Wall clock time and date at job start Mon Mar 30 2020 06:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00084 * 2 1 4 4 C 1.53001 * 109.46967 * 60.00885 * 3 2 1 5 5 C 1.53003 * 109.47488 * 300.00807 * 3 2 1 6 6 C 1.53001 * 109.47201 * 180.02562 * 3 2 1 7 7 N 1.46897 * 109.47257 * 67.00492 * 6 3 2 8 8 C 1.46848 * 110.99992 * 292.43156 * 7 6 3 9 9 C 1.53037 * 109.51613 * 174.15588 * 8 7 6 10 10 C 1.53121 * 109.27886 * 59.18319 * 9 8 7 11 11 C 1.53002 * 109.52037 * 182.38097 * 10 9 8 12 12 C 1.50703 * 109.46756 * 185.00240 * 11 10 9 13 13 H 1.07995 * 119.99855 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99910 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00039 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00143 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46894 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47700 * 119.99432 * 16 14 12 19 19 H 1.48498 * 109.46894 * 239.99785 * 16 14 12 20 20 C 1.53121 * 109.15799 * 302.34441 * 10 9 8 21 21 C 1.46848 * 110.99504 * 168.22645 * 7 6 3 22 22 H 1.09006 * 109.46378 * 299.99320 * 1 2 3 23 23 H 1.08992 * 109.47596 * 59.99296 * 1 2 3 24 24 H 1.09000 * 109.46975 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47462 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.46800 * 299.99687 * 4 3 2 27 27 H 1.08998 * 109.47255 * 59.99429 * 4 3 2 28 28 H 1.09004 * 109.46706 * 306.14888 * 5 3 2 29 29 H 1.08996 * 109.47067 * 66.15067 * 5 3 2 30 30 H 1.08998 * 109.46991 * 186.14744 * 5 3 2 31 31 H 1.08994 * 109.47384 * 307.00107 * 6 3 2 32 32 H 1.09005 * 109.47086 * 187.00305 * 6 3 2 33 33 H 1.09004 * 109.46252 * 54.14478 * 8 7 6 34 34 H 1.09000 * 109.46058 * 294.16840 * 8 7 6 35 35 H 1.08995 * 109.50041 * 179.12524 * 9 8 7 36 36 H 1.09005 * 109.49940 * 299.24274 * 9 8 7 37 37 H 1.08991 * 109.52271 * 62.25298 * 10 9 8 38 38 H 1.08998 * 109.47103 * 304.99697 * 11 10 9 39 39 H 1.08999 * 109.47402 * 64.99778 * 11 10 9 40 40 H 0.96996 * 120.00431 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.49914 * 177.59330 * 20 10 9 42 42 H 1.09000 * 109.50602 * 297.71129 * 20 10 9 43 43 H 1.09004 * 109.46741 * 65.83022 * 21 7 6 44 44 H 1.09005 * 109.45353 * 305.85922 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5589 2.0646 1.2494 5 6 1.5587 2.0649 -1.2491 6 6 3.5355 1.1846 -0.0006 7 7 3.9804 0.6068 -1.2758 8 6 3.5508 -0.7921 -1.3981 9 6 3.9029 -1.3150 -2.7926 10 6 5.4151 -1.2054 -3.0066 11 6 5.7664 -1.6714 -4.4210 12 6 7.2639 -1.6798 -4.5896 13 1 7.9013 -1.3821 -3.7701 14 6 7.8203 -2.0665 -5.7904 15 7 7.0441 -2.4285 -6.7885 16 14 9.6765 -2.0777 -5.9993 17 1 10.3193 -1.6314 -4.7371 18 1 10.1297 -3.4534 -6.3264 19 1 10.0562 -1.1564 -7.1003 20 6 5.8438 0.2535 -2.8259 21 6 5.4354 0.7309 -1.4305 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0277 -0.0005 25 1 2.0019 3.0605 1.2492 26 1 0.4723 2.1507 1.2494 27 1 1.8806 1.5236 2.1393 28 1 1.7831 1.4718 -2.1358 29 1 0.4853 2.2466 -1.1956 30 1 2.0859 3.0171 -1.3058 31 1 3.8492 0.5393 0.8198 32 1 3.9783 2.1728 0.1247 33 1 2.4730 -0.8554 -1.2480 34 1 4.0584 -1.3950 -0.6452 35 1 3.5980 -2.3579 -2.8778 36 1 3.3848 -0.7210 -3.5455 37 1 5.9323 -1.8300 -2.2783 38 1 5.3773 -2.6772 -4.5793 39 1 5.3226 -0.9915 -5.1483 40 1 7.4355 -2.7009 -7.6332 41 1 6.9256 0.3310 -2.9349 42 1 5.3563 0.8721 -3.5794 43 1 5.9341 0.1207 -0.6774 44 1 5.7264 1.7737 -1.3037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399704870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:09 Heat of formation + Delta-G solvation = -62.036761 kcal Electronic energy + Delta-G solvation = -20233.635047 eV Core-core repulsion = 17378.300486 eV Total energy + Delta-G solvation = -2855.334560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.65802 -37.86711 -34.58103 -32.89508 -31.71235 -30.20582 -28.20591 -27.43605 -26.99923 -25.13326 -23.11397 -22.36889 -20.55531 -19.86630 -18.77287 -16.54392 -16.19720 -15.92459 -15.55763 -14.84437 -14.43535 -14.41774 -13.70035 -13.49631 -13.17771 -13.11552 -12.88998 -12.56372 -12.17290 -12.08971 -11.96418 -11.72329 -11.44350 -11.38544 -11.24365 -11.02205 -10.80022 -10.59387 -10.50015 -10.47173 -10.11476 -9.87273 -9.49092 -9.39991 -8.93532 -8.68207 -8.27036 -7.92215 -5.91807 -3.92821 3.35069 3.42546 3.46432 3.68453 4.17477 4.52287 4.69554 4.92687 4.98046 5.20457 5.29799 5.36712 5.43515 5.47048 5.48189 5.55344 5.56926 5.65529 5.72376 5.76286 5.86216 5.92755 5.95779 5.97246 6.10639 6.18347 6.31596 6.41346 6.58778 6.63863 6.72493 6.81709 7.10230 7.18095 7.22441 7.31556 7.50134 7.57334 7.78494 7.96160 8.10167 8.53689 9.14243 9.70316 11.19621 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.044507 B = 0.004264 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.957606 B = 6565.534287 C = 6870.694088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.370 6.370 3 C 0.114 3.886 4 C -0.176 4.176 5 C -0.163 4.163 6 C 0.069 3.931 7 N -0.530 5.530 8 C 0.047 3.953 9 C -0.111 4.111 10 C -0.082 4.082 11 C 0.028 3.972 12 C -0.512 4.512 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.098 4.098 21 C 0.055 3.945 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.258 0.742 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.227 8.700 15.006 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.290 6.290 3 C 0.075 3.925 4 C -0.234 4.234 5 C -0.220 4.220 6 C -0.059 4.059 7 N -0.255 5.255 8 C -0.080 4.080 9 C -0.149 4.149 10 C -0.100 4.100 11 C -0.009 4.009 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.135 4.135 21 C -0.073 4.073 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.314 8.739 14.447 20.898 hybrid contribution 1.260 -0.283 0.462 1.372 sum -11.054 8.456 14.909 20.396 Atomic orbital electron populations 1.22761 0.82307 1.02380 0.99937 1.88033 1.18987 1.27408 1.94542 1.21554 0.93368 0.83300 0.94298 1.22388 1.01755 1.00938 0.98356 1.22217 0.99701 1.01024 0.99057 1.22060 0.92258 0.99948 0.91648 1.61967 1.13217 1.19168 1.31122 1.22521 1.02065 0.86506 0.96877 1.21688 0.97809 0.99696 0.95673 1.21235 0.93070 0.95158 1.00586 1.19122 0.96005 0.96120 0.89690 1.21316 0.92284 1.43710 0.97696 0.92702 1.25020 0.97674 0.95661 0.96187 1.69980 1.34507 1.45830 1.03343 0.86608 0.86276 0.77534 0.78010 1.19820 1.21153 1.21123 1.21518 1.01066 0.96971 0.93983 1.22198 0.86740 0.99679 0.98661 0.94245 0.93753 0.90036 0.91481 0.92118 0.92007 0.90127 0.93530 0.91873 0.94595 0.90011 0.88143 0.96161 0.92521 0.91998 0.93259 0.96845 0.96577 0.93220 0.91126 0.91983 0.95690 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.21 101.05 1.03 1.24 16 2 O -0.37 -4.52 7.05 -35.23 -0.25 -4.76 16 3 C 0.11 1.26 0.82 -90.62 -0.07 1.19 16 4 C -0.18 -1.53 8.25 37.16 0.31 -1.22 16 5 C -0.16 -1.78 7.70 37.16 0.29 -1.49 16 6 C 0.07 0.86 4.33 -3.83 -0.02 0.85 16 7 N -0.53 -8.03 3.71 -234.67 -0.87 -8.90 16 8 C 0.05 0.77 5.09 -3.83 -0.02 0.75 16 9 C -0.11 -2.07 5.38 -26.65 -0.14 -2.21 16 10 C -0.08 -1.75 2.20 -90.49 -0.20 -1.95 16 11 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 12 C -0.51 -14.59 8.45 -34.44 -0.29 -14.88 16 13 H 0.05 1.53 7.08 -52.49 -0.37 1.15 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 C -0.10 -1.90 5.15 -26.65 -0.14 -2.04 16 21 C 0.05 0.88 5.46 -3.83 -0.02 0.86 16 22 H 0.04 0.31 6.42 -51.93 -0.33 -0.02 16 23 H 0.04 0.39 6.56 -51.93 -0.34 0.05 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.07 7.65 -51.93 -0.40 0.67 16 29 H 0.05 0.44 6.88 -51.93 -0.36 0.08 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.47 8.11 -51.93 -0.42 0.05 16 32 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 33 H 0.10 1.58 4.88 -51.93 -0.25 1.33 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.07 1.45 7.06 -51.93 -0.37 1.09 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.89 8.00 -51.93 -0.42 0.48 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -30.44 330.97 -8.13 -38.57 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -8.22 Total: -3.36 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 0.50 Total: -16.81 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.13 Total: -35.60 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.25 Total: -4.76 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.44 -8.13 -38.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399704870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.464 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds