Wall clock time and date at job start Mon Mar 30 2020 07:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47434 * 2 1 4 4 H 1.08998 * 109.89758 * 305.93001 * 3 2 1 5 5 C 1.54381 * 109.83100 * 185.00171 * 3 2 1 6 6 C 1.55313 * 102.25095 * 219.13273 * 5 3 2 7 7 H 1.09002 * 111.12132 * 276.16990 * 6 5 3 8 8 N 1.46904 * 111.12516 * 152.05429 * 6 5 3 9 9 C 1.46896 * 111.00095 * 154.99844 * 8 6 5 10 10 C 1.52997 * 109.47114 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46991 * 60.00363 * 10 9 8 12 12 C 1.52997 * 109.47232 * 299.99800 * 10 9 8 13 13 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99933 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99912 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47017 * 89.99937 * 18 16 14 20 20 H 1.48507 * 109.47241 * 209.99826 * 18 16 14 21 21 H 1.48500 * 109.47209 * 329.99791 * 18 16 14 22 22 C 1.54938 * 100.94246 * 34.13258 * 6 5 3 23 23 O 1.43241 * 109.82962 * 66.86624 * 3 2 1 24 24 H 1.08992 * 109.47273 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46946 * 299.99914 * 1 2 3 26 26 H 1.09005 * 109.46849 * 59.99695 * 1 2 3 27 27 H 1.09002 * 109.46946 * 240.00086 * 2 1 3 28 28 H 1.09005 * 109.46849 * 120.00305 * 2 1 3 29 29 H 1.09000 * 110.85171 * 100.94375 * 5 3 2 30 30 H 1.09005 * 111.02213 * 337.39397 * 5 3 2 31 31 H 1.00899 * 110.99247 * 278.94908 * 8 6 5 32 32 H 1.09001 * 109.47267 * 59.99263 * 9 8 6 33 33 H 1.09004 * 109.47041 * 299.99667 * 9 8 6 34 34 H 1.09000 * 109.47160 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.46719 * 299.99711 * 11 10 9 36 36 H 1.08993 * 109.47839 * 59.99553 * 11 10 9 37 37 H 1.09001 * 109.47375 * 299.99867 * 12 10 9 38 38 H 1.09002 * 109.46777 * 60.00422 * 12 10 9 39 39 H 1.09000 * 109.47140 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.46801 * 300.00272 * 13 10 9 41 41 H 1.09001 * 109.46998 * 59.99868 * 13 10 9 42 42 H 0.97007 * 120.00011 * 180.02562 * 17 16 14 43 43 H 1.08994 * 110.31253 * 82.47028 * 22 6 5 44 44 H 1.09004 * 110.30803 * 204.64737 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5967 1.9927 -0.8299 5 6 3.5786 1.4539 -0.1266 6 6 3.9799 2.6052 0.8354 7 1 3.9084 3.5737 0.3403 8 7 5.3263 2.3925 1.3832 9 6 5.9404 3.6664 1.7803 10 6 7.3380 3.4047 2.3452 11 6 8.2025 2.7331 1.2764 12 6 7.2314 2.4877 3.5653 13 6 7.9780 4.7317 2.7583 14 6 9.3543 4.4738 3.3153 15 1 9.7347 3.4644 3.3689 16 6 10.1282 5.5265 3.7555 17 7 11.3295 5.3014 4.2411 18 14 9.4705 7.2723 3.6621 19 1 8.7521 7.5986 4.9201 20 1 10.6007 8.2180 3.4780 21 1 8.5359 7.3885 2.5139 22 6 2.8995 2.4587 1.9363 23 8 1.7030 2.0770 1.2391 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8821 1.6791 -1.1490 30 1 4.0052 0.5065 0.2032 31 1 5.3036 1.7453 2.1569 32 1 5.3247 4.1448 2.5420 33 1 6.0160 4.3199 0.9112 34 1 9.1983 2.5470 1.6787 35 1 7.7468 1.7878 0.9817 36 1 8.2785 3.3863 0.4072 37 1 6.6155 2.9662 4.3268 38 1 6.7757 1.5424 3.2706 39 1 8.2271 2.3008 3.9675 40 1 8.0539 5.3846 1.8888 41 1 7.3621 5.2106 3.5196 42 1 11.8739 6.0421 4.5512 43 1 3.1865 1.6841 2.6473 44 1 2.7514 3.4087 2.4498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594952807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:14 Heat of formation + Delta-G solvation = -72.120714 kcal Electronic energy + Delta-G solvation = -19655.777733 eV Core-core repulsion = 16800.005899 eV Total energy + Delta-G solvation = -2855.771834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92381 -37.61116 -34.57778 -33.60466 -32.26099 -30.26178 -28.10047 -27.34554 -26.40758 -25.02424 -23.78199 -22.05904 -21.27535 -20.66727 -18.01549 -17.09623 -16.75875 -16.14007 -15.25441 -14.83322 -14.22162 -14.15962 -14.10534 -13.63760 -13.58862 -13.13111 -13.07127 -12.70388 -12.31115 -12.15377 -12.02169 -11.82273 -11.65801 -11.20524 -11.13490 -11.07468 -10.94668 -10.87531 -10.77100 -10.51970 -10.34980 -9.84468 -9.69678 -9.65818 -9.32004 -8.92272 -8.50820 -8.23672 -6.01067 -3.97413 3.31171 3.39195 3.42407 3.58935 4.27839 4.44362 4.47278 4.65463 4.73406 4.91135 4.96758 5.04492 5.20322 5.31762 5.36003 5.48069 5.56888 5.58671 5.61664 5.67462 5.72140 5.80284 5.83489 5.87979 6.03411 6.08176 6.12592 6.20406 6.37195 6.55643 6.65461 6.77239 6.85976 7.04581 7.10447 7.14882 7.23210 7.30061 7.42506 7.52702 7.83949 8.58419 9.04681 9.61991 11.12029 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.046097 B = 0.003813 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.270939 B = 7341.127397 C = 7575.363597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.077 3.923 4 H 0.078 0.922 5 C -0.140 4.140 6 C 0.055 3.945 7 H 0.092 0.908 8 N -0.670 5.670 9 C 0.066 3.934 10 C -0.049 4.049 11 C -0.118 4.118 12 C -0.131 4.131 13 C -0.004 4.004 14 C -0.507 4.507 15 H 0.078 0.922 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.876 3.124 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.267 1.267 22 C 0.023 3.977 23 O -0.377 6.377 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.343 0.657 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.015 0.985 41 H 0.008 0.992 42 H 0.261 0.739 43 H 0.059 0.941 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.479 -8.361 -8.182 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.019 3.981 4 H 0.096 0.904 5 C -0.178 4.178 6 C -0.056 4.056 7 H 0.110 0.890 8 N -0.302 5.302 9 C -0.063 4.063 10 C -0.050 4.050 11 C -0.175 4.175 12 C -0.189 4.189 13 C -0.042 4.042 14 C -0.545 4.545 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.056 4.056 23 O -0.296 6.296 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.163 0.837 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.224 -8.250 -8.652 21.795 hybrid contribution -0.504 1.268 0.825 1.594 sum -18.728 -6.982 -7.827 21.465 Atomic orbital electron populations 1.21706 0.95484 1.01261 1.02154 1.21902 0.96739 0.96002 1.02414 1.22806 0.94652 0.93382 0.87229 0.90429 1.23135 0.93765 0.99944 1.00975 1.23284 0.88300 0.99189 0.94868 0.89031 1.60518 1.17332 1.13588 1.38801 1.22220 0.95801 0.89637 0.98606 1.20431 0.91950 0.97722 0.94867 1.21612 0.99788 0.98828 0.97273 1.21792 1.02643 0.97168 0.97262 1.19630 0.96571 0.92162 0.95842 1.21131 0.97973 0.95512 1.39924 0.90415 1.25017 0.94766 0.98840 0.94969 1.69910 1.09856 1.31755 1.42983 0.86848 0.78648 0.85299 0.78861 1.20506 1.21541 1.19138 1.24154 0.85840 1.00060 0.95525 1.88414 1.29448 1.78458 1.33237 0.93020 0.92120 0.92972 0.91077 0.91539 0.89914 0.89937 0.83676 0.95680 0.91411 0.92075 0.93693 0.94202 0.94089 0.94636 0.91064 0.96695 0.97384 0.92874 0.92258 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.83 37.16 0.37 -0.85 16 2 C -0.13 -1.14 5.51 -26.73 -0.15 -1.28 16 3 C 0.08 0.75 3.51 -26.01 -0.09 0.66 16 4 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.14 -1.38 6.24 -24.78 -0.15 -1.54 16 6 C 0.06 0.63 3.44 -65.46 -0.23 0.40 16 7 H 0.09 1.08 7.83 -51.93 -0.41 0.67 16 8 N -0.67 -8.78 5.64 -104.36 -0.59 -9.37 16 9 C 0.07 1.03 4.51 -3.83 -0.02 1.01 16 10 C -0.05 -0.92 0.60 -154.51 -0.09 -1.02 16 11 C -0.12 -2.20 8.06 37.16 0.30 -1.90 16 12 C -0.13 -2.34 7.89 37.16 0.29 -2.05 16 13 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 14 C -0.51 -13.87 8.20 -34.44 -0.28 -14.15 16 15 H 0.08 2.27 5.92 -52.48 -0.31 1.96 16 16 C 0.06 1.85 5.47 -17.82 -0.10 1.76 16 17 N -0.91 -27.66 13.96 55.43 0.77 -26.88 16 18 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 22 C 0.02 0.26 7.38 38.18 0.28 0.54 16 23 O -0.38 -4.54 10.65 -35.23 -0.38 -4.91 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 31 H 0.34 4.34 6.21 -39.29 -0.24 4.10 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 34 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 35 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 39 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 40 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 41 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.06 0.65 7.73 -51.93 -0.40 0.25 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 335.68 15.07 5.06 5.06 Total: -1.00 -29.27 335.68 -7.94 -37.21 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.19 Total: 0.51 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 0.04 Total: -18.60 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.19 Total: -36.25 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.38 Total: -4.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.27 -7.94 -37.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594952807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.910 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds