Wall clock time and date at job start Mon Mar 30 2020 06:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99955 * 2 1 4 4 H 1.09000 * 109.47012 * 326.69715 * 3 2 1 5 5 C 1.53000 * 109.47408 * 206.69516 * 3 2 1 6 6 N 1.46902 * 109.46682 * 64.99903 * 5 3 2 7 7 C 1.46848 * 110.99976 * 66.05279 * 6 5 3 8 8 C 1.53040 * 109.52634 * 185.83835 * 7 6 5 9 9 C 1.53117 * 109.27376 * 300.81661 * 8 7 6 10 10 C 1.53124 * 109.16138 * 57.65414 * 9 8 7 11 11 H 1.09000 * 109.50405 * 62.32436 * 10 9 8 12 12 C 1.50701 * 109.50109 * 182.40330 * 10 9 8 13 13 H 1.08005 * 120.00196 * 119.99967 * 12 10 9 14 14 C 1.37871 * 120.00503 * 299.99502 * 12 10 9 15 15 N 1.31517 * 119.99754 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00607 * 179.72523 * 14 12 10 17 17 H 1.48497 * 109.46914 * 90.00272 * 16 14 12 18 18 H 1.48500 * 109.47510 * 210.00294 * 16 14 12 19 19 H 1.48500 * 109.46776 * 330.00619 * 16 14 12 20 20 C 1.46853 * 110.99957 * 190.25345 * 6 5 3 21 21 C 1.53004 * 109.46977 * 86.69702 * 3 2 1 22 22 C 1.52997 * 109.46962 * 63.30341 * 21 3 2 23 23 C 1.52999 * 109.47082 * 183.30421 * 21 3 2 24 24 H 1.08997 * 109.47041 * 295.76172 * 1 2 3 25 25 H 1.09004 * 109.46818 * 55.76355 * 1 2 3 26 26 H 1.09003 * 109.46736 * 175.76025 * 1 2 3 27 27 H 1.08994 * 109.47047 * 305.00176 * 5 3 2 28 28 H 1.09002 * 109.47309 * 184.99867 * 5 3 2 29 29 H 1.08999 * 109.46792 * 65.81642 * 7 6 5 30 30 H 1.08999 * 109.45192 * 305.84369 * 7 6 5 31 31 H 1.08989 * 109.50431 * 180.87694 * 8 7 6 32 32 H 1.08997 * 109.50071 * 60.75196 * 8 7 6 33 33 H 1.08997 * 109.52736 * 297.74762 * 9 8 7 34 34 H 1.08999 * 109.57746 * 177.58471 * 9 8 7 35 35 H 0.96998 * 120.00237 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.45636 * 54.14675 * 20 6 5 37 37 H 1.08994 * 109.46265 * 294.18468 * 20 6 5 38 38 H 1.09004 * 109.47062 * 303.30066 * 21 3 2 39 39 H 1.09005 * 109.47022 * 60.00271 * 22 21 3 40 40 H 1.09007 * 109.46830 * 179.97438 * 22 21 3 41 41 H 1.08996 * 109.47643 * 299.99753 * 22 21 3 42 42 H 1.09009 * 109.47151 * 53.92555 * 23 21 3 43 43 H 1.08995 * 109.47312 * 173.91949 * 23 21 3 44 44 H 1.08999 * 109.47393 * 293.92708 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3733 1.9867 -0.5643 5 6 3.3950 1.2473 -0.6480 6 7 3.2577 0.8830 -2.0645 7 6 2.5651 1.9385 -2.8146 8 6 2.3112 1.4651 -4.2477 9 6 3.6488 1.1328 -4.9147 10 6 4.3717 0.0662 -4.0874 11 1 3.7753 -0.8459 -4.0687 12 6 5.7156 -0.2240 -4.7047 13 1 6.6183 -0.0616 -4.1344 14 6 5.7928 -0.6969 -5.9975 15 7 4.6936 -0.8944 -6.6922 16 14 7.4588 -1.0494 -6.7653 17 1 7.8422 -2.4576 -6.4913 18 1 7.3833 -0.8335 -8.2326 19 1 8.4753 -0.1372 -6.1824 20 6 4.5659 0.5802 -2.6592 21 6 2.1417 1.8052 1.4401 22 6 3.1010 0.8953 2.2100 23 6 2.6872 3.2346 1.4362 24 1 -0.3633 0.4466 0.9255 25 1 -0.3633 0.5782 -0.8496 26 1 -0.3633 -1.0249 -0.0760 27 1 4.0036 0.5006 -0.1381 28 1 3.8746 2.2229 -0.5686 29 1 3.1829 2.8363 -2.8328 30 1 1.6137 2.1620 -2.3322 31 1 1.8111 2.2545 -4.8085 32 1 1.6821 0.5752 -4.2308 33 1 4.2632 2.0317 -4.9667 34 1 3.4710 0.7544 -5.9213 35 1 4.7479 -1.2268 -7.6018 36 1 5.0676 -0.1826 -2.0637 37 1 5.1743 1.4843 -2.6780 38 1 1.1633 1.7911 1.9204 39 1 4.0794 0.9096 1.7297 40 1 3.1950 1.2516 3.2359 41 1 2.7124 -0.1230 2.2129 42 1 2.0624 3.8603 0.7987 43 1 2.6795 3.6293 2.4521 44 1 3.7083 3.2328 1.0548 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397644911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:14 Heat of formation + Delta-G solvation = -80.490668 kcal Electronic energy + Delta-G solvation = -20407.011979 eV Core-core repulsion = 17550.877197 eV Total energy + Delta-G solvation = -2856.134782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46923 -38.92595 -36.06703 -35.27591 -33.34507 -31.71909 -29.22945 -28.07901 -26.99280 -26.83743 -25.19671 -23.45692 -22.89044 -20.35919 -20.22060 -18.47514 -17.41597 -17.27218 -16.58171 -16.15622 -15.71802 -15.57003 -15.05541 -14.89248 -14.77304 -14.46365 -14.01966 -13.90093 -13.70855 -13.54709 -13.17397 -12.85987 -12.85072 -12.59349 -12.56162 -12.42968 -12.13098 -12.01688 -11.84616 -11.73874 -11.67878 -11.44981 -11.26585 -10.79413 -10.64877 -10.36407 -10.23530 -9.03674 -8.06921 -6.21398 1.41788 1.42061 1.52464 2.43458 2.96523 3.07940 3.19824 3.79510 3.97292 4.11746 4.20134 4.23505 4.32447 4.40523 4.48453 4.53215 4.59157 4.63911 4.65378 4.72043 4.79736 4.82918 4.88900 4.91350 4.94270 5.01332 5.05171 5.08527 5.11649 5.19010 5.23282 5.39829 5.44117 5.46808 5.53283 5.64044 5.97782 6.14371 6.22703 6.36156 6.47179 6.52168 6.91265 7.46425 8.97853 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030736 B = 0.004990 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.779857 B = 5609.697282 C = 5870.057072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.393 6.393 3 C 0.102 3.898 4 H 0.062 0.938 5 C 0.057 3.943 6 N -0.544 5.544 7 C 0.066 3.934 8 C -0.109 4.109 9 C -0.102 4.102 10 C 0.053 3.947 11 H -0.008 1.008 12 C -0.536 4.536 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.916 5.916 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.084 3.916 21 C -0.113 4.113 22 C -0.142 4.142 23 C -0.146 4.146 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.260 0.740 36 H 0.051 0.949 37 H 0.016 0.984 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.529 8.050 15.440 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.312 6.312 3 C 0.044 3.956 4 H 0.080 0.920 5 C -0.070 4.070 6 N -0.268 5.268 7 C -0.061 4.061 8 C -0.147 4.147 9 C -0.141 4.141 10 C 0.034 3.966 11 H 0.010 0.990 12 C -0.575 4.575 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.781 3.219 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.043 4.043 21 C -0.132 4.132 22 C -0.199 4.199 23 C -0.203 4.203 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.758 7.407 15.243 18.638 hybrid contribution 1.170 0.348 -0.804 1.461 sum -6.588 7.755 14.438 17.664 Atomic orbital electron populations 1.22843 0.80669 1.03016 1.00179 1.87967 1.20304 1.27966 1.94937 1.22239 0.93661 0.84627 0.95093 0.91975 1.22314 0.96841 0.99854 0.88038 1.61854 1.20772 1.42183 1.02033 1.22055 0.98318 0.91659 0.94110 1.21567 0.97692 1.00197 0.95269 1.21444 0.94552 0.97112 1.00956 1.18574 0.94333 0.93400 0.90268 0.98955 1.21523 0.93264 1.43811 0.98901 0.93097 1.25728 0.99870 0.95209 0.97666 1.70043 1.28640 1.46269 1.10611 0.85603 0.80260 0.78568 0.77489 1.20201 1.20772 1.19255 1.21940 0.88382 0.97563 0.96430 1.21577 1.00534 0.96117 0.94957 1.21769 0.98839 0.99362 0.99932 1.21861 1.01057 0.94677 1.02741 0.92889 0.94223 0.89615 0.91043 0.92782 0.95427 0.89895 0.91150 0.93487 0.95765 0.92399 0.93075 0.93081 0.96594 0.90155 0.93202 0.91558 0.93226 0.92241 0.91039 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.84 113.37 1.23 1.87 16 2 O -0.39 -11.50 9.77 -148.98 -1.46 -12.95 16 3 C 0.10 2.58 1.85 30.60 0.06 2.63 16 4 H 0.06 1.51 5.86 -2.39 -0.01 1.49 16 5 C 0.06 1.73 3.86 86.30 0.33 2.06 16 6 N -0.54 -20.65 4.60 -896.36 -4.13 -24.77 16 7 C 0.07 2.28 5.30 86.33 0.46 2.74 16 8 C -0.11 -4.35 6.09 30.65 0.19 -4.16 16 9 C -0.10 -5.07 5.02 30.67 0.15 -4.91 16 10 C 0.05 2.82 2.26 -11.49 -0.03 2.80 16 11 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 12 C -0.54 -30.71 8.56 25.60 0.22 -30.49 16 13 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 14 C 0.01 0.79 5.30 84.65 0.45 1.24 16 15 N -0.92 -54.49 11.35 21.45 0.24 -54.25 16 16 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 C 0.08 3.77 4.68 86.32 0.40 4.17 16 21 C -0.11 -2.19 2.86 -10.79 -0.03 -2.22 16 22 C -0.14 -2.86 8.64 71.98 0.62 -2.24 16 23 C -0.15 -2.40 8.76 71.98 0.63 -1.77 16 24 H 0.05 0.92 7.64 -2.39 -0.02 0.90 16 25 H 0.04 0.85 7.99 -2.39 -0.02 0.83 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 27 H 0.07 2.28 6.50 -2.39 -0.02 2.27 16 28 H 0.05 1.49 6.39 -2.39 -0.02 1.48 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 2.41 6.13 -2.39 -0.01 2.40 16 31 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 3.23 6.15 -2.39 -0.01 3.21 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.05 2.30 8.01 -2.39 -0.02 2.28 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 1.40 7.63 -2.38 -0.02 1.38 16 39 H 0.05 1.08 6.48 -2.38 -0.02 1.06 16 40 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.05 1.13 7.77 -2.39 -0.02 1.11 16 42 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.05 0.96 6.72 -2.39 -0.02 0.94 16 Total: -1.00 -64.04 331.37 2.31 -61.73 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.93 Total: 11.90 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 4.68 Total: -28.28 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -3.88 Total: -79.02 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.46 Total: -12.95 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -64.04 2.31 -61.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.759 kcal (2) G-P(sol) polarization free energy of solvation -64.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds