Wall clock time and date at job start Mon Mar 30 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00120 * 2 1 4 4 C 1.52994 * 109.47396 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47115 * 64.99976 * 4 3 2 6 6 C 1.36939 * 119.99989 * 274.29496 * 5 4 3 7 7 H 1.07999 * 119.99998 * 146.04114 * 6 5 4 8 8 C 1.38809 * 120.00186 * 326.04032 * 6 5 4 9 9 N 1.31624 * 119.99721 * 335.35715 * 8 6 5 10 10 Si 1.86797 * 120.00260 * 155.35023 * 8 6 5 11 11 H 1.48508 * 109.46768 * 60.00250 * 10 8 6 12 12 H 1.48499 * 109.47459 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47236 * 300.00680 * 10 8 6 14 14 C 1.46504 * 120.00159 * 94.29021 * 5 4 3 15 15 C 1.52999 * 109.47133 * 270.00382 * 14 5 4 16 16 C 1.53005 * 109.46963 * 179.97438 * 15 14 5 17 17 C 1.52998 * 109.47095 * 59.99884 * 16 15 14 18 18 C 1.52998 * 109.47069 * 300.00291 * 16 15 14 19 19 C 1.52992 * 109.47212 * 180.02562 * 16 15 14 20 20 C 1.52999 * 117.52106 * 111.28270 * 19 16 15 21 21 C 1.52999 * 117.50064 * 179.91481 * 19 16 15 22 22 H 1.08992 * 109.46958 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46964 * 299.99818 * 1 2 3 24 24 H 1.09005 * 109.47259 * 59.99874 * 1 2 3 25 25 H 1.09001 * 109.47136 * 59.99839 * 3 2 1 26 26 H 1.09005 * 109.46879 * 300.00112 * 3 2 1 27 27 H 1.09002 * 109.47501 * 305.00417 * 4 3 2 28 28 H 1.08993 * 109.47426 * 184.99897 * 4 3 2 29 29 H 0.97004 * 119.99423 * 179.97438 * 9 8 6 30 30 H 1.08999 * 109.46851 * 150.00176 * 14 5 4 31 31 H 1.09002 * 109.46553 * 30.00573 * 14 5 4 32 32 H 1.08992 * 109.47254 * 59.99791 * 15 14 5 33 33 H 1.09000 * 109.46895 * 299.99229 * 15 14 5 34 34 H 1.08994 * 109.47427 * 180.02562 * 17 16 15 35 35 H 1.09006 * 109.46992 * 299.99906 * 17 16 15 36 36 H 1.08997 * 109.47385 * 59.99643 * 17 16 15 37 37 H 1.09005 * 109.47020 * 299.99963 * 18 16 15 38 38 H 1.08999 * 109.47334 * 59.99472 * 18 16 15 39 39 H 1.08995 * 109.47186 * 180.02562 * 18 16 15 40 40 H 1.09002 * 115.54864 * 325.58007 * 19 16 15 41 41 H 1.09003 * 117.49731 * 214.97305 * 20 19 16 42 42 H 1.09000 * 117.49625 * 359.97438 * 20 19 16 43 43 H 1.09003 * 117.49500 * 359.97438 * 21 19 16 44 44 H 1.09006 * 117.50165 * 144.99685 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0125 -0.7998 -1.3651 7 1 3.7915 -1.2698 -2.3120 8 6 4.3341 -1.5786 -0.2620 9 7 5.0527 -1.0694 0.7162 10 14 3.7468 -3.3493 -0.1656 11 1 4.2912 -4.1146 -1.3161 12 1 4.2193 -3.9592 1.1032 13 1 2.2628 -3.3816 -0.2074 14 6 4.3764 1.4038 -2.3847 15 6 3.1554 1.6986 -3.2583 16 6 3.5738 2.5757 -4.4402 17 6 4.6299 1.8432 -5.2702 18 6 4.1571 3.8903 -3.9183 19 6 2.3528 2.8711 -5.3135 20 6 1.8317 4.3094 -5.3368 21 6 2.5652 3.7417 -6.5536 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8515 0.5682 0.8409 28 1 3.9785 2.1765 0.0889 29 1 5.2770 -1.6136 1.4872 30 1 5.1286 0.8815 -2.9759 31 1 4.7921 2.3404 -2.0132 32 1 2.4032 2.2208 -2.6672 33 1 2.7397 0.7620 -3.6298 34 1 4.9283 2.4681 -6.1118 35 1 5.4997 1.6331 -4.6477 36 1 4.2145 0.9065 -5.6419 37 1 3.4047 4.4122 -3.3270 38 1 5.0268 3.6802 -3.2959 39 1 4.4547 4.5153 -4.7602 40 1 1.6184 2.0685 -5.3817 41 1 0.7544 4.4531 -5.4204 42 1 2.3585 5.0455 -4.7295 43 1 3.5747 4.1043 -6.7470 44 1 1.9704 3.5119 -7.4377 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000406079055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:50 Heat of formation + Delta-G solvation = -9.578312 kcal Electronic energy + Delta-G solvation = -20494.771844 eV Core-core repulsion = 17641.712053 eV Total energy + Delta-G solvation = -2853.059791 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.03051 -37.11161 -35.48735 -33.63337 -31.10203 -29.10719 -27.23897 -27.13280 -25.56487 -24.67867 -23.12869 -22.14052 -21.13849 -19.90177 -17.88520 -16.67192 -16.03475 -15.52105 -14.95407 -14.67759 -14.47497 -14.03555 -13.84340 -13.67590 -13.06888 -13.00584 -12.44128 -12.30460 -11.93005 -11.71786 -11.49450 -11.37057 -11.09713 -10.79935 -10.78453 -10.74425 -10.61537 -10.53224 -10.37418 -10.08050 -9.88903 -9.86539 -9.71125 -9.57545 -9.44261 -8.65886 -8.24207 -6.43107 -5.58221 -3.10276 3.52426 3.57394 3.65010 3.93892 4.65535 4.79337 4.80669 5.05112 5.06515 5.24343 5.42589 5.49685 5.52230 5.66424 5.69322 5.83237 5.83848 5.89062 5.90144 5.95282 6.02542 6.14475 6.15505 6.18612 6.22916 6.26479 6.35083 6.37768 6.42275 6.51537 6.59440 6.68023 6.73689 6.78822 6.82390 7.07785 7.24289 7.78613 7.99997 8.19626 8.69931 9.36795 10.03737 10.56493 11.42169 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.006287 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.944732 B = 4452.690988 C = 4892.780593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.350 6.350 3 C 0.048 3.952 4 C 0.138 3.862 5 N -0.578 5.578 6 C -0.236 4.236 7 H 0.055 0.945 8 C 0.018 3.982 9 N -0.893 5.893 10 Si 0.894 3.106 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.282 1.282 14 C 0.146 3.854 15 C -0.121 4.121 16 C -0.033 4.033 17 C -0.137 4.137 18 C -0.143 4.143 19 C -0.133 4.133 20 C -0.188 4.188 21 C -0.184 4.184 22 H 0.072 0.928 23 H 0.024 0.976 24 H 0.027 0.973 25 H 0.020 0.980 26 H 0.029 0.971 27 H 0.104 0.896 28 H 0.037 0.963 29 H 0.251 0.749 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 9.653 -8.386 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C -0.032 4.032 4 C 0.011 3.989 5 N -0.297 5.297 6 C -0.366 4.366 7 H 0.073 0.927 8 C -0.181 4.181 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.208 1.208 14 C 0.019 3.981 15 C -0.161 4.161 16 C -0.034 4.034 17 C -0.194 4.194 18 C -0.200 4.200 19 C -0.151 4.151 20 C -0.224 4.224 21 C -0.221 4.221 22 H 0.091 0.909 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.122 0.878 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.183 9.396 -8.228 13.522 hybrid contribution -0.918 -0.635 0.066 1.118 sum -6.101 8.761 -8.162 13.439 Atomic orbital electron populations 1.22619 0.84623 1.01311 0.98231 1.88256 1.16201 1.27584 1.94752 1.23479 0.98961 0.84125 0.96599 1.21081 0.87725 0.96369 0.93746 1.43692 1.74265 1.02354 1.09412 1.18765 1.39902 0.81166 0.96752 0.92737 1.24859 0.97249 0.97385 0.98566 1.69973 1.36605 1.36642 1.10490 0.86515 0.79403 0.85237 0.76415 1.21361 1.22102 1.20849 1.21021 0.93491 0.93782 0.89772 1.22260 1.00633 0.98052 0.95157 1.20094 0.92906 0.95578 0.94834 1.21853 0.98738 0.99780 0.99061 1.22019 1.01029 0.96624 1.00322 1.22421 1.00066 0.93564 0.99097 1.23094 0.99730 0.97658 1.01967 1.22895 1.01456 1.05466 0.92259 0.90904 0.95702 0.95418 0.96217 0.95300 0.87825 0.94426 0.93900 0.93268 0.94970 0.93088 0.92414 0.93643 0.91932 0.92828 0.92746 0.91991 0.93544 0.88306 0.89646 0.88314 0.89034 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -8.11 9.97 -35.23 -0.35 -8.46 16 3 C 0.05 1.00 6.28 37.15 0.23 1.24 16 4 C 0.14 3.27 5.82 -4.04 -0.02 3.25 16 5 N -0.58 -14.34 2.45 -173.24 -0.42 -14.77 16 6 C -0.24 -6.57 8.75 -15.06 -0.13 -6.70 16 7 H 0.05 1.54 7.94 -52.49 -0.42 1.12 16 8 C 0.02 0.52 4.95 -17.43 -0.09 0.44 16 9 N -0.89 -26.32 11.37 55.49 0.63 -25.68 16 10 Si 0.89 22.82 29.62 -169.99 -5.03 17.78 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 13 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 14 C 0.15 3.00 5.00 -4.04 -0.02 2.98 16 15 C -0.12 -2.15 4.57 -26.73 -0.12 -2.27 16 16 C -0.03 -0.48 0.65 -154.51 -0.10 -0.58 16 17 C -0.14 -1.92 7.96 37.16 0.30 -1.62 16 18 C -0.14 -1.87 6.72 37.16 0.25 -1.62 16 19 C -0.13 -1.73 5.15 -90.62 -0.47 -2.20 16 20 C -0.19 -2.14 9.57 -26.73 -0.26 -2.40 16 21 C -0.18 -2.04 9.38 -26.73 -0.25 -2.29 16 22 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.58 6.45 -51.93 -0.33 0.25 16 27 H 0.10 2.84 5.37 -51.93 -0.28 2.57 16 28 H 0.04 0.82 7.84 -51.93 -0.41 0.41 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.05 1.05 6.33 -51.93 -0.33 0.72 16 31 H 0.03 0.63 6.15 -51.93 -0.32 0.31 16 32 H 0.05 0.94 6.45 -51.93 -0.34 0.60 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.04 0.56 7.29 -51.93 -0.38 0.18 16 35 H 0.06 0.92 6.43 -51.93 -0.33 0.59 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.70 6.97 -51.93 -0.36 0.34 16 38 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 39 H 0.05 0.54 7.07 -51.93 -0.37 0.17 16 40 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.10 5.85 -51.93 -0.30 0.80 16 43 H 0.09 0.98 7.07 -51.93 -0.37 0.62 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -29.77 335.77 -7.49 -37.26 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.81 Total: -1.07 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 0.43 Total: -10.13 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.21 Total: -40.45 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.35 Total: -8.46 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.03 Total: 17.78 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.77 -7.49 -37.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406079055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.684 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds