Wall clock time and date at job start Mon Mar 30 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 O 1.42898 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.42902 * 114.00186 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47230 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47008 * 64.99881 * 8 7 6 10 10 C 1.48532 * 111.00245 * 52.60602 * 9 8 7 11 11 C 1.54931 * 103.23101 * 159.71998 * 10 9 8 12 12 C 1.54606 * 102.92229 * 322.58590 * 11 10 9 13 13 H 1.08997 * 110.30315 * 263.04551 * 12 11 10 14 14 C 1.50693 * 110.39241 * 140.91625 * 12 11 10 15 15 H 1.08004 * 119.99779 * 244.23444 * 14 12 11 16 16 C 1.37877 * 120.00234 * 64.23842 * 14 12 11 17 17 N 1.31516 * 119.99758 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00125 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47185 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47283 * 119.99812 * 18 16 14 21 21 H 1.48505 * 109.46813 * 239.99531 * 18 16 14 22 22 C 1.47904 * 110.99832 * 169.99912 * 9 8 7 23 23 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 24 24 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 25 25 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 27 27 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 29 29 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 30 30 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 31 31 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 34 34 H 1.09001 * 109.46918 * 299.99649 * 7 6 5 35 35 H 1.08999 * 109.46857 * 59.99535 * 7 6 5 36 36 H 1.08999 * 109.47305 * 185.00032 * 8 7 6 37 37 H 1.09004 * 109.47201 * 305.00192 * 8 7 6 38 38 H 1.09004 * 110.66233 * 278.15349 * 10 9 8 39 39 H 1.09000 * 110.66613 * 41.28125 * 10 9 8 40 40 H 1.09000 * 110.72799 * 204.22591 * 11 10 9 41 41 H 1.09001 * 110.87912 * 81.01200 * 11 10 9 42 42 H 0.97004 * 119.99627 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.91997 * 333.50995 * 22 9 8 44 44 H 1.09008 * 109.91903 * 94.60738 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 8 2.1112 -2.8690 2.3549 7 6 1.7853 -4.2597 2.3969 8 6 2.3418 -4.8753 3.6823 9 7 1.6641 -4.2821 4.8427 10 6 0.1883 -4.3761 4.7028 11 6 -0.3168 -4.2161 6.1586 12 6 0.7471 -4.9803 6.9798 13 1 0.4056 -5.9936 7.1911 14 6 1.0431 -4.2503 8.2644 15 1 2.0279 -3.8429 8.4394 16 6 0.0568 -4.1025 9.2164 17 7 -1.1426 -4.5982 9.0031 18 14 0.4235 -3.1969 10.8085 19 1 1.8362 -2.7389 10.8034 20 1 -0.4775 -2.0227 10.9290 21 1 0.2037 -4.1097 11.9591 22 6 1.9989 -5.0142 6.0834 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 3.1300 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1263 -0.6442 1.2950 32 1 2.0699 -2.6550 0.3001 33 1 0.5490 -2.2724 1.1420 34 1 0.7021 -4.3798 2.3755 35 1 2.2237 -4.7618 1.5345 36 1 2.1713 -5.9518 3.6730 37 1 3.4119 -4.6775 3.7462 38 1 -0.1904 -3.5708 4.0734 39 1 -0.0988 -5.3477 4.3005 40 1 -1.2988 -4.6737 6.2788 41 1 -0.3447 -3.1652 6.4468 42 1 -1.8366 -4.4938 9.6727 43 1 2.2585 -6.0461 5.8472 44 1 2.8337 -4.5276 6.5880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397776774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:02 Heat of formation + Delta-G solvation = -84.949795 kcal Electronic energy + Delta-G solvation = -19350.168270 eV Core-core repulsion = 16493.840126 eV Total energy + Delta-G solvation = -2856.328144 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.04115 -38.86011 -37.04470 -35.17196 -32.96761 -30.51160 -29.99333 -28.69596 -28.00825 -26.09681 -23.95139 -23.74410 -21.36497 -21.26952 -20.75558 -18.58264 -17.60002 -17.32372 -16.63560 -16.32436 -16.21054 -15.74955 -15.10145 -14.93207 -14.63337 -14.40177 -14.18446 -13.70259 -13.62889 -13.16473 -13.03554 -12.94856 -12.77319 -12.66161 -12.46203 -12.39805 -12.25678 -11.94397 -11.80472 -11.63473 -11.56416 -11.47894 -11.46395 -11.15045 -10.82595 -10.51523 -10.38457 -9.15298 -8.12806 -6.20964 1.40232 1.42001 1.54106 2.44240 2.76944 3.16834 3.24529 3.91667 3.94734 4.03810 4.10846 4.15747 4.31263 4.35052 4.39378 4.43487 4.52003 4.52679 4.55484 4.61748 4.69610 4.80815 4.83706 4.89804 4.94369 4.98131 5.03371 5.05479 5.12552 5.14508 5.24719 5.32555 5.36971 5.45747 5.52061 5.56149 5.73087 5.85055 6.19374 6.27718 6.38894 6.49454 6.87189 7.45501 8.97060 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023197 B = 0.004013 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.782630 B = 6975.293600 C = 7563.691789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.112 4.112 5 C 0.057 3.943 6 O -0.399 6.399 7 C 0.068 3.932 8 C 0.045 3.955 9 N -0.520 5.520 10 C 0.047 3.953 11 C -0.084 4.084 12 C 0.031 3.969 13 H 0.002 0.998 14 C -0.525 4.525 15 H 0.052 0.948 16 C 0.010 3.990 17 N -0.920 5.920 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.278 1.278 22 C 0.055 3.945 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.032 0.968 42 H 0.260 0.740 43 H 0.036 0.964 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 5.170 -19.983 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.149 4.149 5 C -0.019 4.019 6 O -0.319 6.319 7 C -0.008 4.008 8 C -0.083 4.083 9 N -0.245 5.245 10 C -0.080 4.080 11 C -0.123 4.123 12 C 0.012 3.988 13 H 0.021 0.979 14 C -0.563 4.563 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.560 5.560 18 Si 0.781 3.219 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.204 1.204 22 C -0.073 4.073 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.607 5.785 -19.743 21.082 hybrid contribution -0.522 -0.668 1.029 1.333 sum 4.085 5.117 -18.714 19.826 Atomic orbital electron populations 1.21935 0.95065 1.01929 1.02023 1.21030 0.96044 0.96569 0.97114 1.21829 1.01182 0.95287 1.02085 1.21561 1.01424 0.93233 0.98714 1.22676 0.98249 0.93346 0.87670 1.87994 1.78636 1.22012 1.43234 1.22596 0.99219 0.82094 0.96927 1.22412 0.99933 0.96317 0.89678 1.64723 1.05998 1.51723 1.02061 1.23147 0.88481 0.99219 0.97176 1.22155 0.97991 0.99054 0.93090 1.19476 0.91427 0.94544 0.93319 0.97950 1.21552 0.97134 1.35430 1.02211 0.93026 1.25760 0.94992 0.96482 1.01568 1.70094 1.03238 1.46745 1.35913 0.85544 0.78371 0.78362 0.79627 1.19234 1.20702 1.20421 1.22865 0.98941 0.94785 0.90720 0.93372 0.91500 0.92626 0.90099 0.92396 0.91477 0.93210 0.92836 0.91602 0.92246 0.93279 0.93207 0.90744 0.92384 0.90204 0.90736 0.93814 0.94129 0.94887 0.93093 0.94599 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.95 71.98 0.64 -1.74 16 2 C -0.09 -1.41 2.92 -10.80 -0.03 -1.44 16 3 C -0.15 -2.12 9.19 71.98 0.66 -1.45 16 4 C -0.11 -2.35 5.05 30.59 0.15 -2.20 16 5 C 0.06 1.26 5.69 71.98 0.41 1.67 16 6 O -0.40 -11.83 10.29 -148.98 -1.53 -13.37 16 7 C 0.07 1.76 5.76 71.98 0.41 2.18 16 8 C 0.04 1.35 5.41 86.30 0.47 1.82 16 9 N -0.52 -20.54 5.34 -883.02 -4.72 -25.26 16 10 C 0.05 1.86 5.09 86.65 0.44 2.30 16 11 C -0.08 -4.16 5.75 31.80 0.18 -3.98 16 12 C 0.03 1.64 2.87 -10.66 -0.03 1.61 16 13 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 14 C -0.53 -30.19 8.38 25.60 0.21 -29.98 16 15 H 0.05 2.95 7.35 -2.91 -0.02 2.93 16 16 C 0.01 0.60 5.34 84.65 0.45 1.05 16 17 N -0.92 -54.74 12.63 21.45 0.27 -54.47 16 18 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 C 0.05 2.39 6.34 86.45 0.55 2.94 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.87 6.56 -2.39 -0.02 0.86 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.06 6.56 -2.39 -0.02 1.04 16 34 H 0.05 1.28 6.52 -2.39 -0.02 1.26 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.59 7.81 -2.39 -0.02 1.57 16 37 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.07 2.75 7.56 -2.38 -0.02 2.74 16 39 H 0.04 1.56 8.01 -2.39 -0.02 1.54 16 40 H 0.04 2.08 8.12 -2.39 -0.02 2.06 16 41 H 0.03 1.77 7.86 -2.39 -0.02 1.75 16 42 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.04 1.42 7.57 -2.39 -0.02 1.41 16 44 H 0.06 2.70 7.40 -2.38 -0.02 2.68 16 Total: -1.00 -64.20 343.20 1.49 -62.71 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.92 Total: 10.47 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.53 Total: -27.22 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -4.45 Total: -79.73 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.53 Total: -13.37 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.20 1.49 -62.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397776774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.240 kcal (2) G-P(sol) polarization free energy of solvation -64.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds