Wall clock time and date at job start Mon Mar 30 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00084 * 2 1 4 4 C 1.53001 * 109.46967 * 60.00885 * 3 2 1 5 5 C 1.53003 * 109.47488 * 300.00807 * 3 2 1 6 6 C 1.53001 * 109.47201 * 180.02562 * 3 2 1 7 7 N 1.46897 * 109.47257 * 67.00492 * 6 3 2 8 8 C 1.46848 * 110.99992 * 292.43156 * 7 6 3 9 9 C 1.53037 * 109.51613 * 174.15588 * 8 7 6 10 10 C 1.53121 * 109.27886 * 59.18319 * 9 8 7 11 11 C 1.53002 * 109.52037 * 182.38097 * 10 9 8 12 12 C 1.50703 * 109.46756 * 185.00240 * 11 10 9 13 13 H 1.07995 * 119.99855 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99910 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00039 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00143 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46894 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47700 * 119.99432 * 16 14 12 19 19 H 1.48498 * 109.46894 * 239.99785 * 16 14 12 20 20 C 1.53121 * 109.15799 * 302.34441 * 10 9 8 21 21 C 1.46848 * 110.99504 * 168.22645 * 7 6 3 22 22 H 1.09006 * 109.46378 * 299.99320 * 1 2 3 23 23 H 1.08992 * 109.47596 * 59.99296 * 1 2 3 24 24 H 1.09000 * 109.46975 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47462 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.46800 * 299.99687 * 4 3 2 27 27 H 1.08998 * 109.47255 * 59.99429 * 4 3 2 28 28 H 1.09004 * 109.46706 * 306.14888 * 5 3 2 29 29 H 1.08996 * 109.47067 * 66.15067 * 5 3 2 30 30 H 1.08998 * 109.46991 * 186.14744 * 5 3 2 31 31 H 1.08994 * 109.47384 * 307.00107 * 6 3 2 32 32 H 1.09005 * 109.47086 * 187.00305 * 6 3 2 33 33 H 1.09004 * 109.46252 * 54.14478 * 8 7 6 34 34 H 1.09000 * 109.46058 * 294.16840 * 8 7 6 35 35 H 1.08995 * 109.50041 * 179.12524 * 9 8 7 36 36 H 1.09005 * 109.49940 * 299.24274 * 9 8 7 37 37 H 1.08991 * 109.52271 * 62.25298 * 10 9 8 38 38 H 1.08998 * 109.47103 * 304.99697 * 11 10 9 39 39 H 1.08999 * 109.47402 * 64.99778 * 11 10 9 40 40 H 0.96996 * 120.00431 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.49914 * 177.59330 * 20 10 9 42 42 H 1.09000 * 109.50602 * 297.71129 * 20 10 9 43 43 H 1.09004 * 109.46741 * 65.83022 * 21 7 6 44 44 H 1.09005 * 109.45353 * 305.85922 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5589 2.0646 1.2494 5 6 1.5587 2.0649 -1.2491 6 6 3.5355 1.1846 -0.0006 7 7 3.9804 0.6068 -1.2758 8 6 3.5508 -0.7921 -1.3981 9 6 3.9029 -1.3150 -2.7926 10 6 5.4151 -1.2054 -3.0066 11 6 5.7664 -1.6714 -4.4210 12 6 7.2639 -1.6798 -4.5896 13 1 7.9013 -1.3821 -3.7701 14 6 7.8203 -2.0665 -5.7904 15 7 7.0441 -2.4285 -6.7885 16 14 9.6765 -2.0777 -5.9993 17 1 10.3193 -1.6314 -4.7371 18 1 10.1297 -3.4534 -6.3264 19 1 10.0562 -1.1564 -7.1003 20 6 5.8438 0.2535 -2.8259 21 6 5.4354 0.7309 -1.4305 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0277 -0.0005 25 1 2.0019 3.0605 1.2492 26 1 0.4723 2.1507 1.2494 27 1 1.8806 1.5236 2.1393 28 1 1.7831 1.4718 -2.1358 29 1 0.4853 2.2466 -1.1956 30 1 2.0859 3.0171 -1.3058 31 1 3.8492 0.5393 0.8198 32 1 3.9783 2.1728 0.1247 33 1 2.4730 -0.8554 -1.2480 34 1 4.0584 -1.3950 -0.6452 35 1 3.5980 -2.3579 -2.8778 36 1 3.3848 -0.7210 -3.5455 37 1 5.9323 -1.8300 -2.2783 38 1 5.3773 -2.6772 -4.5793 39 1 5.3226 -0.9915 -5.1483 40 1 7.4355 -2.7009 -7.6332 41 1 6.9256 0.3310 -2.9349 42 1 5.3563 0.8721 -3.5794 43 1 5.9341 0.1207 -0.6774 44 1 5.7264 1.7737 -1.3037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399704870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:08 Heat of formation + Delta-G solvation = -80.025630 kcal Electronic energy + Delta-G solvation = -20234.415102 eV Core-core repulsion = 17378.300486 eV Total energy + Delta-G solvation = -2856.114616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70102 -39.11966 -36.12265 -34.52816 -33.15727 -31.65540 -29.86405 -28.22168 -27.91590 -26.61747 -24.72965 -23.84314 -22.19758 -20.73289 -20.40030 -18.42100 -17.45277 -16.97506 -16.53331 -16.47949 -15.80884 -15.65707 -15.04590 -14.83282 -14.63985 -14.41110 -14.06266 -13.88720 -13.44594 -13.36325 -13.07653 -12.92961 -12.76168 -12.72573 -12.56605 -12.52271 -12.18934 -12.13346 -12.11048 -11.93195 -11.64453 -11.37161 -11.19672 -10.86432 -10.71247 -10.51981 -10.15889 -9.14154 -8.16597 -6.26485 1.39707 1.39862 1.53162 2.42329 2.88331 3.03479 3.16367 3.84050 4.04875 4.08275 4.14849 4.18623 4.22480 4.43890 4.52441 4.57916 4.61266 4.65627 4.73602 4.76640 4.77531 4.79369 4.85470 4.90286 4.98550 5.00444 5.08972 5.13876 5.19034 5.27247 5.29425 5.39272 5.47076 5.51814 5.56183 5.61160 5.82234 5.90161 6.24250 6.27807 6.33048 6.43688 6.89599 7.41859 8.95677 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.044507 B = 0.004264 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.957606 B = 6565.534287 C = 6870.694088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.395 6.395 3 C 0.112 3.888 4 C -0.170 4.170 5 C -0.158 4.158 6 C 0.068 3.932 7 N -0.535 5.535 8 C 0.060 3.940 9 C -0.105 4.105 10 C -0.075 4.075 11 C 0.034 3.966 12 C -0.529 4.529 13 H 0.060 0.940 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.962 3.038 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.278 1.278 20 C -0.092 4.092 21 C 0.064 3.936 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.014 0.986 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.042 0.958 38 H -0.017 1.017 39 H -0.012 1.012 40 H 0.262 0.738 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.026 0.974 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 10.113 16.907 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.315 6.315 3 C 0.073 3.927 4 C -0.228 4.228 5 C -0.216 4.216 6 C -0.060 4.060 7 N -0.260 5.260 8 C -0.067 4.067 9 C -0.143 4.143 10 C -0.094 4.094 11 C -0.003 4.003 12 C -0.567 4.567 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.577 5.577 16 Si 0.787 3.213 17 H -0.185 1.185 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.130 4.130 21 C -0.064 4.064 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.001 0.999 39 H 0.006 0.994 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.198 10.161 16.370 22.803 hybrid contribution 1.154 -0.740 -0.161 1.381 sum -11.043 9.421 16.208 21.758 Atomic orbital electron populations 1.22896 0.80869 1.03140 1.00790 1.87952 1.20605 1.28250 1.94702 1.21606 0.92364 0.83262 0.95459 1.22325 1.02521 1.01136 0.96795 1.22164 1.00805 1.00732 0.97872 1.22204 0.93552 1.00516 0.89736 1.61939 1.12488 1.18250 1.33304 1.22364 1.02650 0.87204 0.94475 1.21596 0.95582 0.99660 0.97434 1.21092 0.95006 0.96374 0.96901 1.19006 0.95192 0.93797 0.92266 1.21675 0.93274 1.43633 0.98072 0.92196 1.25974 1.03159 0.95065 0.95783 1.70119 1.36950 1.46660 1.03981 0.85438 0.79661 0.77762 0.78434 1.18530 1.20550 1.20403 1.21389 1.00010 0.95245 0.96310 1.22072 0.87468 1.00988 0.95881 0.92601 0.93596 0.89485 0.90155 0.91057 0.92013 0.92885 0.92083 0.91252 0.94884 0.88045 0.87117 0.96726 0.92856 0.92901 0.93946 0.99880 0.99372 0.92944 0.92528 0.93163 0.95603 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.21 113.37 1.16 1.47 16 2 O -0.39 -8.89 7.05 -148.98 -1.05 -9.94 16 3 C 0.11 2.20 0.82 -10.79 -0.01 2.19 16 4 C -0.17 -2.38 8.25 71.98 0.59 -1.79 16 5 C -0.16 -3.15 7.70 71.98 0.55 -2.59 16 6 C 0.07 1.52 4.33 86.30 0.37 1.89 16 7 N -0.54 -15.45 3.71 -896.35 -3.32 -18.78 16 8 C 0.06 1.93 5.09 86.33 0.44 2.37 16 9 C -0.10 -4.01 5.38 30.65 0.16 -3.84 16 10 C -0.08 -3.30 2.20 -10.71 -0.02 -3.33 16 11 C 0.03 1.91 4.45 29.85 0.13 2.04 16 12 C -0.53 -30.84 8.45 25.60 0.22 -30.62 16 13 H 0.06 3.36 7.08 -2.91 -0.02 3.34 16 14 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 15 N -0.94 -58.68 13.29 21.45 0.28 -58.40 16 16 Si 0.96 45.37 29.54 68.60 2.03 47.39 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 C -0.09 -3.59 5.15 30.65 0.16 -3.43 16 21 C 0.06 1.94 5.46 86.32 0.47 2.41 16 22 H 0.06 0.72 6.42 -2.38 -0.02 0.71 16 23 H 0.05 0.73 6.56 -2.39 -0.02 0.71 16 24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.86 6.54 -2.39 -0.02 0.84 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 1.36 7.65 -2.38 -0.02 1.34 16 29 H 0.06 1.01 6.88 -2.39 -0.02 1.00 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.03 0.78 8.11 -2.39 -0.02 0.76 16 32 H 0.10 1.88 7.95 -2.38 -0.02 1.86 16 33 H 0.11 3.39 4.88 -2.39 -0.01 3.38 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 38 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 39 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.06 2.34 7.06 -2.39 -0.02 2.33 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.03 0.79 8.14 -2.38 -0.02 0.78 16 44 H 0.09 2.27 8.00 -2.38 -0.02 2.26 16 Total: -1.00 -66.60 330.97 3.56 -63.04 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.93 Total: 9.62 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 4.69 Total: -32.94 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -3.04 Total: -77.17 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -66.60 3.56 -63.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399704870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.987 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds