Wall clock time and date at job start Mon Mar 30 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 C 1.52996 * 109.47418 * 119.99729 * 2 1 3 5 5 C 1.53009 * 109.46952 * 65.00238 * 4 2 1 6 6 O 1.42899 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.42903 * 113.99629 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46726 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47357 * 64.99864 * 8 7 6 10 10 C 1.47841 * 110.99849 * 290.84087 * 9 8 7 11 11 C 1.54906 * 104.79638 * 213.63490 * 10 9 8 12 12 C 1.55143 * 101.65175 * 37.07361 * 11 10 9 13 13 H 1.08993 * 110.70990 * 82.72651 * 12 11 10 14 14 C 1.50700 * 110.85704 * 205.89575 * 12 11 10 15 15 H 1.07997 * 120.00198 * 113.68140 * 14 12 11 16 16 C 1.37880 * 119.99715 * 293.68697 * 14 12 11 17 17 N 1.31510 * 120.00198 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99952 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47121 * 59.99581 * 18 16 14 20 20 H 1.48502 * 109.47336 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47356 * 299.99832 * 18 16 14 22 22 C 1.47444 * 111.00005 * 169.99710 * 9 8 7 23 23 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47291 * 299.99925 * 1 2 3 25 25 H 1.08997 * 109.47139 * 60.00451 * 1 2 3 26 26 H 1.08998 * 109.47291 * 240.00075 * 2 1 3 27 27 H 1.08995 * 109.47232 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47347 * 300.00227 * 3 2 1 29 29 H 1.08998 * 109.47090 * 59.99952 * 3 2 1 30 30 H 1.08997 * 109.47562 * 305.00832 * 4 2 1 31 31 H 1.08998 * 109.47270 * 184.99748 * 4 2 1 32 32 H 1.09007 * 109.46516 * 59.99962 * 5 4 2 33 33 H 1.09004 * 109.47113 * 300.00431 * 5 4 2 34 34 H 1.09002 * 109.47382 * 59.99956 * 7 6 5 35 35 H 1.09001 * 109.46938 * 299.99942 * 7 6 5 36 36 H 1.09002 * 109.46642 * 184.99995 * 8 7 6 37 37 H 1.09002 * 109.47069 * 304.99524 * 8 7 6 38 38 H 1.08997 * 110.37474 * 332.46460 * 10 9 8 39 39 H 1.09007 * 110.37315 * 94.81033 * 10 9 8 40 40 H 1.08999 * 110.99138 * 278.98523 * 11 10 9 41 41 H 1.08999 * 110.99104 * 155.16114 * 11 10 9 42 42 H 0.96998 * 120.00434 * 180.02562 * 17 16 14 43 43 H 1.08992 * 109.88850 * 242.66640 * 22 9 8 44 44 H 1.09009 * 109.88677 * 3.69261 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1880 6 8 2.1112 -2.8689 2.3550 7 6 1.7852 -4.2597 2.3970 8 6 2.3407 -4.8750 3.6829 9 7 1.6619 -4.2816 4.8427 10 6 2.0468 -2.8644 5.0139 11 6 2.0389 -2.6346 6.5458 12 6 2.5911 -3.9870 7.0683 13 1 3.6801 -4.0006 7.0269 14 6 2.1098 -4.2572 8.4706 15 1 1.4380 -5.0809 8.6617 16 6 2.5270 -3.4526 9.5097 17 7 3.3454 -2.4498 9.2771 18 14 1.9299 -3.7870 11.2478 19 1 2.3468 -5.1512 11.6605 20 1 2.5198 -2.7880 12.1747 21 1 0.4488 -3.6881 11.2900 22 6 1.9946 -5.0112 6.0800 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -0.2618 2.1370 31 1 3.1263 -0.6443 1.2951 32 1 2.0700 -2.6549 0.3001 33 1 0.5490 -2.2724 1.1420 34 1 2.2237 -4.7618 1.5345 35 1 0.7021 -4.3798 2.3754 36 1 2.1701 -5.9516 3.6737 37 1 3.4107 -4.6773 3.7477 38 1 3.0438 -2.6905 4.6092 39 1 1.3202 -2.2126 4.5287 40 1 1.0263 -2.4598 6.9092 41 1 2.6984 -1.8114 6.8205 42 1 3.6393 -1.8840 10.0081 43 1 1.0929 -5.4535 6.5034 44 1 2.7248 -5.7916 5.8654 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397776771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:00 Heat of formation + Delta-G solvation = -87.060460 kcal Electronic energy + Delta-G solvation = -19481.400720 eV Core-core repulsion = 16624.981050 eV Total energy + Delta-G solvation = -2856.419669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02803 -38.82583 -37.04123 -35.11377 -32.95765 -30.49596 -29.98474 -28.70521 -28.00670 -26.17025 -24.00258 -23.31676 -21.60103 -21.28305 -20.76552 -18.58375 -17.56735 -17.35442 -16.62040 -16.38326 -16.24943 -15.47794 -15.09813 -14.91260 -14.47791 -14.38636 -14.18796 -13.72198 -13.61108 -13.20020 -13.01404 -12.93779 -12.89216 -12.64009 -12.45533 -12.37757 -12.28556 -12.12846 -11.70837 -11.61369 -11.51354 -11.49589 -11.39534 -11.14479 -10.90286 -10.50030 -10.36322 -9.12664 -8.13274 -6.23577 1.41823 1.44025 1.51542 2.43451 2.80374 3.17498 3.21619 3.94582 3.98196 4.08381 4.11300 4.19478 4.32839 4.34668 4.47347 4.50278 4.54200 4.60877 4.62584 4.68015 4.74434 4.81259 4.84354 4.93204 4.97689 5.02748 5.03797 5.05925 5.13255 5.14410 5.29826 5.32040 5.41535 5.46000 5.51841 5.58084 5.72320 5.88256 6.18736 6.31925 6.36615 6.44071 6.85448 7.43787 8.96332 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.003975 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.875247 B = 7042.145091 C = 7701.048250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.113 4.113 5 C 0.060 3.940 6 O -0.407 6.407 7 C 0.074 3.926 8 C 0.048 3.952 9 N -0.533 5.533 10 C 0.077 3.923 11 C -0.102 4.102 12 C 0.026 3.974 13 H -0.004 1.004 14 C -0.531 4.531 15 H 0.058 0.942 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.057 3.943 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.027 0.973 38 H 0.031 0.969 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.261 0.739 43 H 0.064 0.936 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.967 1.865 -20.030 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.017 4.017 6 O -0.327 6.327 7 C -0.003 4.003 8 C -0.081 4.081 9 N -0.258 5.258 10 C -0.051 4.051 11 C -0.141 4.141 12 C 0.007 3.993 13 H 0.014 0.986 14 C -0.569 4.569 15 H 0.076 0.924 16 C -0.188 4.188 17 N -0.561 5.561 18 Si 0.784 3.216 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.070 4.070 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.304 2.053 -19.912 20.475 hybrid contribution 0.771 0.000 1.241 1.461 sum -3.533 2.053 -18.671 19.113 Atomic orbital electron populations 1.21922 0.94820 1.02022 1.02044 1.21024 0.96229 0.96424 0.97062 1.21833 1.01065 0.95443 1.02107 1.21581 1.01219 0.93487 0.98814 1.22644 0.98406 0.93039 0.87565 1.87980 1.79034 1.22434 1.43274 1.22516 0.99737 0.81520 0.96530 1.22466 0.95828 0.99502 0.90258 1.63635 1.56182 1.02678 1.03257 1.22754 0.98041 0.89405 0.94855 1.22483 0.98805 0.99171 0.93627 1.19770 0.93701 0.92040 0.93804 0.98594 1.21425 1.28508 1.13963 0.93009 0.92429 1.25821 0.95037 0.94849 1.03123 1.70095 1.34442 1.18397 1.33152 0.85603 0.78737 0.78012 0.79261 1.19401 1.21027 1.19512 1.22781 0.98692 0.95961 0.89578 0.92446 0.93277 0.91545 0.90195 0.92651 0.91419 0.93197 0.92682 0.92040 0.92411 0.92854 0.90863 0.92426 0.87984 0.95481 0.95078 0.91064 0.94317 0.94107 0.93065 0.91790 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.95 71.98 0.64 -1.63 16 2 C -0.09 -1.42 2.92 -10.79 -0.03 -1.45 16 3 C -0.15 -2.21 9.19 71.98 0.66 -1.55 16 4 C -0.11 -2.40 5.05 30.60 0.15 -2.25 16 5 C 0.06 1.30 5.69 71.99 0.41 1.71 16 6 O -0.41 -11.79 7.68 -148.98 -1.14 -12.94 16 7 C 0.07 1.88 6.23 71.98 0.45 2.32 16 8 C 0.05 1.47 5.13 86.30 0.44 1.91 16 9 N -0.53 -20.80 5.16 -885.53 -4.57 -25.37 16 10 C 0.08 3.25 5.07 86.77 0.44 3.69 16 11 C -0.10 -5.18 5.95 31.98 0.19 -4.99 16 12 C 0.03 1.39 2.77 -10.36 -0.03 1.36 16 13 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 14 C -0.53 -30.30 8.48 25.60 0.22 -30.09 16 15 H 0.06 3.19 7.53 -2.91 -0.02 3.17 16 16 C 0.01 0.60 5.36 84.66 0.45 1.05 16 17 N -0.92 -55.44 12.49 21.45 0.27 -55.17 16 18 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 C 0.06 2.51 6.45 86.65 0.56 3.07 16 23 H 0.06 0.85 6.57 -2.39 -0.02 0.84 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.05 1.09 6.57 -2.38 -0.02 1.08 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.10 2.67 8.03 -2.39 -0.02 2.65 16 37 H 0.03 0.90 7.85 -2.39 -0.02 0.88 16 38 H 0.03 1.34 7.21 -2.39 -0.02 1.32 16 39 H 0.07 2.89 7.60 -2.38 -0.02 2.87 16 40 H 0.04 2.03 8.05 -2.39 -0.02 2.01 16 41 H 0.04 2.23 7.76 -2.39 -0.02 2.21 16 42 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.06 2.84 7.63 -2.39 -0.02 2.82 16 44 H 0.04 1.82 7.55 -2.38 -0.02 1.81 16 Total: -1.00 -63.68 341.80 2.06 -61.62 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.92 Total: 12.04 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.56 Total: -26.84 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -4.30 Total: -80.54 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.14 Total: -12.94 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.68 2.06 -61.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397776771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.437 kcal (2) G-P(sol) polarization free energy of solvation -63.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds