Wall clock time and date at job start Mon Mar 30 2020 07:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46795 * 2 1 4 4 H 1.08997 * 110.27605 * 52.90706 * 3 2 1 5 5 C 1.54946 * 110.30882 * 175.00114 * 3 2 1 6 6 C 1.55301 * 100.94396 * 155.35822 * 5 3 2 7 7 H 1.09002 * 110.84992 * 84.25881 * 6 5 3 8 8 N 1.46903 * 110.85134 * 207.67816 * 6 5 3 9 9 C 1.46893 * 111.00119 * 204.99967 * 8 6 5 10 10 C 1.53000 * 109.47186 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46927 * 60.00040 * 10 9 8 12 12 C 1.52995 * 109.47137 * 300.00055 * 10 9 8 13 13 C 1.53001 * 109.47355 * 179.97438 * 10 9 8 14 14 C 1.50694 * 109.47168 * 180.02562 * 13 10 9 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.54390 * 102.25136 * 325.86561 * 6 5 3 23 23 O 1.43234 * 107.58579 * 21.35497 * 22 6 5 24 24 H 1.09000 * 109.46649 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47117 * 299.99840 * 1 2 3 26 26 H 1.08996 * 109.46918 * 60.00626 * 1 2 3 27 27 H 1.09004 * 109.47387 * 240.00025 * 2 1 3 28 28 H 1.08997 * 109.47310 * 119.99734 * 2 1 3 29 29 H 1.09003 * 111.12907 * 37.43686 * 5 3 2 30 30 H 1.08999 * 111.12450 * 273.27968 * 5 3 2 31 31 H 1.00908 * 110.99499 * 328.95063 * 8 6 5 32 32 H 1.09002 * 109.47091 * 59.99841 * 9 8 6 33 33 H 1.08992 * 109.47497 * 299.99732 * 9 8 6 34 34 H 1.08998 * 109.46768 * 180.02562 * 11 10 9 35 35 H 1.08995 * 109.47095 * 300.00011 * 11 10 9 36 36 H 1.09000 * 109.47156 * 60.00290 * 11 10 9 37 37 H 1.09002 * 109.47384 * 299.99783 * 12 10 9 38 38 H 1.08997 * 109.47386 * 60.00317 * 12 10 9 39 39 H 1.09007 * 109.47390 * 179.97438 * 12 10 9 40 40 H 1.09007 * 109.46922 * 59.99890 * 13 10 9 41 41 H 1.09003 * 109.46836 * 300.00646 * 13 10 9 42 42 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.82438 * 140.87436 * 22 6 5 44 44 H 1.08999 * 109.82690 * 261.84192 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5845 2.0042 0.8155 5 6 3.5840 1.4672 0.1266 6 6 3.9115 2.8385 -0.5245 7 1 3.8126 3.6460 0.2010 8 7 5.2573 2.8297 -1.1134 9 6 5.8074 4.1897 -1.1898 10 6 7.2068 4.1399 -1.8063 11 6 7.1235 3.5436 -3.2129 12 6 8.1165 3.2699 -0.9366 13 6 7.7795 5.5564 -1.8865 14 6 9.1576 5.5074 -2.4943 15 1 9.5824 4.5607 -2.7938 16 6 9.8763 6.6712 -2.6679 17 7 9.3588 7.8241 -2.3036 18 14 11.5848 6.6103 -3.4207 19 1 12.1406 7.9852 -3.4986 20 1 12.4678 5.7660 -2.5766 21 1 11.5039 6.0315 -4.7858 22 6 2.8319 2.9457 -1.6230 23 8 1.7570 2.0714 -1.2601 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0372 0.6486 -0.4326 30 1 3.8929 1.4447 1.1717 31 1 5.8734 2.2189 -0.5981 32 1 5.8671 4.6143 -0.1876 33 1 5.1591 4.8096 -1.8090 34 1 8.1205 3.5078 -3.6518 35 1 6.7153 2.5346 -3.1561 36 1 6.4754 4.1635 -3.8324 37 1 8.1759 3.6946 0.0655 38 1 7.7084 2.2608 -0.8800 39 1 9.1134 3.2340 -1.3761 40 1 7.8388 5.9816 -0.8845 41 1 7.1312 6.1758 -2.5062 42 1 9.8646 8.6428 -2.4254 43 1 2.4691 3.9716 -1.6858 44 1 3.2492 2.6404 -2.5825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594952795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:11 Heat of formation + Delta-G solvation = -75.038571 kcal Electronic energy + Delta-G solvation = -19578.882917 eV Core-core repulsion = 16722.984556 eV Total energy + Delta-G solvation = -2855.898361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75957 -37.47769 -34.47862 -33.64822 -32.28321 -30.09610 -27.88792 -26.82695 -26.35769 -25.11275 -23.64985 -22.40347 -21.41314 -20.25658 -17.91709 -17.06851 -16.24846 -16.05406 -15.18436 -14.77091 -14.53365 -14.36601 -13.80192 -13.72054 -13.34010 -13.19365 -12.93553 -12.64773 -12.06814 -11.99778 -11.85142 -11.72609 -11.43628 -11.24667 -11.07313 -10.94666 -10.87321 -10.78376 -10.67781 -10.50334 -10.25890 -10.13564 -9.70710 -9.49136 -9.03446 -8.85143 -8.32103 -8.21395 -5.96769 -3.97065 3.34300 3.39035 3.41158 3.73154 4.23247 4.35143 4.48817 4.64771 4.87929 4.99719 5.06326 5.12280 5.31758 5.38607 5.39064 5.59525 5.61941 5.65851 5.71891 5.74302 5.75894 5.86508 5.95278 5.97919 6.07301 6.11109 6.22532 6.31323 6.47662 6.63920 6.76621 6.81242 7.00381 7.18405 7.19039 7.24497 7.34985 7.58813 7.69145 7.83977 8.03237 8.47404 9.08056 9.65729 11.14887 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.057895 B = 0.003521 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.521708 B = 7949.937586 C = 8067.917762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.083 3.917 4 H 0.067 0.933 5 C -0.156 4.156 6 C 0.052 3.948 7 H 0.058 0.942 8 N -0.674 5.674 9 C 0.068 3.932 10 C -0.059 4.059 11 C -0.116 4.116 12 C -0.129 4.129 13 C 0.034 3.966 14 C -0.508 4.508 15 H 0.059 0.941 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.289 1.289 20 H -0.278 1.278 21 H -0.277 1.277 22 C 0.060 3.940 23 O -0.380 6.380 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.343 0.657 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.012 0.988 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.063 0.937 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.467 -13.545 5.841 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.025 3.975 4 H 0.085 0.915 5 C -0.194 4.194 6 C -0.059 4.059 7 H 0.076 0.924 8 N -0.307 5.307 9 C -0.060 4.060 10 C -0.059 4.059 11 C -0.174 4.174 12 C -0.186 4.186 13 C -0.003 4.003 14 C -0.546 4.546 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.214 1.214 20 H -0.204 1.204 21 H -0.203 1.203 22 C -0.017 4.017 23 O -0.300 6.300 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.163 0.837 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.030 0.970 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.843 -13.379 5.079 19.911 hybrid contribution 1.426 0.501 0.704 1.668 sum -12.417 -12.878 5.783 18.801 Atomic orbital electron populations 1.21720 0.95394 1.01364 1.02229 1.21664 0.96692 0.94993 1.02586 1.22890 0.93737 0.93841 0.87049 0.91488 1.23498 0.96158 0.98153 1.01594 1.23059 0.91569 0.96522 0.94716 0.92369 1.60570 1.01988 1.11932 1.56248 1.22205 0.97113 0.87933 0.98769 1.20635 0.91288 0.99154 0.94817 1.21603 1.01103 0.98773 0.95880 1.21769 1.00794 0.96952 0.99113 1.19117 0.95519 0.88855 0.96839 1.21196 1.00634 0.92815 1.39979 0.92338 1.25019 0.97962 0.95676 0.95927 1.69957 1.37742 0.97859 1.48204 0.86719 0.84878 0.76911 0.79852 1.21436 1.20365 1.20294 1.23180 0.86208 0.93565 0.98796 1.88402 1.43000 1.60830 1.37744 0.92912 0.92977 0.91996 0.91092 0.90989 0.89377 0.90264 0.83717 0.95702 0.91478 0.92652 0.93908 0.94135 0.94109 0.94849 0.91647 0.96952 0.96672 0.93091 0.91882 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.85 37.16 0.37 -0.87 16 2 C -0.12 -1.06 5.66 -26.73 -0.15 -1.21 16 3 C 0.08 0.85 3.41 -25.70 -0.09 0.76 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.16 -1.57 5.96 -24.48 -0.15 -1.72 16 6 C 0.05 0.64 3.34 -65.76 -0.22 0.42 16 7 H 0.06 0.73 7.83 -51.93 -0.41 0.32 16 8 N -0.67 -9.42 5.54 -104.68 -0.58 -10.00 16 9 C 0.07 1.15 4.51 -3.83 -0.02 1.14 16 10 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 11 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 12 C -0.13 -2.34 7.89 37.15 0.29 -2.05 16 13 C 0.03 0.86 4.04 -27.89 -0.11 0.74 16 14 C -0.51 -13.83 7.65 -34.44 -0.26 -14.09 16 15 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.06 0.77 7.56 37.89 0.29 1.06 16 23 O -0.38 -4.96 10.81 -35.23 -0.38 -5.34 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.59 7.99 -51.93 -0.42 0.17 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.34 4.54 6.47 -39.29 -0.25 4.28 16 32 H 0.02 0.42 8.08 -51.93 -0.42 0.01 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 35 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 39 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 40 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.16 8.02 -51.93 -0.42 0.74 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -29.03 340.03 -8.32 -37.35 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.26 Total: -0.05 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 0.06 Total: -17.53 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.16 Total: -36.09 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.38 Total: -5.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.03 -8.32 -37.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594952795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.685 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds