7 6 5 30 30 H 1.08999 * 109.45192 * 305.84369 * 7 6 5 31 31 H 1.08989 * 109.50431 * 180.87694 * 8 7 6 32 32 H 1.08997 * 109.50071 * 60.75196 * 8 7 6 33 33 H 1.08997 * 109.52736 * 297.74762 * 9 8 7 34 34 H 1.08999 * 109.57746 * 177.58471 * 9 8 7 35 35 H 0.96998 * 120.00237 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.45636 * 54.14675 * 20 6 5 37 37 H 1.08994 * 109.46265 * 294.18468 * 20 6 5 38 38 H 1.09004 * 109.47062 * 303.30066 * 21 3 2 39 39 H 1.09005 * 109.47022 * 60.00271 * 22 21 3 40 40 H 1.09007 * 109.46830 * 179.97438 * 22 21 3 41 41 H 1.08996 * 109.47643 * 299.99753 * 22 21 3 42 42 H 1.09009 * 109.47151 * 53.92555 * 23 21 3 43 43 H 1.08995 * 109.47312 * 173.91949 * 23 21 3 44 44 H 1.08999 * 109.47393 * 293.92708 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3733 1.9867 -0.5643 5 6 3.3950 1.2473 -0.6480 6 7 3.2577 0.8830 -2.0645 7 6 2.5651 1.9385 -2.8146 8 6 2.3112 1.4651 -4.2477 9 6 3.6488 1.1328 -4.9147 10 6 4.3717 0.0662 -4.0874 11 1 3.7753 -0.8459 -4.0687 12 6 5.7156 -0.2240 -4.7047 13 1 6.6183 -0.0616 -4.1344 14 6 5.7928 -0.6969 -5.9975 15 7 4.6936 -0.8944 -6.6922 16 14 7.4588 -1.0494 -6.7653 17 1 7.8422 -2.4576 -6.4913 18 1 7.3833 -0.8335 -8.2326 19 1 8.4753 -0.1372 -6.1824 20 6 4.5659 0.5802 -2.6592 21 6 2.1417 1.8052 1.4401 22 6 3.1010 0.8953 2.2100 23 6 2.6872 3.2346 1.4362 24 1 -0.3633 0.4466 0.9255 25 1 -0.3633 0.5782 -0.8496 26 1 -0.3633 -1.0249 -0.0760 27 1 4.0036 0.5006 -0.1381 28 1 3.8746 2.2229 -0.5686 29 1 3.1829 2.8363 -2.8328 30 1 1.6137 2.1620 -2.3322 31 1 1.8111 2.2545 -4.8085 32 1 1.6821 0.5752 -4.2308 33 1 4.2632 2.0317 -4.9667 34 1 3.4710 0.7544 -5.9213 35 1 4.7479 -1.2268 -7.6018 36 1 5.0676 -0.1826 -2.0637 37 1 5.1743 1.4843 -2.6780 38 1 1.1633 1.7911 1.9204 39 1 4.0794 0.9096 1.7297 40 1 3.1950 1.2516 3.2359 41 1 2.7124 -0.1230 2.2129 42 1 2.0624 3.8603 0.7987 43 1 2.6795 3.6293 2.4521 44 1 3.7083 3.2328 1.0548 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397644911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:14 Heat of formation + Delta-G solvation = -62.731097 kcal Electronic energy + Delta-G solvation = -20406.241866 eV Core-core repulsion = 17550.877197 eV Total energy + Delta-G solvation = -2855.364669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.21116 -37.46651 -34.99519 -33.48564 -31.59633 -29.86807 -28.01849 -27.24725 -25.85394 -24.92234 -23.92350 -21.80282 -21.28251 -19.19503 -18.53444 -16.57470 -16.34836 -15.78739 -15.17603 -14.58127 -14.42364 -14.13042 -13.90912 -13.42637 -13.29931 -12.99836 -12.87148 -12.43994 -12.33452 -12.12962 -11.79758 -11.66452 -11.42577 -11.15103 -11.05727 -10.91143 -10.81603 -10.70141 -10.61577 -10.26559 -9.99930 -9.78891 -9.40908 -9.26315 -8.91727 -8.63893 -8.24525 -7.51641 -5.92101 -3.98032 3.34290 3.40713 3.43708 3.97095 4.39395 4.55191 4.74447 4.96953 5.05986 5.27282 5.37691 5.41598 5.43086 5.53718 5.58628 5.66106 5.70251 5.74683 5.81544 5.83824 5.88250 5.96067 6.01144 6.11496 6.14418 6.27079 6.31914 6.37106 6.47254 6.58932 6.76855 6.81365 7.04460 7.28739 7.42676 7.49516 7.75573 7.81335 7.92834 8.16220 8.24183 8.54607 9.06187 9.65903 11.13904 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030736 B = 0.004990 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.779857 B = 5609.697282 C = 5870.057072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.099 3.901 4 H 0.058 0.942 5 C 0.056 3.944 6 N -0.530 5.530 7 C 0.061 3.939 8 C -0.116 4.116 9 C -0.110 4.110 10 C 0.055 3.945 11 H 0.035 0.965 12 C -0.513 4.513 13 H 0.053 0.947 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.070 3.930 21 C -0.119 4.119 22 C -0.143 4.143 23 C -0.148 4.148 24 H 0.031 0.969 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.020 0.980 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.028 0.972 34 H 0.090 0.910 35 H 0.259 0.741 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 6.610 14.064 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.040 3.960 4 H 0.076 0.924 5 C -0.072 4.072 6 N -0.254 5.254 7 C -0.067 4.067 8 C -0.154 4.154 9 C -0.148 4.148 10 C 0.036 3.964 11 H 0.053 0.947 12 C -0.552 4.552 13 H 0.071 0.929 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.057 4.057 21 C -0.139 4.139 22 C -0.200 4.200 23 C -0.205 4.205 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.459 5.959 13.847 16.820 hybrid contribution 1.120 0.834 -0.391 1.450 sum -6.340 6.793 13.457 16.353 Atomic orbital electron populations 1.22700 0.82266 1.02358 0.99030 1.88009 1.18433 1.26926 1.94651 1.22228 0.95249 0.84963 0.93514 0.92402 1.22237 0.95003 0.99534 0.90416 1.61929 1.22502 1.40843 1.00148 1.22068 0.96953 0.92078 0.95557 1.21657 1.00311 0.99827 0.93609 1.21643 0.92432 0.98182 1.02530 1.18656 0.95673 0.94517 0.87550 0.94719 1.21160 0.92362 1.43340 0.98323 0.92907 1.24928 0.96230 0.95478 0.97199 1.69896 1.26610 1.45877 1.10397 0.86640 0.84617 0.78611 0.78365 1.20720 1.21317 1.20059 1.22289 0.86744 0.98028 0.98647 1.21622 0.99810 0.95533 0.96888 1.21787 0.99407 0.99942 0.98877 1.21871 1.01523 0.95571 1.01561 0.95077 0.94284 0.90027 0.90160 0.94194 0.96166 0.92821 0.93751 0.92106 0.95283 0.89145 0.93125 0.92320 0.96565 0.91396 0.92313 0.93363 0.91884 0.92809 0.92651 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.84 101.05 1.10 1.49 16 2 O -0.36 -5.54 9.77 -35.23 -0.34 -5.89 16 3 C 0.10 1.35 1.85 -26.73 -0.05 1.30 16 4 H 0.06 0.79 5.86 -51.93 -0.30 0.49 16 5 C 0.06 0.89 3.86 -3.82 -0.01 0.87 16 6 N -0.53 -10.22 4.60 -234.67 -1.08 -11.30 16 7 C 0.06 1.11 5.30 -3.83 -0.02 1.09 16 8 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 9 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 10 C 0.05 1.41 2.26 -91.69 -0.21 1.20 16 11 H 0.03 1.00 8.14 -51.93 -0.42 0.57 16 12 C -0.51 -14.32 8.56 -34.44 -0.29 -14.62 16 13 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 14 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -25.74 11.35 55.43 0.63 -25.11 16 16 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.07 1.54 4.68 -3.83 -0.02 1.52 16 21 C -0.12 -1.32 2.86 -90.62 -0.26 -1.58 16 22 C -0.14 -1.57 8.64 37.16 0.32 -1.25 16 23 C -0.15 -1.45 8.76 37.16 0.33 -1.13 16 24 H 0.03 0.31 7.64 -51.93 -0.40 -0.09 16 25 H 0.04 0.46 7.99 -51.93 -0.41 0.04 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.30 6.50 -51.93 -0.34 0.96 16 28 H 0.04 0.59 6.39 -51.93 -0.33 0.26 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.86 6.13 -51.93 -0.32 0.54 16 31 H 0.04 0.80 8.14 -51.94 -0.42 0.37 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.06 1.29 8.01 -51.93 -0.42 0.87 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.71 7.63 -51.93 -0.40 0.31 16 39 H 0.06 0.67 6.48 -51.93 -0.34 0.34 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.75 7.77 -51.93 -0.40 0.35 16 42 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.62 6.72 -51.93 -0.35 0.27 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -29.20 331.37 -8.43 -37.63 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -8.09 Total: -2.10 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 0.49 Total: -14.73 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.45 Total: -36.41 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.34 Total: -5.89 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.20 -8.43 -37.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.104 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds