Wall clock time and date at job start Mon Mar 30 2020 06:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42893 * 114.00188 * 2 1 4 4 C 1.53007 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47189 * 175.00002 * 4 3 2 6 6 N 1.46900 * 109.46854 * 295.00434 * 4 3 2 7 7 C 1.46900 * 110.99786 * 230.27806 * 6 4 3 8 8 H 1.09002 * 110.43461 * 327.15492 * 7 6 4 9 9 C 1.54264 * 110.48395 * 89.68756 * 7 6 4 10 10 C 1.54091 * 106.49339 * 142.19743 * 9 7 6 11 11 C 1.54264 * 106.62108 * 0.17442 * 10 9 7 12 12 H 1.09003 * 110.48826 * 94.95585 * 11 10 9 13 13 C 1.50694 * 110.59712 * 217.54670 * 11 10 9 14 14 H 1.08004 * 120.00225 * 114.84309 * 13 11 10 15 15 C 1.37880 * 120.00181 * 294.83675 * 13 11 10 16 16 N 1.31510 * 119.99593 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99992 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47246 * 90.00409 * 17 15 13 19 19 H 1.48498 * 109.46703 * 210.00240 * 17 15 13 20 20 H 1.48497 * 109.47062 * 329.99750 * 17 15 13 21 21 C 1.54889 * 104.19545 * 336.27810 * 11 10 9 22 22 C 1.52996 * 109.46643 * 55.00145 * 4 3 2 23 23 C 1.53005 * 109.47453 * 64.09463 * 22 4 3 24 24 C 1.53002 * 109.46882 * 184.09333 * 22 4 3 25 25 H 1.09004 * 109.46768 * 60.00011 * 1 2 3 26 26 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46693 * 300.00041 * 1 2 3 28 28 H 1.09002 * 109.47304 * 60.00191 * 3 2 1 29 29 H 1.09004 * 109.47308 * 300.00041 * 3 2 1 30 30 H 1.00898 * 111.00159 * 354.23089 * 6 4 3 31 31 H 1.09003 * 110.03511 * 261.57097 * 9 7 6 32 32 H 1.09005 * 110.03423 * 23.00432 * 9 7 6 33 33 H 1.09001 * 110.11377 * 240.82973 * 10 9 7 34 34 H 1.09003 * 109.96902 * 119.44038 * 10 9 7 35 35 H 0.96998 * 119.99939 * 179.97438 * 16 15 13 36 36 H 1.08998 * 110.75993 * 279.63171 * 21 11 10 37 37 H 1.08998 * 110.75629 * 156.25578 * 21 11 10 38 38 H 1.09000 * 109.47297 * 304.09572 * 22 4 3 39 39 H 1.09000 * 109.46780 * 59.99793 * 23 22 4 40 40 H 1.08998 * 109.47084 * 179.97438 * 23 22 4 41 41 H 1.08996 * 109.46939 * 299.99976 * 23 22 4 42 42 H 1.09002 * 109.47200 * 56.65298 * 24 22 4 43 43 H 1.08997 * 109.47249 * 176.64644 * 24 22 4 44 44 H 1.08996 * 109.47256 * 296.64789 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 1 3.9787 2.1764 -0.0889 6 7 3.9769 0.5625 1.2561 7 6 5.0440 1.3505 1.8874 8 1 5.6635 1.8288 1.1287 9 6 4.4445 2.4064 2.8389 10 6 5.3848 2.4812 4.0574 11 6 6.5226 1.4720 3.7995 12 1 7.3813 1.9715 3.3510 13 6 6.9227 0.7854 5.0799 14 1 6.7633 -0.2765 5.1959 15 6 7.4923 1.5129 6.1033 16 7 7.6860 2.8060 5.9622 17 14 7.9889 0.6617 7.6902 18 1 9.3919 0.1879 7.5797 19 1 7.8771 1.6181 8.8207 20 1 7.0925 -0.4972 7.9318 21 6 5.9089 0.4533 2.8071 22 6 3.9790 0.3193 -1.1807 23 6 3.6093 1.0171 -2.4912 24 6 5.4941 0.1140 -1.1220 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.2010 0.4332 1.8879 31 1 4.3978 3.3747 2.3405 32 1 3.4474 2.1005 3.1556 33 1 4.8446 2.2111 4.9648 34 1 5.7926 3.4877 4.1517 35 1 8.0864 3.3179 6.6822 36 1 5.2885 -0.2726 3.3328 37 1 6.6900 -0.0471 2.2348 38 1 3.4790 -0.6479 -1.1305 39 1 4.1093 1.9844 -2.5413 40 1 3.9257 0.4009 -3.3327 41 1 2.5300 1.1634 -2.5330 42 1 5.7639 -0.3290 -0.1633 43 1 5.8021 -0.5509 -1.9289 44 1 5.9956 1.0755 -1.2320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453289114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:30 Heat of formation + Delta-G solvation = -89.459947 kcal Electronic energy + Delta-G solvation = -20059.629298 eV Core-core repulsion = 17203.105578 eV Total energy + Delta-G solvation = -2856.523719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20026 -38.70845 -36.97503 -34.83864 -33.23679 -30.26436 -29.77681 -28.00940 -27.53972 -26.58294 -25.31904 -23.64117 -21.28881 -20.94311 -20.33796 -18.36014 -17.38578 -16.84741 -16.79754 -16.52177 -16.25027 -15.56230 -15.42152 -14.92244 -14.29517 -14.23856 -14.00999 -13.74341 -13.33699 -13.11763 -12.97666 -12.87239 -12.80686 -12.74417 -12.44966 -12.32371 -12.25366 -11.93405 -11.56062 -11.53941 -11.42553 -11.39861 -11.27313 -10.86609 -10.74530 -10.49389 -10.46692 -9.08987 -8.10832 -6.19882 1.41027 1.41378 1.52007 2.44440 2.87930 3.19836 3.34801 3.86444 3.98665 4.05867 4.13837 4.28786 4.32932 4.44449 4.49290 4.56434 4.61313 4.64370 4.68471 4.76112 4.88544 4.90390 4.91576 5.01795 5.05662 5.08412 5.13841 5.19338 5.21578 5.29563 5.37655 5.46002 5.46839 5.65799 5.66652 5.68056 5.94678 6.01212 6.23328 6.38525 6.46284 6.63661 6.91953 7.47423 8.98422 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.004546 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.630400 B = 6158.359961 C = 6486.139873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.051 3.949 4 C 0.092 3.908 5 H 0.068 0.932 6 N -0.671 5.671 7 C 0.100 3.900 8 H 0.075 0.925 9 C -0.140 4.140 10 C -0.085 4.085 11 C 0.037 3.963 12 H -0.003 1.003 13 C -0.530 4.530 14 H 0.051 0.949 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.952 3.048 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.268 1.268 21 C -0.089 4.089 22 C -0.074 4.074 23 C -0.142 4.142 24 C -0.140 4.140 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.342 0.658 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.259 0.741 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.245 -1.948 -15.189 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.026 4.026 4 C -0.017 4.017 5 H 0.086 0.914 6 N -0.302 5.302 7 C -0.010 4.010 8 H 0.093 0.907 9 C -0.180 4.180 10 C -0.124 4.124 11 C 0.018 3.982 12 H 0.015 0.985 13 C -0.568 4.568 14 H 0.069 0.931 15 C -0.187 4.187 16 N -0.561 5.561 17 Si 0.777 3.223 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.127 4.127 22 C -0.093 4.093 23 C -0.200 4.200 24 C -0.198 4.198 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.653 -2.403 -15.415 20.087 hybrid contribution -0.085 0.886 1.630 1.857 sum -12.738 -1.517 -13.785 18.830 Atomic orbital electron populations 1.22884 0.80192 1.03489 1.00501 1.87942 1.20623 1.27673 1.95429 1.22977 0.93492 0.85130 1.00980 1.21800 0.92077 0.96825 0.91020 0.91395 1.60468 1.13447 1.49815 1.06426 1.22381 0.92532 0.91756 0.94340 0.90711 1.22898 0.98600 0.99523 0.96953 1.21845 0.96416 0.98572 0.95573 1.19440 0.92734 0.92685 0.93310 0.98495 1.21556 1.39922 0.94631 1.00683 0.93093 1.25760 0.95767 0.95463 1.01737 1.70095 1.44996 1.07298 1.33753 0.85653 0.78724 0.78470 0.79424 1.20124 1.20940 1.19262 1.22337 0.97327 0.97241 0.95829 1.20941 0.95787 0.99255 0.93318 1.21848 1.01359 1.00398 0.96397 1.21740 0.95773 1.00766 1.01498 0.93072 0.88943 0.93869 0.93393 0.91121 0.83827 0.92132 0.91929 0.95489 0.95546 0.93196 0.93071 0.93533 0.91521 0.92660 0.92193 0.92275 0.93130 0.92847 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.85 9.61 -148.98 -1.43 -10.28 16 3 C 0.05 1.04 4.91 71.98 0.35 1.39 16 4 C 0.09 2.21 2.10 44.92 0.09 2.30 16 5 H 0.07 1.62 7.34 -2.39 -0.02 1.61 16 6 N -0.67 -19.66 5.39 -463.98 -2.50 -22.15 16 7 C 0.10 3.45 2.33 45.99 0.11 3.55 16 8 H 0.07 2.56 7.36 -2.39 -0.02 2.54 16 9 C -0.14 -5.06 6.51 31.39 0.20 -4.85 16 10 C -0.09 -4.07 5.61 31.39 0.18 -3.90 16 11 C 0.04 1.92 2.72 -10.47 -0.03 1.89 16 12 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 13 C -0.53 -30.19 8.37 25.60 0.21 -29.97 16 14 H 0.05 2.87 7.77 -2.91 -0.02 2.85 16 15 C 0.01 0.63 5.35 84.66 0.45 1.09 16 16 N -0.92 -55.02 12.63 21.45 0.27 -54.75 16 17 Si 0.95 44.77 29.54 68.60 2.03 46.80 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 C -0.09 -3.79 5.97 31.89 0.19 -3.60 16 22 C -0.07 -1.69 2.55 -10.79 -0.03 -1.72 16 23 C -0.14 -2.55 8.93 71.98 0.64 -1.91 16 24 C -0.14 -3.53 8.60 71.98 0.62 -2.91 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 29 H 0.07 1.17 6.79 -2.39 -0.02 1.15 16 30 H 0.34 10.09 7.36 -89.70 -0.66 9.43 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.06 7.52 -2.38 -0.02 2.05 16 33 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 34 H 0.03 1.34 8.06 -2.39 -0.02 1.32 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.05 2.23 8.05 -2.39 -0.02 2.21 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 1.74 7.42 -2.39 -0.02 1.72 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.96 6.65 -2.39 -0.02 0.94 16 42 H 0.05 1.52 7.02 -2.39 -0.02 1.50 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -62.23 340.47 2.89 -59.34 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.28 Total: 18.03 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 4.25 Total: -36.98 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -2.23 Total: -76.91 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.43 Total: -10.28 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -62.23 2.89 -59.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453289114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.121 kcal (2) G-P(sol) polarization free energy of solvation -62.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds