Wall clock time and date at job start Mon Mar 30 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00086 * 2 1 4 4 H 1.08997 * 109.47033 * 33.07731 * 3 2 1 5 5 C 1.53003 * 109.46795 * 153.07740 * 3 2 1 6 6 N 1.46904 * 109.47277 * 298.92008 * 5 3 2 7 7 C 1.46848 * 110.99796 * 169.34641 * 6 5 3 8 8 C 1.53042 * 109.51944 * 185.83926 * 7 6 5 9 9 C 1.53116 * 109.27782 * 300.82333 * 8 7 6 10 10 C 1.53122 * 109.16466 * 57.65352 * 9 8 7 11 11 H 1.08997 * 109.49903 * 62.28790 * 10 9 8 12 12 C 1.50703 * 109.50080 * 182.40294 * 10 9 8 13 13 H 1.08002 * 119.99332 * 119.81137 * 12 10 9 14 14 C 1.37875 * 120.00219 * 299.80362 * 12 10 9 15 15 N 1.31509 * 120.00065 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 119.99834 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47364 * 89.99929 * 16 14 12 18 18 H 1.48499 * 109.47357 * 209.99940 * 16 14 12 19 19 H 1.48503 * 109.47194 * 329.99730 * 16 14 12 20 20 C 1.46850 * 110.99807 * 293.55642 * 6 5 3 21 21 C 1.52997 * 109.47180 * 273.07637 * 3 2 1 22 22 C 1.52999 * 109.47134 * 175.19694 * 21 3 2 23 23 C 1.53006 * 109.47049 * 295.19782 * 21 3 2 24 24 H 1.09004 * 109.46647 * 64.91316 * 1 2 3 25 25 H 1.09000 * 109.47774 * 184.90905 * 1 2 3 26 26 H 1.08999 * 109.47188 * 304.91683 * 1 2 3 27 27 H 1.09002 * 109.47504 * 58.92361 * 5 3 2 28 28 H 1.09002 * 109.47103 * 178.91947 * 5 3 2 29 29 H 1.08998 * 109.46387 * 305.85484 * 7 6 5 30 30 H 1.09000 * 109.46168 * 65.82758 * 7 6 5 31 31 H 1.08998 * 109.50249 * 180.88323 * 8 7 6 32 32 H 1.09007 * 109.53640 * 60.78254 * 8 7 6 33 33 H 1.09005 * 109.52463 * 297.74719 * 9 8 7 34 34 H 1.09006 * 109.57352 * 177.59433 * 9 8 7 35 35 H 0.97005 * 120.00388 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.46361 * 294.17560 * 20 6 5 37 37 H 1.09004 * 109.46204 * 54.15899 * 20 6 5 38 38 H 1.09001 * 109.47043 * 55.19348 * 21 3 2 39 39 H 1.08997 * 109.46633 * 179.57849 * 22 21 3 40 40 H 1.08997 * 109.46987 * 59.57869 * 22 21 3 41 41 H 1.08994 * 109.46762 * 299.57967 * 22 21 3 42 42 H 1.08996 * 109.46896 * 179.97438 * 23 21 3 43 43 H 1.09001 * 109.46844 * 299.99688 * 23 21 3 44 44 H 1.09003 * 109.47301 * 59.99878 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3714 1.9876 0.5609 5 6 3.3926 1.2481 0.6532 6 7 3.2586 0.7952 2.0442 7 6 4.5711 0.4859 2.6256 8 6 4.3835 -0.1184 4.0191 9 6 3.6338 0.8794 4.9061 10 6 2.2914 1.2219 4.2539 11 1 1.6825 0.3209 4.1799 12 6 1.5728 2.2485 5.0910 13 1 1.3182 3.2086 4.6670 14 6 1.2403 1.9620 6.3980 15 7 1.5506 0.7930 6.9144 16 14 0.3489 3.2343 7.4353 17 1 -1.1177 3.0567 7.2844 18 1 0.7242 3.0611 8.8617 19 1 0.7316 4.5966 6.9847 20 6 2.5397 1.7874 2.8537 21 6 2.1469 1.8029 -1.4404 22 6 2.6571 3.2453 -1.4356 23 6 3.1377 0.9140 -2.1950 24 1 -0.3633 0.4357 -0.9308 25 1 -0.3635 -1.0239 0.0879 26 1 -0.3633 0.5882 0.8427 27 1 4.0256 0.5514 0.1036 28 1 3.8440 2.2402 0.6359 29 1 5.0920 -0.2278 1.9874 30 1 5.1590 1.4005 2.7026 31 1 5.3583 -0.3335 4.4568 32 1 3.8077 -1.0408 3.9419 33 1 4.2275 1.7870 5.0158 34 1 3.4599 0.4371 5.8871 35 1 1.3164 0.5913 7.8339 36 1 3.1371 2.6959 2.9296 37 1 1.5850 2.0187 2.3812 38 1 1.1751 1.7627 -1.9324 39 1 2.7616 3.5971 -2.4619 40 1 3.6254 3.2865 -0.9369 41 1 1.9476 3.8797 -0.9044 42 1 3.2347 1.2681 -3.2213 43 1 4.1095 0.9541 -1.7030 44 1 2.7743 -0.1137 -2.1984 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397644912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:16 Heat of formation + Delta-G solvation = -80.322145 kcal Electronic energy + Delta-G solvation = -20558.616613 eV Core-core repulsion = 17702.489139 eV Total energy + Delta-G solvation = -2856.127474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46110 -38.91166 -36.06671 -35.28747 -33.36563 -31.69354 -29.19945 -28.06270 -26.97974 -26.91280 -25.28114 -23.22894 -23.01606 -20.36338 -20.21822 -18.48810 -17.41897 -17.26877 -16.52759 -16.23438 -15.71768 -15.62763 -15.04067 -14.81979 -14.77861 -14.40418 -14.07324 -13.91131 -13.72418 -13.55698 -13.22151 -12.86864 -12.78132 -12.67964 -12.54771 -12.41752 -12.12964 -12.04481 -11.81446 -11.74841 -11.70122 -11.42762 -11.21591 -10.83956 -10.60148 -10.38318 -10.25033 -9.02798 -8.07693 -6.22271 1.40626 1.40874 1.51234 2.42425 2.94037 3.09481 3.19078 3.80804 3.96791 4.15956 4.21108 4.27478 4.30624 4.41812 4.45940 4.52333 4.56542 4.63527 4.66031 4.73070 4.75778 4.83802 4.87915 4.90173 4.96954 5.01176 5.03881 5.10930 5.11664 5.20973 5.22754 5.40937 5.43445 5.47963 5.53516 5.63262 5.97783 6.13958 6.22217 6.35813 6.46734 6.49996 6.90651 7.45612 8.97116 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.005816 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.790031 B = 4813.194138 C = 5230.354737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.098 3.902 4 H 0.043 0.957 5 C 0.059 3.941 6 N -0.544 5.544 7 C 0.067 3.933 8 C -0.110 4.110 9 C -0.103 4.103 10 C 0.054 3.946 11 H -0.008 1.008 12 C -0.536 4.536 13 H 0.050 0.950 14 C 0.015 3.985 15 N -0.916 5.916 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.085 3.915 21 C -0.113 4.113 22 C -0.147 4.147 23 C -0.138 4.138 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.026 0.974 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.023 0.977 34 H 0.057 0.943 35 H 0.260 0.740 36 H 0.013 0.987 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 1.656 -16.448 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.039 3.961 4 H 0.061 0.939 5 C -0.069 4.069 6 N -0.269 5.269 7 C -0.060 4.060 8 C -0.148 4.148 9 C -0.142 4.142 10 C 0.036 3.964 11 H 0.010 0.990 12 C -0.575 4.575 13 H 0.068 0.932 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.779 3.221 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.042 4.042 21 C -0.132 4.132 22 C -0.204 4.204 23 C -0.196 4.196 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.176 0.957 -16.288 16.622 hybrid contribution -0.505 1.422 1.102 1.868 sum 2.671 2.379 -15.186 15.602 Atomic orbital electron populations 1.22799 0.81059 1.02954 0.99718 1.87906 1.19836 1.27745 1.94924 1.22234 0.94168 0.84470 0.95201 0.93869 1.22330 0.96460 0.99530 0.88552 1.61859 1.19260 1.43870 1.01869 1.22018 0.89291 0.99007 0.95719 1.21575 0.99650 0.98512 0.95033 1.21457 0.96185 0.96552 0.99968 1.18556 0.93135 0.94356 0.90395 0.99005 1.21508 1.37453 1.01010 0.97487 0.93176 1.25719 0.96531 0.97166 0.99007 1.70045 1.47694 1.22876 1.14883 0.85624 0.78875 0.79653 0.77907 1.20157 1.20797 1.19261 1.21953 0.96187 0.91596 0.94483 1.21565 1.00582 0.96250 0.94785 1.21862 1.01186 0.94576 1.02755 1.21761 0.98615 0.99294 0.99893 0.92788 0.89208 0.95551 0.89188 0.93125 0.89561 0.95393 0.91132 0.93474 0.95812 0.92473 0.93069 0.96922 0.93124 0.90758 0.90739 0.92401 0.93158 0.91494 0.92403 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.84 113.37 1.23 2.07 16 2 O -0.39 -12.30 9.77 -148.98 -1.46 -13.76 16 3 C 0.10 2.80 1.78 30.59 0.05 2.85 16 4 H 0.04 1.39 6.02 -2.39 -0.01 1.37 16 5 C 0.06 1.75 3.90 86.30 0.34 2.09 16 6 N -0.54 -20.59 4.54 -896.33 -4.07 -24.66 16 7 C 0.07 2.35 5.46 86.33 0.47 2.82 16 8 C -0.11 -4.40 6.09 30.65 0.19 -4.22 16 9 C -0.10 -5.13 5.03 30.67 0.15 -4.97 16 10 C 0.05 2.87 2.26 -11.49 -0.03 2.85 16 11 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 12 C -0.54 -30.45 8.56 25.60 0.22 -30.23 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 14 C 0.01 0.82 5.30 84.65 0.45 1.27 16 15 N -0.92 -54.29 11.36 21.45 0.24 -54.05 16 16 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 C 0.09 3.76 4.52 86.32 0.39 4.15 16 21 C -0.11 -2.42 2.86 -10.79 -0.03 -2.45 16 22 C -0.15 -2.75 8.96 71.98 0.64 -2.11 16 23 C -0.14 -2.67 8.61 71.98 0.62 -2.05 16 24 H 0.05 1.18 7.65 -2.39 -0.02 1.16 16 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.03 0.78 7.97 -2.39 -0.02 0.77 16 27 H 0.09 2.45 6.24 -2.39 -0.01 2.44 16 28 H 0.05 1.41 6.47 -2.39 -0.02 1.40 16 29 H 0.09 2.54 8.01 -2.39 -0.02 2.53 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.02 1.15 8.14 -2.38 -0.02 1.14 16 34 H 0.06 3.19 6.16 -2.38 -0.01 3.18 16 35 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 2.24 6.22 -2.38 -0.01 2.23 16 38 H 0.07 1.53 7.62 -2.39 -0.02 1.51 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.10 6.52 -2.39 -0.02 1.09 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.10 6.37 -2.39 -0.02 1.08 16 44 H 0.05 1.11 7.82 -2.39 -0.02 1.09 16 Total: -1.00 -63.45 331.24 2.38 -61.07 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.94 Total: 13.00 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 4.70 Total: -27.93 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -3.82 Total: -78.71 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -1.46 Total: -13.76 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -63.45 2.38 -61.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.249 kcal (2) G-P(sol) polarization free energy of solvation -63.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds