Wall clock time and date at job start Mon Mar 30 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 C 1.52996 * 109.47418 * 119.99729 * 2 1 3 5 5 C 1.53009 * 109.46952 * 65.00238 * 4 2 1 6 6 O 1.42899 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.42903 * 113.99629 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46726 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47357 * 64.99864 * 8 7 6 10 10 C 1.47841 * 110.99849 * 290.84087 * 9 8 7 11 11 C 1.54906 * 104.79638 * 213.63490 * 10 9 8 12 12 C 1.55143 * 101.65175 * 37.07361 * 11 10 9 13 13 H 1.08993 * 110.70990 * 82.72651 * 12 11 10 14 14 C 1.50700 * 110.85704 * 205.89575 * 12 11 10 15 15 H 1.07997 * 120.00198 * 113.68140 * 14 12 11 16 16 C 1.37880 * 119.99715 * 293.68697 * 14 12 11 17 17 N 1.31510 * 120.00198 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99952 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47121 * 59.99581 * 18 16 14 20 20 H 1.48502 * 109.47336 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47356 * 299.99832 * 18 16 14 22 22 C 1.47444 * 111.00005 * 169.99710 * 9 8 7 23 23 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47291 * 299.99925 * 1 2 3 25 25 H 1.08997 * 109.47139 * 60.00451 * 1 2 3 26 26 H 1.08998 * 109.47291 * 240.00075 * 2 1 3 27 27 H 1.08995 * 109.47232 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47347 * 300.00227 * 3 2 1 29 29 H 1.08998 * 109.47090 * 59.99952 * 3 2 1 30 30 H 1.08997 * 109.47562 * 305.00832 * 4 2 1 31 31 H 1.08998 * 109.47270 * 184.99748 * 4 2 1 32 32 H 1.09007 * 109.46516 * 59.99962 * 5 4 2 33 33 H 1.09004 * 109.47113 * 300.00431 * 5 4 2 34 34 H 1.09002 * 109.47382 * 59.99956 * 7 6 5 35 35 H 1.09001 * 109.46938 * 299.99942 * 7 6 5 36 36 H 1.09002 * 109.46642 * 184.99995 * 8 7 6 37 37 H 1.09002 * 109.47069 * 304.99524 * 8 7 6 38 38 H 1.08997 * 110.37474 * 332.46460 * 10 9 8 39 39 H 1.09007 * 110.37315 * 94.81033 * 10 9 8 40 40 H 1.08999 * 110.99138 * 278.98523 * 11 10 9 41 41 H 1.08999 * 110.99104 * 155.16114 * 11 10 9 42 42 H 0.96998 * 120.00434 * 180.02562 * 17 16 14 43 43 H 1.08992 * 109.88850 * 242.66640 * 22 9 8 44 44 H 1.09009 * 109.88677 * 3.69261 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1880 6 8 2.1112 -2.8689 2.3550 7 6 1.7852 -4.2597 2.3970 8 6 2.3407 -4.8750 3.6829 9 7 1.6619 -4.2816 4.8427 10 6 2.0468 -2.8644 5.0139 11 6 2.0389 -2.6346 6.5458 12 6 2.5911 -3.9870 7.0683 13 1 3.6801 -4.0006 7.0269 14 6 2.1098 -4.2572 8.4706 15 1 1.4380 -5.0809 8.6617 16 6 2.5270 -3.4526 9.5097 17 7 3.3454 -2.4498 9.2771 18 14 1.9299 -3.7870 11.2478 19 1 2.3468 -5.1512 11.6605 20 1 2.5198 -2.7880 12.1747 21 1 0.4488 -3.6881 11.2900 22 6 1.9946 -5.0112 6.0800 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -0.2618 2.1370 31 1 3.1263 -0.6443 1.2951 32 1 2.0700 -2.6549 0.3001 33 1 0.5490 -2.2724 1.1420 34 1 2.2237 -4.7618 1.5345 35 1 0.7021 -4.3798 2.3754 36 1 2.1701 -5.9516 3.6737 37 1 3.4107 -4.6773 3.7477 38 1 3.0438 -2.6905 4.6092 39 1 1.3202 -2.2126 4.5287 40 1 1.0263 -2.4598 6.9092 41 1 2.6984 -1.8114 6.8205 42 1 3.6393 -1.8840 10.0081 43 1 1.0929 -5.4535 6.5034 44 1 2.7248 -5.7916 5.8654 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397776771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:00 Heat of formation + Delta-G solvation = -69.780833 kcal Electronic energy + Delta-G solvation = -19480.651419 eV Core-core repulsion = 16624.981050 eV Total energy + Delta-G solvation = -2855.670369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.61874 -37.54125 -36.12070 -33.17951 -31.28270 -29.40054 -28.08296 -27.40975 -27.21958 -24.15140 -23.11626 -21.95368 -20.15614 -19.65620 -19.40381 -16.57498 -16.44860 -16.17088 -15.30881 -14.96707 -14.46092 -14.21519 -14.04692 -13.85236 -13.13841 -13.03253 -12.67835 -12.36988 -12.29914 -12.10388 -11.74145 -11.49689 -11.44468 -11.13483 -10.97822 -10.92828 -10.74232 -10.73153 -10.63673 -10.60260 -10.40754 -9.93990 -9.54055 -9.32261 -9.19002 -8.77402 -8.31606 -7.46363 -5.96039 -3.98455 3.35934 3.40177 3.43017 3.78407 4.48060 4.69866 4.73786 4.75462 4.85257 5.13980 5.29369 5.36610 5.37224 5.44851 5.47860 5.49626 5.54600 5.61343 5.65177 5.73619 5.81182 5.90285 5.96948 6.01373 6.06061 6.18281 6.23299 6.25614 6.37849 6.41994 6.54490 6.84264 6.95868 7.27643 7.35491 7.41577 7.69325 7.75250 7.95508 7.98775 8.09341 8.49284 9.03174 9.64866 11.14032 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.003975 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.875247 B = 7042.145091 C = 7701.048250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.115 4.115 5 C 0.061 3.939 6 O -0.377 6.377 7 C 0.070 3.930 8 C 0.052 3.948 9 N -0.533 5.533 10 C 0.055 3.945 11 C -0.108 4.108 12 C 0.035 3.965 13 H 0.029 0.971 14 C -0.510 4.510 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.046 3.954 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.260 0.740 43 H 0.067 0.933 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 2.678 -18.678 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.152 4.152 5 C -0.016 4.016 6 O -0.297 6.297 7 C -0.007 4.007 8 C -0.077 4.077 9 N -0.258 5.258 10 C -0.072 4.072 11 C -0.147 4.147 12 C 0.015 3.985 13 H 0.047 0.953 14 C -0.549 4.549 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.081 4.081 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.417 2.876 -18.540 19.070 hybrid contribution 0.464 -0.262 0.862 1.013 sum -2.953 2.615 -17.678 18.113 Atomic orbital electron populations 1.21926 0.95209 1.01905 1.01824 1.21043 0.95960 0.96319 0.97901 1.21826 1.01053 0.95725 1.01810 1.21576 1.01802 0.93492 0.98360 1.22496 0.97959 0.93060 0.88050 1.88026 1.78494 1.21694 1.41439 1.22526 0.99449 0.81718 0.96980 1.22277 0.96600 0.98041 0.90758 1.63636 1.55607 1.03556 1.02963 1.23015 0.98021 0.88267 0.97912 1.22671 1.00644 1.00577 0.90805 1.19792 0.95540 0.90000 0.93121 0.95315 1.21057 1.28352 1.13814 0.91653 0.92591 1.24980 0.94963 0.95141 0.98863 1.69956 1.33407 1.17558 1.31960 0.86679 0.79087 0.77871 0.84462 1.20355 1.21386 1.20249 1.22991 0.98902 0.96632 0.89546 0.92516 0.92353 0.92886 0.91375 0.92616 0.92777 0.92424 0.90814 0.91242 0.94222 0.93468 0.93933 0.92825 0.90305 0.94490 0.94593 0.91978 0.92847 0.91525 0.93067 0.91458 0.95088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.95 37.16 0.33 -0.93 16 2 C -0.09 -0.82 2.92 -90.62 -0.26 -1.09 16 3 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 4 C -0.11 -1.26 5.05 -26.73 -0.14 -1.40 16 5 C 0.06 0.72 5.69 37.16 0.21 0.93 16 6 O -0.38 -5.77 7.68 -35.23 -0.27 -6.04 16 7 C 0.07 0.99 6.23 37.16 0.23 1.22 16 8 C 0.05 0.86 5.13 -3.82 -0.02 0.84 16 9 N -0.53 -10.69 5.16 -231.25 -1.19 -11.88 16 10 C 0.06 1.16 5.07 -2.30 -0.01 1.15 16 11 C -0.11 -2.67 5.95 -24.59 -0.15 -2.81 16 12 C 0.03 0.90 2.77 -89.95 -0.25 0.65 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.51 -14.37 8.48 -34.44 -0.29 -14.66 16 15 H 0.06 1.55 7.53 -52.49 -0.40 1.15 16 16 C 0.06 1.76 5.36 -17.82 -0.10 1.67 16 17 N -0.89 -26.16 12.49 55.43 0.69 -25.47 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.05 1.02 6.45 -2.83 -0.02 1.01 16 23 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 37 H 0.04 0.64 7.85 -51.93 -0.41 0.23 16 38 H 0.04 0.77 7.21 -51.93 -0.37 0.39 16 39 H 0.06 1.27 7.60 -51.93 -0.39 0.87 16 40 H 0.05 1.37 8.05 -51.93 -0.42 0.95 16 41 H 0.07 1.75 7.76 -51.93 -0.40 1.34 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.07 1.52 7.63 -51.93 -0.40 1.12 16 44 H 0.03 0.64 7.55 -51.92 -0.39 0.25 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -29.50 341.80 -9.25 -38.75 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -8.49 Total: -2.88 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.11 Total: -14.27 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.50 Total: -37.35 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.27 Total: -6.04 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.50 -9.25 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397776771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.032 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds