Wall clock time and date at job start Mon Mar 30 2020 07:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46795 * 2 1 4 4 H 1.08997 * 110.27605 * 52.90706 * 3 2 1 5 5 C 1.54946 * 110.30882 * 175.00114 * 3 2 1 6 6 C 1.55301 * 100.94396 * 155.35822 * 5 3 2 7 7 H 1.09002 * 110.84992 * 84.25881 * 6 5 3 8 8 N 1.46903 * 110.85134 * 207.67816 * 6 5 3 9 9 C 1.46893 * 111.00119 * 204.99967 * 8 6 5 10 10 C 1.53000 * 109.47186 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46927 * 60.00040 * 10 9 8 12 12 C 1.52995 * 109.47137 * 300.00055 * 10 9 8 13 13 C 1.53001 * 109.47355 * 179.97438 * 10 9 8 14 14 C 1.50694 * 109.47168 * 180.02562 * 13 10 9 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.54390 * 102.25136 * 325.86561 * 6 5 3 23 23 O 1.43234 * 107.58579 * 21.35497 * 22 6 5 24 24 H 1.09000 * 109.46649 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47117 * 299.99840 * 1 2 3 26 26 H 1.08996 * 109.46918 * 60.00626 * 1 2 3 27 27 H 1.09004 * 109.47387 * 240.00025 * 2 1 3 28 28 H 1.08997 * 109.47310 * 119.99734 * 2 1 3 29 29 H 1.09003 * 111.12907 * 37.43686 * 5 3 2 30 30 H 1.08999 * 111.12450 * 273.27968 * 5 3 2 31 31 H 1.00908 * 110.99499 * 328.95063 * 8 6 5 32 32 H 1.09002 * 109.47091 * 59.99841 * 9 8 6 33 33 H 1.08992 * 109.47497 * 299.99732 * 9 8 6 34 34 H 1.08998 * 109.46768 * 180.02562 * 11 10 9 35 35 H 1.08995 * 109.47095 * 300.00011 * 11 10 9 36 36 H 1.09000 * 109.47156 * 60.00290 * 11 10 9 37 37 H 1.09002 * 109.47384 * 299.99783 * 12 10 9 38 38 H 1.08997 * 109.47386 * 60.00317 * 12 10 9 39 39 H 1.09007 * 109.47390 * 179.97438 * 12 10 9 40 40 H 1.09007 * 109.46922 * 59.99890 * 13 10 9 41 41 H 1.09003 * 109.46836 * 300.00646 * 13 10 9 42 42 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.82438 * 140.87436 * 22 6 5 44 44 H 1.08999 * 109.82690 * 261.84192 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5845 2.0042 0.8155 5 6 3.5840 1.4672 0.1266 6 6 3.9115 2.8385 -0.5245 7 1 3.8126 3.6460 0.2010 8 7 5.2573 2.8297 -1.1134 9 6 5.8074 4.1897 -1.1898 10 6 7.2068 4.1399 -1.8063 11 6 7.1235 3.5436 -3.2129 12 6 8.1165 3.2699 -0.9366 13 6 7.7795 5.5564 -1.8865 14 6 9.1576 5.5074 -2.4943 15 1 9.5824 4.5607 -2.7938 16 6 9.8763 6.6712 -2.6679 17 7 9.3588 7.8241 -2.3036 18 14 11.5848 6.6103 -3.4207 19 1 12.1406 7.9852 -3.4986 20 1 12.4678 5.7660 -2.5766 21 1 11.5039 6.0315 -4.7858 22 6 2.8319 2.9457 -1.6230 23 8 1.7570 2.0714 -1.2601 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0372 0.6486 -0.4326 30 1 3.8929 1.4447 1.1717 31 1 5.8734 2.2189 -0.5981 32 1 5.8671 4.6143 -0.1876 33 1 5.1591 4.8096 -1.8090 34 1 8.1205 3.5078 -3.6518 35 1 6.7153 2.5346 -3.1561 36 1 6.4754 4.1635 -3.8324 37 1 8.1759 3.6946 0.0655 38 1 7.7084 2.2608 -0.8800 39 1 9.1134 3.2340 -1.3761 40 1 7.8388 5.9816 -0.8845 41 1 7.1312 6.1758 -2.5062 42 1 9.8646 8.6428 -2.4254 43 1 2.4691 3.9716 -1.6858 44 1 3.2492 2.6404 -2.5825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594952795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:11 Heat of formation + Delta-G solvation = -92.430960 kcal Electronic energy + Delta-G solvation = -19579.637108 eV Core-core repulsion = 16722.984556 eV Total energy + Delta-G solvation = -2856.652552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71696 -38.96274 -35.82238 -34.47875 -34.20475 -31.18464 -29.12970 -28.48901 -27.88941 -26.61652 -24.71610 -23.99466 -22.28325 -21.19018 -19.53149 -18.32944 -17.98045 -17.11256 -16.53126 -16.18499 -15.89755 -15.51361 -15.16921 -14.83825 -14.46342 -14.28207 -14.14065 -13.91047 -13.88187 -13.48696 -13.00769 -12.79627 -12.69198 -12.60883 -12.43603 -12.33276 -12.23249 -12.13037 -12.01593 -11.92116 -11.71943 -11.48345 -11.38125 -10.85929 -10.72666 -10.50081 -10.43228 -9.39540 -8.14117 -6.21179 1.40984 1.43178 1.50420 2.43638 2.82152 3.19356 3.19850 3.45773 3.82575 4.05967 4.13694 4.15971 4.19831 4.29435 4.33948 4.39109 4.50506 4.64050 4.69563 4.77272 4.81512 4.87423 4.92780 4.94749 5.02397 5.08075 5.09505 5.12483 5.21952 5.22310 5.31676 5.45163 5.51859 5.54069 5.58740 5.65030 5.86863 5.92625 6.03859 6.11341 6.36337 6.48629 6.93981 7.46199 8.98088 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.057895 B = 0.003521 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.521708 B = 7949.937586 C = 8067.917762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.076 3.924 4 H 0.074 0.926 5 C -0.145 4.145 6 C 0.051 3.949 7 H 0.058 0.942 8 N -0.669 5.669 9 C 0.082 3.918 10 C -0.055 4.055 11 C -0.107 4.107 12 C -0.122 4.122 13 C 0.040 3.960 14 C -0.515 4.515 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.956 3.044 19 H -0.288 1.288 20 H -0.267 1.267 21 H -0.269 1.269 22 C 0.060 3.940 23 O -0.397 6.397 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.351 0.649 32 H 0.021 0.979 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.046 0.954 40 H -0.016 1.016 41 H -0.017 1.017 42 H 0.260 0.740 43 H 0.059 0.941 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 -15.857 6.532 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C 0.019 3.981 4 H 0.092 0.908 5 C -0.183 4.183 6 C -0.059 4.059 7 H 0.076 0.924 8 N -0.303 5.303 9 C -0.047 4.047 10 C -0.056 4.056 11 C -0.165 4.165 12 C -0.179 4.179 13 C 0.002 3.998 14 C -0.553 4.553 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.781 3.219 19 H -0.214 1.214 20 H -0.192 1.192 21 H -0.194 1.194 22 C -0.017 4.017 23 O -0.317 6.317 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.172 0.828 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.003 0.997 41 H 0.001 0.999 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.702 -15.721 5.774 21.639 hybrid contribution 1.300 1.216 0.505 1.850 sum -12.403 -14.505 6.279 20.091 Atomic orbital electron populations 1.21715 0.95256 1.02043 1.01658 1.21680 0.96822 0.93895 1.03276 1.23118 0.94137 0.94757 0.86105 0.90813 1.23469 0.95802 0.96425 1.02607 1.23065 0.90103 0.98201 0.94534 0.92377 1.60445 1.02816 1.10003 1.57011 1.21888 0.95269 0.89600 0.97987 1.20496 0.93053 0.95966 0.96047 1.21508 1.00008 0.99896 0.95044 1.21683 0.99510 0.98525 0.98224 1.19003 0.94707 0.91832 0.94216 1.21598 1.01440 0.93058 1.39204 0.91542 1.25927 1.02223 0.95383 0.96601 1.70104 1.39490 0.98570 1.49819 0.85635 0.79965 0.76972 0.79304 1.21411 1.19174 1.19390 1.23096 0.86582 0.93434 0.98581 1.88394 1.43115 1.61002 1.39191 0.91646 0.92336 0.93777 0.91792 0.88830 0.89110 0.88163 0.82766 0.96054 0.92693 0.94255 0.91324 0.95253 0.94344 0.91211 0.93453 0.99735 0.99907 0.93168 0.92307 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.85 71.98 0.71 -1.48 16 2 C -0.12 -1.78 5.66 30.60 0.17 -1.61 16 3 C 0.08 1.40 3.41 31.26 0.11 1.51 16 4 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 5 C -0.15 -2.50 5.96 32.05 0.19 -2.30 16 6 C 0.05 1.17 3.34 46.18 0.15 1.32 16 7 H 0.06 1.36 7.83 -2.39 -0.02 1.34 16 8 N -0.67 -17.35 5.54 -485.09 -2.69 -20.03 16 9 C 0.08 2.72 4.51 86.30 0.39 3.10 16 10 C -0.06 -2.15 0.60 -52.18 -0.03 -2.18 16 11 C -0.11 -4.03 8.06 71.98 0.58 -3.45 16 12 C -0.12 -4.24 7.89 71.98 0.57 -3.67 16 13 C 0.04 2.06 4.04 29.85 0.12 2.18 16 14 C -0.51 -28.40 7.65 25.60 0.20 -28.20 16 15 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 16 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 17 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 18 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 C 0.06 1.53 7.56 72.45 0.55 2.07 16 23 O -0.40 -9.95 10.81 -148.98 -1.61 -11.56 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.79 7.99 -2.39 -0.02 0.78 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.55 8.06 -2.39 -0.02 1.53 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.35 8.15 6.47 -89.69 -0.58 7.57 16 32 H 0.02 0.72 8.08 -2.39 -0.02 0.70 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 35 H 0.07 2.21 7.60 -2.39 -0.02 2.19 16 36 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.91 6.57 -2.39 -0.02 1.89 16 39 H 0.05 1.81 6.62 -2.38 -0.02 1.79 16 40 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 1.95 8.02 -2.39 -0.02 1.93 16 Total: -1.00 -63.37 340.03 2.54 -60.83 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.36 Total: 14.08 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 4.17 Total: -32.50 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -2.40 Total: -77.26 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -1.61 Total: -11.56 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -63.37 2.54 -60.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594952795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.600 kcal (2) G-P(sol) polarization free energy of solvation -63.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds