Wall clock time and date at job start Mon Mar 30 2020 07:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47434 * 2 1 4 4 H 1.08998 * 109.89758 * 305.93001 * 3 2 1 5 5 C 1.54381 * 109.83100 * 185.00171 * 3 2 1 6 6 C 1.55313 * 102.25095 * 219.13273 * 5 3 2 7 7 H 1.09002 * 111.12132 * 276.16990 * 6 5 3 8 8 N 1.46904 * 111.12516 * 152.05429 * 6 5 3 9 9 C 1.46896 * 111.00095 * 154.99844 * 8 6 5 10 10 C 1.52997 * 109.47114 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46991 * 60.00363 * 10 9 8 12 12 C 1.52997 * 109.47232 * 299.99800 * 10 9 8 13 13 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99933 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99912 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47017 * 89.99937 * 18 16 14 20 20 H 1.48507 * 109.47241 * 209.99826 * 18 16 14 21 21 H 1.48500 * 109.47209 * 329.99791 * 18 16 14 22 22 C 1.54938 * 100.94246 * 34.13258 * 6 5 3 23 23 O 1.43241 * 109.82962 * 66.86624 * 3 2 1 24 24 H 1.08992 * 109.47273 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46946 * 299.99914 * 1 2 3 26 26 H 1.09005 * 109.46849 * 59.99695 * 1 2 3 27 27 H 1.09002 * 109.46946 * 240.00086 * 2 1 3 28 28 H 1.09005 * 109.46849 * 120.00305 * 2 1 3 29 29 H 1.09000 * 110.85171 * 100.94375 * 5 3 2 30 30 H 1.09005 * 111.02213 * 337.39397 * 5 3 2 31 31 H 1.00899 * 110.99247 * 278.94908 * 8 6 5 32 32 H 1.09001 * 109.47267 * 59.99263 * 9 8 6 33 33 H 1.09004 * 109.47041 * 299.99667 * 9 8 6 34 34 H 1.09000 * 109.47160 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.46719 * 299.99711 * 11 10 9 36 36 H 1.08993 * 109.47839 * 59.99553 * 11 10 9 37 37 H 1.09001 * 109.47375 * 299.99867 * 12 10 9 38 38 H 1.09002 * 109.46777 * 60.00422 * 12 10 9 39 39 H 1.09000 * 109.47140 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.46801 * 300.00272 * 13 10 9 41 41 H 1.09001 * 109.46998 * 59.99868 * 13 10 9 42 42 H 0.97007 * 120.00011 * 180.02562 * 17 16 14 43 43 H 1.08994 * 110.31253 * 82.47028 * 22 6 5 44 44 H 1.09004 * 110.30803 * 204.64737 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5967 1.9927 -0.8299 5 6 3.5786 1.4539 -0.1266 6 6 3.9799 2.6052 0.8354 7 1 3.9084 3.5737 0.3403 8 7 5.3263 2.3925 1.3832 9 6 5.9404 3.6664 1.7803 10 6 7.3380 3.4047 2.3452 11 6 8.2025 2.7331 1.2764 12 6 7.2314 2.4877 3.5653 13 6 7.9780 4.7317 2.7583 14 6 9.3543 4.4738 3.3153 15 1 9.7347 3.4644 3.3689 16 6 10.1282 5.5265 3.7555 17 7 11.3295 5.3014 4.2411 18 14 9.4705 7.2723 3.6621 19 1 8.7521 7.5986 4.9201 20 1 10.6007 8.2180 3.4780 21 1 8.5359 7.3885 2.5139 22 6 2.8995 2.4587 1.9363 23 8 1.7030 2.0770 1.2391 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8821 1.6791 -1.1490 30 1 4.0052 0.5065 0.2032 31 1 5.3036 1.7453 2.1569 32 1 5.3247 4.1448 2.5420 33 1 6.0160 4.3199 0.9112 34 1 9.1983 2.5470 1.6787 35 1 7.7468 1.7878 0.9817 36 1 8.2785 3.3863 0.4072 37 1 6.6155 2.9662 4.3268 38 1 6.7757 1.5424 3.2706 39 1 8.2271 2.3008 3.9675 40 1 8.0539 5.3846 1.8888 41 1 7.3621 5.2106 3.5196 42 1 11.8739 6.0421 4.5512 43 1 3.1865 1.6841 2.6473 44 1 2.7514 3.4087 2.4498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594952807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:13 Heat of formation + Delta-G solvation = -90.264814 kcal Electronic energy + Delta-G solvation = -19656.564520 eV Core-core repulsion = 16800.005899 eV Total energy + Delta-G solvation = -2856.558621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79206 -39.00649 -35.81756 -34.42155 -34.18901 -31.30979 -29.59650 -28.56444 -27.91622 -26.40478 -24.57429 -23.80670 -22.11466 -21.47674 -19.52624 -18.86743 -17.94585 -17.06882 -16.37442 -16.21102 -15.68728 -15.48179 -15.26011 -14.74811 -14.49587 -14.42299 -14.22128 -13.98618 -13.94356 -13.51223 -13.03084 -12.94702 -12.75577 -12.63580 -12.49203 -12.35307 -12.21166 -12.08838 -11.91733 -11.76554 -11.72257 -11.53601 -11.36727 -10.97880 -10.79152 -10.69870 -10.47163 -9.29218 -8.21649 -6.21900 1.35640 1.37790 1.48528 2.39529 2.73639 3.13562 3.33972 3.61950 3.83338 3.93539 4.09578 4.15089 4.19965 4.24253 4.31873 4.32721 4.51049 4.62850 4.67117 4.77447 4.78347 4.84029 4.91263 4.95236 5.04144 5.07727 5.08416 5.12163 5.14513 5.19321 5.34172 5.38172 5.43780 5.45494 5.53025 5.62484 5.76186 5.82181 6.02411 6.12883 6.41273 6.46065 6.85756 7.40686 8.94614 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.046097 B = 0.003813 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.270939 B = 7341.127397 C = 7575.363597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.075 3.925 4 H 0.085 0.915 5 C -0.133 4.133 6 C 0.056 3.944 7 H 0.090 0.910 8 N -0.668 5.668 9 C 0.079 3.921 10 C -0.049 4.049 11 C -0.109 4.109 12 C -0.125 4.125 13 C -0.004 4.004 14 C -0.503 4.503 15 H 0.045 0.955 16 C 0.000 4.000 17 N -0.955 5.955 18 Si 0.940 3.060 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.249 1.249 22 C 0.024 3.976 23 O -0.394 6.394 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.347 0.653 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.035 0.965 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.262 0.738 43 H 0.062 0.938 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.848 -8.343 -9.383 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.017 3.983 4 H 0.102 0.898 5 C -0.171 4.171 6 C -0.055 4.055 7 H 0.109 0.891 8 N -0.301 5.301 9 C -0.051 4.051 10 C -0.049 4.049 11 C -0.166 4.166 12 C -0.183 4.183 13 C -0.041 4.041 14 C -0.541 4.541 15 H 0.063 0.937 16 C -0.195 4.195 17 N -0.597 5.597 18 Si 0.765 3.235 19 H -0.196 1.196 20 H -0.216 1.216 21 H -0.172 1.172 22 C -0.054 4.054 23 O -0.313 6.313 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.620 -8.247 -9.866 24.301 hybrid contribution 0.234 1.156 1.185 1.672 sum -20.386 -7.091 -8.680 23.264 Atomic orbital electron populations 1.21695 0.95321 1.01813 1.01686 1.21903 0.96879 0.95250 1.02854 1.22940 0.94667 0.94065 0.86612 0.89763 1.23098 0.93712 0.99280 1.01005 1.23286 0.87209 0.99859 0.95154 0.89144 1.60460 1.18499 1.12289 1.38808 1.21943 0.93728 0.90847 0.98534 1.20360 0.93740 0.95535 0.95312 1.21513 0.98184 0.99969 0.96967 1.21707 1.00932 0.98667 0.96958 1.19603 0.94387 0.94693 0.95457 1.21439 0.99849 0.94040 1.38788 0.93718 1.25926 0.95010 1.03557 0.95048 1.70066 1.11575 1.33081 1.45013 0.85802 0.78259 0.79731 0.79687 1.19620 1.21558 1.17230 1.24128 0.85652 1.00148 0.95486 1.88405 1.29949 1.78817 1.34155 0.92006 0.93647 0.92355 0.89516 0.92179 0.89032 0.89795 0.83238 0.95156 0.91421 0.95411 0.91388 0.94344 0.93625 0.91493 0.94534 0.96852 0.97015 0.92916 0.91968 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.83 71.98 0.71 -1.42 16 2 C -0.13 -1.93 5.51 30.59 0.17 -1.76 16 3 C 0.07 1.28 3.51 31.06 0.11 1.39 16 4 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.13 -2.24 6.24 31.86 0.20 -2.04 16 6 C 0.06 1.12 3.44 46.37 0.16 1.28 16 7 H 0.09 1.87 7.83 -2.39 -0.02 1.85 16 8 N -0.67 -15.56 5.64 -484.08 -2.73 -18.29 16 9 C 0.08 2.25 4.51 86.30 0.39 2.64 16 10 C -0.05 -1.77 0.60 -52.18 -0.03 -1.81 16 11 C -0.11 -4.00 8.06 71.98 0.58 -3.42 16 12 C -0.13 -4.34 7.89 71.98 0.57 -3.77 16 13 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 14 C -0.50 -28.05 8.20 25.60 0.21 -27.84 16 15 H 0.04 2.73 5.92 -2.91 -0.02 2.72 16 16 C 0.00 0.01 5.47 84.65 0.46 0.47 16 17 N -0.96 -60.07 13.96 21.45 0.30 -59.77 16 18 Si 0.94 44.54 27.47 68.60 1.88 46.42 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.25 -10.95 6.54 99.48 0.65 -10.29 16 22 C 0.02 0.49 7.38 72.64 0.54 1.03 16 23 O -0.39 -8.71 10.65 -148.98 -1.59 -10.30 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.04 0.79 7.90 -2.39 -0.02 0.77 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.41 7.86 -2.38 -0.02 1.39 16 31 H 0.35 7.69 6.21 -89.69 -0.56 7.13 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.97 8.09 -2.38 -0.02 1.95 16 34 H 0.03 1.17 6.62 -2.39 -0.02 1.16 16 35 H 0.07 2.15 7.60 -2.39 -0.02 2.13 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.87 6.57 -2.39 -0.02 1.85 16 39 H 0.04 1.50 6.62 -2.39 -0.02 1.49 16 40 H 0.01 0.60 7.20 -2.39 -0.02 0.59 16 41 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 42 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 43 H 0.06 1.22 7.73 -2.39 -0.02 1.20 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -63.62 335.68 2.35 -61.27 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.33 Total: 15.99 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 4.15 Total: -35.32 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.43 Total: -78.06 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -1.59 Total: -10.30 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -63.62 2.35 -61.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594952807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.997 kcal (2) G-P(sol) polarization free energy of solvation -63.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds