Wall clock time and date at job start Mon Mar 30 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00086 * 2 1 4 4 H 1.08997 * 109.47033 * 33.07731 * 3 2 1 5 5 C 1.53003 * 109.46795 * 153.07740 * 3 2 1 6 6 N 1.46904 * 109.47277 * 298.92008 * 5 3 2 7 7 C 1.46848 * 110.99796 * 169.34641 * 6 5 3 8 8 C 1.53042 * 109.51944 * 185.83926 * 7 6 5 9 9 C 1.53116 * 109.27782 * 300.82333 * 8 7 6 10 10 C 1.53122 * 109.16466 * 57.65352 * 9 8 7 11 11 H 1.08997 * 109.49903 * 62.28790 * 10 9 8 12 12 C 1.50703 * 109.50080 * 182.40294 * 10 9 8 13 13 H 1.08002 * 119.99332 * 119.81137 * 12 10 9 14 14 C 1.37875 * 120.00219 * 299.80362 * 12 10 9 15 15 N 1.31509 * 120.00065 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 119.99834 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47364 * 89.99929 * 16 14 12 18 18 H 1.48499 * 109.47357 * 209.99940 * 16 14 12 19 19 H 1.48503 * 109.47194 * 329.99730 * 16 14 12 20 20 C 1.46850 * 110.99807 * 293.55642 * 6 5 3 21 21 C 1.52997 * 109.47180 * 273.07637 * 3 2 1 22 22 C 1.52999 * 109.47134 * 175.19694 * 21 3 2 23 23 C 1.53006 * 109.47049 * 295.19782 * 21 3 2 24 24 H 1.09004 * 109.46647 * 64.91316 * 1 2 3 25 25 H 1.09000 * 109.47774 * 184.90905 * 1 2 3 26 26 H 1.08999 * 109.47188 * 304.91683 * 1 2 3 27 27 H 1.09002 * 109.47504 * 58.92361 * 5 3 2 28 28 H 1.09002 * 109.47103 * 178.91947 * 5 3 2 29 29 H 1.08998 * 109.46387 * 305.85484 * 7 6 5 30 30 H 1.09000 * 109.46168 * 65.82758 * 7 6 5 31 31 H 1.08998 * 109.50249 * 180.88323 * 8 7 6 32 32 H 1.09007 * 109.53640 * 60.78254 * 8 7 6 33 33 H 1.09005 * 109.52463 * 297.74719 * 9 8 7 34 34 H 1.09006 * 109.57352 * 177.59433 * 9 8 7 35 35 H 0.97005 * 120.00388 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.46361 * 294.17560 * 20 6 5 37 37 H 1.09004 * 109.46204 * 54.15899 * 20 6 5 38 38 H 1.09001 * 109.47043 * 55.19348 * 21 3 2 39 39 H 1.08997 * 109.46633 * 179.57849 * 22 21 3 40 40 H 1.08997 * 109.46987 * 59.57869 * 22 21 3 41 41 H 1.08994 * 109.46762 * 299.57967 * 22 21 3 42 42 H 1.08996 * 109.46896 * 179.97438 * 23 21 3 43 43 H 1.09001 * 109.46844 * 299.99688 * 23 21 3 44 44 H 1.09003 * 109.47301 * 59.99878 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3714 1.9876 0.5609 5 6 3.3926 1.2481 0.6532 6 7 3.2586 0.7952 2.0442 7 6 4.5711 0.4859 2.6256 8 6 4.3835 -0.1184 4.0191 9 6 3.6338 0.8794 4.9061 10 6 2.2914 1.2219 4.2539 11 1 1.6825 0.3209 4.1799 12 6 1.5728 2.2485 5.0910 13 1 1.3182 3.2086 4.6670 14 6 1.2403 1.9620 6.3980 15 7 1.5506 0.7930 6.9144 16 14 0.3489 3.2343 7.4353 17 1 -1.1177 3.0567 7.2844 18 1 0.7242 3.0611 8.8617 19 1 0.7316 4.5966 6.9847 20 6 2.5397 1.7874 2.8537 21 6 2.1469 1.8029 -1.4404 22 6 2.6571 3.2453 -1.4356 23 6 3.1377 0.9140 -2.1950 24 1 -0.3633 0.4357 -0.9308 25 1 -0.3635 -1.0239 0.0879 26 1 -0.3633 0.5882 0.8427 27 1 4.0256 0.5514 0.1036 28 1 3.8440 2.2402 0.6359 29 1 5.0920 -0.2278 1.9874 30 1 5.1590 1.4005 2.7026 31 1 5.3583 -0.3335 4.4568 32 1 3.8077 -1.0408 3.9419 33 1 4.2275 1.7870 5.0158 34 1 3.4599 0.4371 5.8871 35 1 1.3164 0.5913 7.8339 36 1 3.1371 2.6959 2.9296 37 1 1.5850 2.0187 2.3812 38 1 1.1751 1.7627 -1.9324 39 1 2.7616 3.5971 -2.4619 40 1 3.6254 3.2865 -0.9369 41 1 1.9476 3.8797 -0.9044 42 1 3.2347 1.2681 -3.2213 43 1 4.1095 0.9541 -1.7030 44 1 2.7743 -0.1137 -2.1984 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397644912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:17 Heat of formation + Delta-G solvation = -62.854052 kcal Electronic energy + Delta-G solvation = -20557.859140 eV Core-core repulsion = 17702.489139 eV Total energy + Delta-G solvation = -2855.370001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.13753 -37.42254 -34.91775 -33.48067 -31.63690 -29.81791 -27.93977 -27.20504 -25.73648 -24.93587 -23.95264 -21.73569 -21.24749 -19.14056 -18.54532 -16.56954 -16.21207 -15.75248 -15.06391 -14.65456 -14.30571 -14.20385 -13.85813 -13.28710 -13.22239 -12.97361 -12.87143 -12.41109 -12.34315 -12.13307 -11.72871 -11.58988 -11.45063 -11.12040 -11.00203 -10.92902 -10.73051 -10.69017 -10.61350 -10.19950 -10.03939 -9.74700 -9.39393 -9.13052 -8.95176 -8.63723 -8.26314 -7.50703 -5.93928 -4.00096 3.31993 3.38781 3.41480 4.07430 4.40200 4.53998 4.81824 5.02595 5.13519 5.35923 5.39183 5.50357 5.52872 5.63245 5.69349 5.71761 5.76203 5.81135 5.88524 5.90391 5.97436 5.99939 6.06697 6.09207 6.19361 6.30224 6.34746 6.37628 6.46671 6.57173 6.79394 6.81977 7.04323 7.29140 7.46236 7.55641 7.76696 7.80615 7.92729 8.14848 8.23043 8.52964 9.04176 9.63892 11.12029 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.005816 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.790031 B = 4813.194138 C = 5230.354737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.363 6.363 3 C 0.099 3.901 4 H 0.062 0.938 5 C 0.058 3.942 6 N -0.530 5.530 7 C 0.065 3.935 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.056 3.944 11 H 0.034 0.966 12 C -0.514 4.514 13 H 0.052 0.948 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.067 3.933 21 C -0.119 4.119 22 C -0.148 4.148 23 C -0.142 4.142 24 H 0.030 0.970 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.020 0.980 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.090 0.910 35 H 0.259 0.741 36 H 0.015 0.985 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 0.811 -14.786 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C 0.040 3.960 4 H 0.080 0.920 5 C -0.071 4.071 6 N -0.254 5.254 7 C -0.063 4.063 8 C -0.154 4.154 9 C -0.148 4.148 10 C 0.037 3.963 11 H 0.052 0.948 12 C -0.553 4.553 13 H 0.070 0.930 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.060 4.060 21 C -0.139 4.139 22 C -0.206 4.206 23 C -0.199 4.199 24 H 0.048 0.952 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.464 0.109 -14.607 14.814 hybrid contribution -0.265 1.728 0.594 1.847 sum 2.199 1.837 -14.013 14.303 Atomic orbital electron populations 1.22715 0.82063 1.02403 0.99240 1.87958 1.18624 1.26835 1.94678 1.22177 0.95163 0.85241 0.93402 0.91983 1.22227 0.95408 0.98641 0.90797 1.61921 1.18607 1.44425 1.00430 1.22000 0.89505 0.98088 0.96690 1.21664 0.99298 1.00344 0.94137 1.21644 0.96368 0.96011 1.00792 1.18644 0.93265 0.96425 0.87975 0.94773 1.21153 1.36837 1.00596 0.96700 0.93008 1.24924 0.95814 0.95245 0.97807 1.69896 1.46948 1.21197 1.14612 0.86656 0.80053 0.81969 0.79656 1.20745 1.21270 1.20069 1.22331 0.95891 0.91489 0.96249 1.21623 0.99790 0.95460 0.96982 1.21870 1.01579 0.95555 1.01572 1.21791 0.99110 1.00112 0.98901 0.95195 0.90110 0.93763 0.90622 0.94307 0.92500 0.96205 0.93655 0.92038 0.95298 0.89197 0.93097 0.96648 0.92636 0.91296 0.92684 0.92238 0.92636 0.93414 0.92482 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.84 101.05 1.10 1.54 16 2 O -0.36 -5.92 9.77 -35.23 -0.34 -6.26 16 3 C 0.10 1.47 1.78 -26.73 -0.05 1.42 16 4 H 0.06 1.00 6.02 -51.93 -0.31 0.68 16 5 C 0.06 0.91 3.90 -3.82 -0.01 0.90 16 6 N -0.53 -10.23 4.54 -234.66 -1.06 -11.29 16 7 C 0.07 1.20 5.46 -3.83 -0.02 1.18 16 8 C -0.12 -2.36 6.09 -26.65 -0.16 -2.53 16 9 C -0.11 -2.67 5.03 -26.61 -0.13 -2.80 16 10 C 0.06 1.42 2.26 -91.69 -0.21 1.22 16 11 H 0.03 0.98 8.14 -51.93 -0.42 0.55 16 12 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 15 N -0.89 -25.59 11.36 55.43 0.63 -24.96 16 16 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.07 1.47 4.52 -3.83 -0.02 1.45 16 21 C -0.12 -1.41 2.86 -90.62 -0.26 -1.67 16 22 C -0.15 -1.58 8.96 37.16 0.33 -1.25 16 23 C -0.14 -1.57 8.61 37.16 0.32 -1.25 16 24 H 0.03 0.34 7.65 -51.93 -0.40 -0.05 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.65 7.97 -51.93 -0.41 0.23 16 27 H 0.08 1.13 6.24 -51.93 -0.32 0.81 16 28 H 0.04 0.59 6.47 -51.93 -0.34 0.25 16 29 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 1.20 6.22 -51.93 -0.32 0.88 16 38 H 0.07 0.79 7.62 -51.93 -0.40 0.39 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.65 6.52 -51.93 -0.34 0.31 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.63 6.37 -51.93 -0.33 0.30 16 44 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -28.97 331.24 -8.40 -37.36 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.08 Total: -1.54 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 0.50 Total: -14.66 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.44 Total: -36.25 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.34 Total: -6.26 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.97 -8.40 -37.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.492 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds