Wall clock time and date at job start Mon Mar 30 2020 06:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 O 1.42898 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.42902 * 114.00186 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47230 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47008 * 64.99881 * 8 7 6 10 10 C 1.48532 * 111.00245 * 52.60602 * 9 8 7 11 11 C 1.54931 * 103.23101 * 159.71998 * 10 9 8 12 12 C 1.54606 * 102.92229 * 322.58590 * 11 10 9 13 13 H 1.08997 * 110.30315 * 263.04551 * 12 11 10 14 14 C 1.50693 * 110.39241 * 140.91625 * 12 11 10 15 15 H 1.08004 * 119.99779 * 244.23444 * 14 12 11 16 16 C 1.37877 * 120.00234 * 64.23842 * 14 12 11 17 17 N 1.31516 * 119.99758 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00125 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47185 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47283 * 119.99812 * 18 16 14 21 21 H 1.48505 * 109.46813 * 239.99531 * 18 16 14 22 22 C 1.47904 * 110.99832 * 169.99912 * 9 8 7 23 23 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 24 24 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 25 25 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 27 27 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 29 29 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 30 30 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 31 31 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 34 34 H 1.09001 * 109.46918 * 299.99649 * 7 6 5 35 35 H 1.08999 * 109.46857 * 59.99535 * 7 6 5 36 36 H 1.08999 * 109.47305 * 185.00032 * 8 7 6 37 37 H 1.09004 * 109.47201 * 305.00192 * 8 7 6 38 38 H 1.09004 * 110.66233 * 278.15349 * 10 9 8 39 39 H 1.09000 * 110.66613 * 41.28125 * 10 9 8 40 40 H 1.09000 * 110.72799 * 204.22591 * 11 10 9 41 41 H 1.09001 * 110.87912 * 81.01200 * 11 10 9 42 42 H 0.97004 * 119.99627 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.91997 * 333.50995 * 22 9 8 44 44 H 1.09008 * 109.91903 * 94.60738 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 8 2.1112 -2.8690 2.3549 7 6 1.7853 -4.2597 2.3969 8 6 2.3418 -4.8753 3.6823 9 7 1.6641 -4.2821 4.8427 10 6 0.1883 -4.3761 4.7028 11 6 -0.3168 -4.2161 6.1586 12 6 0.7471 -4.9803 6.9798 13 1 0.4056 -5.9936 7.1911 14 6 1.0431 -4.2503 8.2644 15 1 2.0279 -3.8429 8.4394 16 6 0.0568 -4.1025 9.2164 17 7 -1.1426 -4.5982 9.0031 18 14 0.4235 -3.1969 10.8085 19 1 1.8362 -2.7389 10.8034 20 1 -0.4775 -2.0227 10.9290 21 1 0.2037 -4.1097 11.9591 22 6 1.9989 -5.0142 6.0834 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 3.1300 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1263 -0.6442 1.2950 32 1 2.0699 -2.6550 0.3001 33 1 0.5490 -2.2724 1.1420 34 1 0.7021 -4.3798 2.3755 35 1 2.2237 -4.7618 1.5345 36 1 2.1713 -5.9518 3.6730 37 1 3.4119 -4.6775 3.7462 38 1 -0.1904 -3.5708 4.0734 39 1 -0.0988 -5.3477 4.3005 40 1 -1.2988 -4.6737 6.2788 41 1 -0.3447 -3.1652 6.4468 42 1 -1.8366 -4.4938 9.6727 43 1 2.2585 -6.0461 5.8472 44 1 2.8337 -4.5276 6.5880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397776774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:03 Heat of formation + Delta-G solvation = -66.929528 kcal Electronic energy + Delta-G solvation = -19349.386853 eV Core-core repulsion = 16493.840126 eV Total energy + Delta-G solvation = -2855.546727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.62926 -37.61500 -36.12973 -33.26624 -31.27354 -29.42482 -28.16803 -27.40756 -27.21028 -24.09490 -23.08109 -22.31498 -20.15013 -19.67637 -19.30360 -16.61457 -16.34520 -16.22135 -15.26535 -15.07246 -14.42611 -14.33821 -14.03712 -13.85918 -13.53001 -12.87427 -12.76829 -12.47632 -12.30284 -12.09799 -11.72908 -11.54580 -11.40581 -11.21563 -10.92919 -10.88775 -10.77510 -10.65201 -10.62417 -10.47851 -10.41815 -10.11461 -9.61239 -9.37419 -9.19808 -8.71087 -8.34197 -7.57695 -5.95445 -3.96528 3.34855 3.42635 3.47759 3.76499 4.50210 4.69289 4.72311 4.74088 4.84328 5.13511 5.23198 5.35986 5.38217 5.40603 5.44873 5.48483 5.50654 5.54318 5.64135 5.73155 5.79111 5.88223 5.91386 5.98679 6.01299 6.04622 6.17924 6.20988 6.26474 6.32969 6.35954 6.65658 6.94922 7.20138 7.28206 7.40970 7.54524 7.71980 7.90563 7.97733 8.10123 8.51599 9.05153 9.66529 11.14810 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023197 B = 0.004013 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.782630 B = 6975.293600 C = 7563.691789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.114 4.114 5 C 0.060 3.940 6 O -0.368 6.368 7 C 0.067 3.933 8 C 0.047 3.953 9 N -0.505 5.505 10 C 0.030 3.970 11 C -0.091 4.091 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.504 4.504 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.043 3.957 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.258 0.742 43 H 0.018 0.982 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 4.975 -18.358 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.017 4.017 6 O -0.287 6.287 7 C -0.010 4.010 8 C -0.082 4.082 9 N -0.229 5.229 10 C -0.098 4.098 11 C -0.130 4.130 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.084 4.084 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.944 5.592 -18.101 19.351 hybrid contribution -0.326 -0.598 0.551 0.876 sum 3.618 4.994 -17.550 18.602 Atomic orbital electron populations 1.21930 0.95183 1.01949 1.01858 1.21047 0.95997 0.96301 0.97901 1.21826 1.00994 0.95746 1.01820 1.21557 1.01743 0.93443 0.98376 1.22513 0.97967 0.93175 0.88071 1.88034 1.78103 1.21197 1.41370 1.22582 0.99089 0.82310 0.97063 1.22291 1.00088 0.95330 0.90443 1.64791 1.05887 1.50981 1.01291 1.23331 0.88523 0.97787 1.00122 1.22386 0.98975 1.01476 0.90115 1.19491 0.89219 0.96259 0.92940 0.95321 1.21234 0.97266 1.35019 1.00732 0.92408 1.24986 0.95170 0.95717 0.98297 1.69985 1.02498 1.45832 1.34831 0.86557 0.78437 0.79542 0.83601 1.19740 1.21109 1.21210 1.23125 1.01300 0.93606 0.90350 0.92319 0.92863 0.92509 0.91377 0.92645 0.92774 0.92425 0.90754 0.91255 0.94247 0.93546 0.93259 0.93901 0.94039 0.90509 0.91928 0.95687 0.92466 0.92008 0.93241 0.96394 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.95 37.16 0.33 -0.97 16 2 C -0.09 -0.83 2.92 -90.62 -0.26 -1.09 16 3 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 4 C -0.11 -1.25 5.05 -26.74 -0.14 -1.39 16 5 C 0.06 0.72 5.69 37.16 0.21 0.93 16 6 O -0.37 -5.80 10.29 -35.23 -0.36 -6.16 16 7 C 0.07 0.95 5.76 37.16 0.21 1.17 16 8 C 0.05 0.77 5.41 -3.83 -0.02 0.75 16 9 N -0.50 -10.27 5.34 -230.45 -1.23 -11.50 16 10 C 0.03 0.60 5.09 -1.90 -0.01 0.59 16 11 C -0.09 -2.20 5.75 -24.87 -0.14 -2.34 16 12 C 0.04 1.02 2.87 -90.41 -0.26 0.76 16 13 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.50 -14.20 8.38 -34.44 -0.29 -14.48 16 15 H 0.06 1.62 7.35 -52.48 -0.39 1.24 16 16 C 0.06 1.68 5.34 -17.82 -0.10 1.58 16 17 N -0.89 -26.05 12.63 55.43 0.70 -25.35 16 18 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.04 0.96 6.34 -2.75 -0.02 0.94 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 34 H 0.05 0.70 6.52 -51.93 -0.34 0.37 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.20 7.56 -51.93 -0.39 0.81 16 39 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 40 H 0.06 1.43 8.12 -51.93 -0.42 1.01 16 41 H 0.06 1.62 7.86 -51.93 -0.41 1.21 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 44 H 0.07 1.62 7.40 -51.92 -0.38 1.23 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -29.75 343.20 -9.31 -39.06 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -8.44 Total: -3.61 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.13 Total: -14.37 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: -0.53 Total: -36.85 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.36 Total: -6.16 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.75 -9.31 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397776774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.865 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds