Wall clock time and date at job start Mon Mar 30 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00120 * 2 1 4 4 C 1.52994 * 109.47396 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47115 * 64.99976 * 4 3 2 6 6 C 1.36939 * 119.99989 * 274.29496 * 5 4 3 7 7 H 1.07999 * 119.99998 * 146.04114 * 6 5 4 8 8 C 1.38809 * 120.00186 * 326.04032 * 6 5 4 9 9 N 1.31624 * 119.99721 * 335.35715 * 8 6 5 10 10 Si 1.86797 * 120.00260 * 155.35023 * 8 6 5 11 11 H 1.48508 * 109.46768 * 60.00250 * 10 8 6 12 12 H 1.48499 * 109.47459 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47236 * 300.00680 * 10 8 6 14 14 C 1.46504 * 120.00159 * 94.29021 * 5 4 3 15 15 C 1.52999 * 109.47133 * 270.00382 * 14 5 4 16 16 C 1.53005 * 109.46963 * 179.97438 * 15 14 5 17 17 C 1.52998 * 109.47095 * 59.99884 * 16 15 14 18 18 C 1.52998 * 109.47069 * 300.00291 * 16 15 14 19 19 C 1.52992 * 109.47212 * 180.02562 * 16 15 14 20 20 C 1.52999 * 117.52106 * 111.28270 * 19 16 15 21 21 C 1.52999 * 117.50064 * 179.91481 * 19 16 15 22 22 H 1.08992 * 109.46958 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46964 * 299.99818 * 1 2 3 24 24 H 1.09005 * 109.47259 * 59.99874 * 1 2 3 25 25 H 1.09001 * 109.47136 * 59.99839 * 3 2 1 26 26 H 1.09005 * 109.46879 * 300.00112 * 3 2 1 27 27 H 1.09002 * 109.47501 * 305.00417 * 4 3 2 28 28 H 1.08993 * 109.47426 * 184.99897 * 4 3 2 29 29 H 0.97004 * 119.99423 * 179.97438 * 9 8 6 30 30 H 1.08999 * 109.46851 * 150.00176 * 14 5 4 31 31 H 1.09002 * 109.46553 * 30.00573 * 14 5 4 32 32 H 1.08992 * 109.47254 * 59.99791 * 15 14 5 33 33 H 1.09000 * 109.46895 * 299.99229 * 15 14 5 34 34 H 1.08994 * 109.47427 * 180.02562 * 17 16 15 35 35 H 1.09006 * 109.46992 * 299.99906 * 17 16 15 36 36 H 1.08997 * 109.47385 * 59.99643 * 17 16 15 37 37 H 1.09005 * 109.47020 * 299.99963 * 18 16 15 38 38 H 1.08999 * 109.47334 * 59.99472 * 18 16 15 39 39 H 1.08995 * 109.47186 * 180.02562 * 18 16 15 40 40 H 1.09002 * 115.54864 * 325.58007 * 19 16 15 41 41 H 1.09003 * 117.49731 * 214.97305 * 20 19 16 42 42 H 1.09000 * 117.49625 * 359.97438 * 20 19 16 43 43 H 1.09003 * 117.49500 * 359.97438 * 21 19 16 44 44 H 1.09006 * 117.50165 * 144.99685 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0125 -0.7998 -1.3651 7 1 3.7915 -1.2698 -2.3120 8 6 4.3341 -1.5786 -0.2620 9 7 5.0527 -1.0694 0.7162 10 14 3.7468 -3.3493 -0.1656 11 1 4.2912 -4.1146 -1.3161 12 1 4.2193 -3.9592 1.1032 13 1 2.2628 -3.3816 -0.2074 14 6 4.3764 1.4038 -2.3847 15 6 3.1554 1.6986 -3.2583 16 6 3.5738 2.5757 -4.4402 17 6 4.6299 1.8432 -5.2702 18 6 4.1571 3.8903 -3.9183 19 6 2.3528 2.8711 -5.3135 20 6 1.8317 4.3094 -5.3368 21 6 2.5652 3.7417 -6.5536 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8515 0.5682 0.8409 28 1 3.9785 2.1765 0.0889 29 1 5.2770 -1.6136 1.4872 30 1 5.1286 0.8815 -2.9759 31 1 4.7921 2.3404 -2.0132 32 1 2.4032 2.2208 -2.6672 33 1 2.7397 0.7620 -3.6298 34 1 4.9283 2.4681 -6.1118 35 1 5.4997 1.6331 -4.6477 36 1 4.2145 0.9065 -5.6419 37 1 3.4047 4.4122 -3.3270 38 1 5.0268 3.6802 -3.2959 39 1 4.4547 4.5153 -4.7602 40 1 1.6184 2.0685 -5.3817 41 1 0.7544 4.4531 -5.4204 42 1 2.3585 5.0455 -4.7295 43 1 3.5747 4.1043 -6.7470 44 1 1.9704 3.5119 -7.4377 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000406079055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:50 Heat of formation + Delta-G solvation = -25.479067 kcal Electronic energy + Delta-G solvation = -20495.461353 eV Core-core repulsion = 17641.712053 eV Total energy + Delta-G solvation = -2853.749300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16825 -38.77444 -37.15254 -35.02783 -33.07300 -30.74475 -28.89272 -28.21964 -27.13755 -26.25473 -24.72968 -23.00879 -22.68893 -21.61729 -19.02569 -18.63654 -17.50200 -16.89052 -16.63892 -16.38258 -15.72021 -15.69837 -15.46357 -15.13500 -14.61422 -14.41401 -13.80949 -13.62353 -13.40687 -13.29406 -12.97013 -12.68392 -12.56784 -12.49325 -12.34736 -12.27166 -12.20307 -11.93527 -11.75708 -11.71430 -11.51624 -11.31902 -11.20468 -10.98566 -10.63191 -10.34213 -10.24585 -8.47484 -7.69292 -5.25061 1.45853 1.51158 1.58372 2.60585 3.01433 3.23046 3.38808 3.68471 3.84298 4.03101 4.12515 4.21635 4.32909 4.39302 4.42085 4.52398 4.58656 4.63974 4.70746 4.76309 4.80273 4.81968 4.84995 4.90544 4.93759 4.96049 5.03329 5.04932 5.14634 5.23164 5.24550 5.30644 5.36099 5.45419 5.54045 5.65997 5.68231 5.75264 5.87132 6.50335 6.69733 7.29632 8.01814 8.49241 9.25561 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.006287 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.944732 B = 4452.690988 C = 4892.780593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.057 3.943 4 C 0.135 3.865 5 N -0.593 5.593 6 C -0.234 4.234 7 H 0.042 0.958 8 C -0.025 4.025 9 N -0.919 5.919 10 Si 0.942 3.058 11 H -0.280 1.280 12 H -0.295 1.295 13 H -0.286 1.286 14 C 0.147 3.853 15 C -0.103 4.103 16 C -0.027 4.027 17 C -0.135 4.135 18 C -0.139 4.139 19 C -0.154 4.154 20 C -0.181 4.181 21 C -0.169 4.169 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.247 0.753 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 11.234 -9.602 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.022 4.022 4 C 0.008 3.992 5 N -0.313 5.313 6 C -0.365 4.365 7 H 0.060 0.940 8 C -0.222 4.222 9 N -0.565 5.565 10 Si 0.772 3.228 11 H -0.206 1.206 12 H -0.222 1.222 13 H -0.213 1.213 14 C 0.022 3.978 15 C -0.142 4.142 16 C -0.028 4.028 17 C -0.192 4.192 18 C -0.196 4.196 19 C -0.172 4.172 20 C -0.218 4.218 21 C -0.206 4.206 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.215 10.993 -9.466 15.782 hybrid contribution -0.629 -1.082 0.405 1.316 sum -6.845 9.910 -9.062 15.072 Atomic orbital electron populations 1.22795 0.81981 1.02321 0.99970 1.88173 1.19244 1.28751 1.95127 1.23276 0.96885 0.83910 0.98107 1.21027 0.89925 0.96176 0.92062 1.43889 1.74811 1.01909 1.10727 1.18837 1.38605 0.82870 0.96178 0.94013 1.25374 0.97933 1.00194 0.98682 1.70083 1.38032 1.37508 1.10872 0.85744 0.78496 0.82220 0.76377 1.20619 1.22176 1.21290 1.21106 0.94483 0.93385 0.88838 1.21982 0.98779 0.97549 0.95933 1.19984 0.93738 0.95472 0.93624 1.21831 0.98064 0.99784 0.99547 1.21981 1.00593 0.96051 1.00978 1.22268 0.99589 0.94437 1.00944 1.23174 1.00460 0.96165 1.01990 1.22971 1.02075 1.03550 0.92002 0.90393 0.93429 0.94040 0.93873 0.94286 0.91372 0.92861 0.94421 0.94585 0.93687 0.93486 0.95014 0.91403 0.93236 0.93891 0.92363 0.92974 0.91478 0.89510 0.88804 0.87767 0.88219 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.39 -18.01 9.97 -148.98 -1.49 -19.49 16 3 C 0.06 2.34 6.28 71.98 0.45 2.79 16 4 C 0.13 6.41 5.82 86.38 0.50 6.91 16 5 N -0.59 -29.77 2.45 -702.01 -1.72 -31.49 16 6 C -0.23 -13.27 8.75 84.03 0.74 -12.54 16 7 H 0.04 2.43 7.94 -2.91 -0.02 2.41 16 8 C -0.03 -1.47 4.95 84.86 0.42 -1.05 16 9 N -0.92 -55.33 11.37 21.65 0.25 -55.08 16 10 Si 0.94 47.59 29.62 68.60 2.03 49.62 16 11 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 13 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 14 C 0.15 6.09 5.00 86.38 0.43 6.52 16 15 C -0.10 -3.62 4.57 30.60 0.14 -3.48 16 16 C -0.03 -0.75 0.65 -52.18 -0.03 -0.78 16 17 C -0.14 -3.63 7.96 71.98 0.57 -3.06 16 18 C -0.14 -3.31 6.72 71.98 0.48 -2.83 16 19 C -0.15 -3.70 5.15 -10.80 -0.06 -3.76 16 20 C -0.18 -3.58 9.57 30.59 0.29 -3.29 16 21 C -0.17 -3.20 9.38 30.59 0.29 -2.91 16 22 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 1.51 6.45 -2.38 -0.02 1.50 16 27 H 0.07 3.82 5.37 -2.39 -0.01 3.80 16 28 H 0.05 2.29 7.84 -2.39 -0.02 2.27 16 29 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.04 1.57 6.33 -2.39 -0.02 1.55 16 31 H 0.04 1.74 6.15 -2.39 -0.01 1.72 16 32 H 0.05 1.68 6.45 -2.39 -0.02 1.67 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.50 7.29 -2.39 -0.02 1.49 16 35 H 0.05 1.44 6.43 -2.38 -0.02 1.43 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.34 6.97 -2.38 -0.02 1.33 16 38 H 0.05 1.34 6.43 -2.39 -0.02 1.32 16 39 H 0.07 1.33 7.07 -2.39 -0.02 1.31 16 40 H 0.09 2.29 8.11 -2.39 -0.02 2.27 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.10 1.96 5.85 -2.39 -0.01 1.95 16 43 H 0.10 1.75 7.07 -2.39 -0.02 1.73 16 44 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -64.32 335.77 5.50 -58.82 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.95 Total: 12.96 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 5.48 Total: -15.34 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -1.48 Total: -86.57 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -1.49 Total: -19.49 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -64.32 5.50 -58.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406079055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.345 kcal (2) G-P(sol) polarization free energy of solvation -64.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds