Wall clock time and date at job start Mon Mar 30 2020 06:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42893 * 114.00188 * 2 1 4 4 C 1.53007 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47189 * 175.00002 * 4 3 2 6 6 N 1.46900 * 109.46854 * 295.00434 * 4 3 2 7 7 C 1.46900 * 110.99786 * 230.27806 * 6 4 3 8 8 H 1.09002 * 110.43461 * 327.15492 * 7 6 4 9 9 C 1.54264 * 110.48395 * 89.68756 * 7 6 4 10 10 C 1.54091 * 106.49339 * 142.19743 * 9 7 6 11 11 C 1.54264 * 106.62108 * 0.17442 * 10 9 7 12 12 H 1.09003 * 110.48826 * 94.95585 * 11 10 9 13 13 C 1.50694 * 110.59712 * 217.54670 * 11 10 9 14 14 H 1.08004 * 120.00225 * 114.84309 * 13 11 10 15 15 C 1.37880 * 120.00181 * 294.83675 * 13 11 10 16 16 N 1.31510 * 119.99593 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99992 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47246 * 90.00409 * 17 15 13 19 19 H 1.48498 * 109.46703 * 210.00240 * 17 15 13 20 20 H 1.48497 * 109.47062 * 329.99750 * 17 15 13 21 21 C 1.54889 * 104.19545 * 336.27810 * 11 10 9 22 22 C 1.52996 * 109.46643 * 55.00145 * 4 3 2 23 23 C 1.53005 * 109.47453 * 64.09463 * 22 4 3 24 24 C 1.53002 * 109.46882 * 184.09333 * 22 4 3 25 25 H 1.09004 * 109.46768 * 60.00011 * 1 2 3 26 26 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46693 * 300.00041 * 1 2 3 28 28 H 1.09002 * 109.47304 * 60.00191 * 3 2 1 29 29 H 1.09004 * 109.47308 * 300.00041 * 3 2 1 30 30 H 1.00898 * 111.00159 * 354.23089 * 6 4 3 31 31 H 1.09003 * 110.03511 * 261.57097 * 9 7 6 32 32 H 1.09005 * 110.03423 * 23.00432 * 9 7 6 33 33 H 1.09001 * 110.11377 * 240.82973 * 10 9 7 34 34 H 1.09003 * 109.96902 * 119.44038 * 10 9 7 35 35 H 0.96998 * 119.99939 * 179.97438 * 16 15 13 36 36 H 1.08998 * 110.75993 * 279.63171 * 21 11 10 37 37 H 1.08998 * 110.75629 * 156.25578 * 21 11 10 38 38 H 1.09000 * 109.47297 * 304.09572 * 22 4 3 39 39 H 1.09000 * 109.46780 * 59.99793 * 23 22 4 40 40 H 1.08998 * 109.47084 * 179.97438 * 23 22 4 41 41 H 1.08996 * 109.46939 * 299.99976 * 23 22 4 42 42 H 1.09002 * 109.47200 * 56.65298 * 24 22 4 43 43 H 1.08997 * 109.47249 * 176.64644 * 24 22 4 44 44 H 1.08996 * 109.47256 * 296.64789 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 1 3.9787 2.1764 -0.0889 6 7 3.9769 0.5625 1.2561 7 6 5.0440 1.3505 1.8874 8 1 5.6635 1.8288 1.1287 9 6 4.4445 2.4064 2.8389 10 6 5.3848 2.4812 4.0574 11 6 6.5226 1.4720 3.7995 12 1 7.3813 1.9715 3.3510 13 6 6.9227 0.7854 5.0799 14 1 6.7633 -0.2765 5.1959 15 6 7.4923 1.5129 6.1033 16 7 7.6860 2.8060 5.9622 17 14 7.9889 0.6617 7.6902 18 1 9.3919 0.1879 7.5797 19 1 7.8771 1.6181 8.8207 20 1 7.0925 -0.4972 7.9318 21 6 5.9089 0.4533 2.8071 22 6 3.9790 0.3193 -1.1807 23 6 3.6093 1.0171 -2.4912 24 6 5.4941 0.1140 -1.1220 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.2010 0.4332 1.8879 31 1 4.3978 3.3747 2.3405 32 1 3.4474 2.1005 3.1556 33 1 4.8446 2.2111 4.9648 34 1 5.7926 3.4877 4.1517 35 1 8.0864 3.3179 6.6822 36 1 5.2885 -0.2726 3.3328 37 1 6.6900 -0.0471 2.2348 38 1 3.4790 -0.6479 -1.1305 39 1 4.1093 1.9844 -2.5413 40 1 3.9257 0.4009 -3.3327 41 1 2.5300 1.1634 -2.5330 42 1 5.7639 -0.3290 -0.1633 43 1 5.8021 -0.5509 -1.9289 44 1 5.9956 1.0755 -1.2320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453289114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:30 Heat of formation + Delta-G solvation = -72.588271 kcal Electronic energy + Delta-G solvation = -20058.897687 eV Core-core repulsion = 17203.105578 eV Total energy + Delta-G solvation = -2855.792108 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.05983 -37.38364 -35.81806 -33.10570 -31.63430 -29.10516 -27.99105 -26.82449 -26.51332 -25.36818 -23.53496 -22.58641 -19.91808 -19.28632 -18.87517 -16.56386 -16.24542 -15.91806 -15.64266 -15.11239 -14.55500 -14.10872 -14.04570 -13.89864 -13.34210 -12.55749 -12.45086 -12.33571 -12.19493 -11.98511 -11.91209 -11.51585 -11.45879 -11.22575 -10.96775 -10.75807 -10.63845 -10.46202 -10.39090 -10.33140 -10.02868 -9.78223 -9.65509 -9.47041 -9.01135 -8.66780 -8.31669 -7.81628 -5.94521 -3.96276 3.34825 3.41343 3.45129 3.70381 4.46882 4.55403 4.83364 4.92769 5.16584 5.20601 5.27432 5.35161 5.36650 5.43884 5.48778 5.52263 5.62696 5.66442 5.76756 5.80848 5.95609 6.02829 6.06845 6.12879 6.29296 6.30842 6.53104 6.63406 6.71892 6.75380 6.82457 6.93516 7.05682 7.13170 7.25044 7.41281 7.65778 7.77367 7.87863 7.98070 8.10547 8.55703 9.07535 9.67464 11.15470 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.004546 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.630400 B = 6158.359961 C = 6486.139873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.095 3.905 5 H 0.066 0.934 6 N -0.671 5.671 7 C 0.080 3.920 8 H 0.071 0.929 9 C -0.153 4.153 10 C -0.094 4.094 11 C 0.047 3.953 12 H 0.028 0.972 13 C -0.509 4.509 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.098 4.098 22 C -0.078 4.078 23 C -0.148 4.148 24 C -0.142 4.142 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.342 0.658 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.258 0.742 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 -1.694 -14.081 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.015 4.015 5 H 0.084 0.916 6 N -0.301 5.301 7 C -0.029 4.029 8 H 0.089 0.911 9 C -0.193 4.193 10 C -0.133 4.133 11 C 0.028 3.972 12 H 0.046 0.954 13 C -0.548 4.548 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.136 4.136 22 C -0.097 4.097 23 C -0.206 4.206 24 C -0.200 4.200 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.161 0.839 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.216 -2.137 -14.291 18.292 hybrid contribution -0.534 0.833 1.309 1.641 sum -11.750 -1.304 -12.982 17.558 Atomic orbital electron populations 1.22725 0.81781 1.02567 0.99577 1.87976 1.18831 1.27258 1.95234 1.23036 0.94910 0.85062 0.99956 1.21721 0.90559 0.96887 0.92364 0.91642 1.60567 1.13809 1.49994 1.05760 1.22709 0.92265 0.92902 0.95021 0.91068 1.23011 0.99169 0.98072 0.99005 1.22064 0.96267 1.00748 0.94184 1.19449 0.93007 0.91449 0.93325 0.95365 1.21187 1.39686 0.94605 0.99277 0.92653 1.24986 0.95741 0.94832 0.98476 1.69973 1.44323 1.06027 1.32772 0.86668 0.78932 0.79394 0.83448 1.20758 1.21410 1.19936 1.22518 0.97042 0.97933 0.96149 1.21000 0.96722 0.99728 0.92300 1.21907 1.00700 1.00331 0.97648 1.21772 0.94957 1.00725 1.02504 0.94541 0.89742 0.94303 0.93561 0.93056 0.83873 0.94001 0.93556 0.93217 0.93075 0.93231 0.92327 0.93409 0.90146 0.93204 0.92887 0.93189 0.90671 0.93855 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.37 -4.60 9.61 -35.23 -0.34 -4.94 16 3 C 0.05 0.55 4.91 37.16 0.18 0.73 16 4 C 0.09 1.24 2.10 -67.71 -0.14 1.09 16 5 H 0.07 0.87 7.34 -51.93 -0.38 0.49 16 6 N -0.67 -10.31 5.39 -98.01 -0.53 -10.84 16 7 C 0.08 1.42 2.33 -66.05 -0.15 1.27 16 8 H 0.07 1.26 7.36 -51.93 -0.38 0.88 16 9 C -0.15 -2.84 6.51 -25.50 -0.17 -3.01 16 10 C -0.09 -2.20 5.61 -25.50 -0.14 -2.34 16 11 C 0.05 1.17 2.72 -90.12 -0.24 0.92 16 12 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.51 -14.17 8.37 -34.44 -0.29 -14.46 16 14 H 0.06 1.53 7.77 -52.48 -0.41 1.12 16 15 C 0.06 1.71 5.35 -17.82 -0.10 1.61 16 16 N -0.89 -26.02 12.63 55.43 0.70 -25.32 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.10 -2.07 5.97 -24.74 -0.15 -2.21 16 22 C -0.08 -0.98 2.55 -90.62 -0.23 -1.21 16 23 C -0.15 -1.54 8.93 37.16 0.33 -1.21 16 24 C -0.14 -1.88 8.60 37.16 0.32 -1.56 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.05 0.52 6.79 -51.93 -0.35 0.16 16 30 H 0.34 5.34 7.36 -39.29 -0.29 5.05 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.81 7.52 -51.93 -0.39 0.42 16 33 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 34 H 0.05 1.28 8.06 -51.93 -0.42 0.86 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.12 7.42 -51.93 -0.39 0.73 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.49 6.65 -51.93 -0.35 0.14 16 42 H 0.07 1.15 7.02 -51.93 -0.36 0.79 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -28.56 340.47 -8.05 -36.61 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.33 Total: 1.75 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 0.33 Total: -18.98 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.17 Total: -36.16 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.34 Total: -4.94 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.56 -8.05 -36.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453289114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.980 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds