Wall clock time and date at job start Mon Mar 30 2020 07:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47551 * 2 1 4 4 H 1.09006 * 109.86668 * 54.54967 * 3 2 1 5 5 C 1.54095 * 109.88316 * 175.71362 * 3 2 1 6 6 C 1.54816 * 104.18734 * 121.45373 * 5 3 2 7 7 H 1.08998 * 110.93750 * 262.67371 * 6 5 3 8 8 N 1.46895 * 110.90438 * 139.08003 * 6 5 3 9 9 C 1.46906 * 110.99789 * 160.84080 * 8 6 5 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47454 * 300.00316 * 10 9 8 12 12 C 1.52997 * 109.46978 * 60.00394 * 10 9 8 13 13 C 1.52996 * 109.46891 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.46946 * 180.02562 * 13 10 9 15 15 H 1.07998 * 120.00275 * 0.02562 * 14 13 10 16 16 C 1.37885 * 119.99908 * 180.02562 * 14 13 10 17 17 N 1.31511 * 119.99697 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99899 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47418 * 89.99714 * 18 16 14 20 20 H 1.48498 * 109.47091 * 209.99774 * 18 16 14 21 21 H 1.48498 * 109.46997 * 329.99585 * 18 16 14 22 22 C 1.54997 * 102.09063 * 20.88106 * 6 5 3 23 23 O 1.43747 * 109.87750 * 293.55243 * 3 2 1 24 24 H 1.09001 * 109.46741 * 300.00141 * 1 2 3 25 25 H 1.08996 * 109.47116 * 60.00024 * 1 2 3 26 26 H 1.09000 * 109.47477 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47247 * 239.99766 * 2 1 3 28 28 H 1.09000 * 109.47162 * 120.00481 * 2 1 3 29 29 H 1.09005 * 110.48638 * 2.77933 * 5 3 2 30 30 H 1.08999 * 110.49126 * 240.12887 * 5 3 2 31 31 H 1.00902 * 111.00273 * 284.79602 * 8 6 5 32 32 H 1.08992 * 109.47459 * 299.99826 * 9 8 6 33 33 H 1.09004 * 109.47040 * 59.99976 * 9 8 6 34 34 H 1.09002 * 109.47067 * 59.99861 * 11 10 9 35 35 H 1.09000 * 109.47312 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.46930 * 299.99944 * 11 10 9 37 37 H 1.08998 * 109.47624 * 59.99457 * 12 10 9 38 38 H 1.09000 * 109.47140 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.47045 * 299.99833 * 12 10 9 40 40 H 1.09001 * 109.47372 * 300.00036 * 13 10 9 41 41 H 1.08996 * 109.47261 * 60.00575 * 13 10 9 42 42 H 0.97007 * 119.99539 * 180.02562 * 17 16 14 43 43 H 1.09007 * 110.61667 * 81.47943 * 22 6 5 44 44 H 1.08998 * 110.61987 * 204.47170 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6030 1.9899 0.8351 5 6 3.5772 1.4547 0.1083 6 6 4.0410 2.2088 -1.1617 7 1 4.3239 1.5094 -1.9484 8 7 5.1486 3.1231 -0.8533 9 6 5.8832 3.4899 -2.0714 10 6 7.0259 4.4413 -1.7108 11 6 6.4537 5.7027 -1.0610 12 6 7.9759 3.7492 -0.7314 13 6 7.7914 4.8228 -2.9794 14 6 8.9174 5.7593 -2.6242 15 1 9.0718 6.0528 -1.5964 16 6 9.7504 6.2417 -3.6114 17 7 9.5626 5.8839 -4.8630 18 14 11.1465 7.4020 -3.1710 19 1 12.3688 6.6141 -2.8702 20 1 11.4129 8.3120 -4.3138 21 1 10.7675 8.2023 -1.9789 22 6 2.7659 2.9973 -1.5550 23 8 1.6938 2.0833 -1.2392 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 3.9676 0.4370 0.1117 30 1 3.8922 1.9882 1.0051 31 1 4.8158 3.9444 -0.3706 32 1 6.2906 2.5913 -2.5345 33 1 5.2065 3.9834 -2.7691 34 1 5.9086 5.4306 -0.1572 35 1 7.2678 6.3803 -0.8038 36 1 5.7769 6.1959 -1.7589 37 1 8.3836 2.8505 -1.1942 38 1 8.7902 4.4267 -0.4748 39 1 7.4308 3.4770 0.1725 40 1 8.1992 3.9239 -3.4419 41 1 7.1149 5.3157 -3.6776 42 1 10.1489 6.2230 -5.5575 43 1 2.6803 3.9086 -0.9631 44 1 2.7713 3.2294 -2.6200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594952809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:16 Heat of formation + Delta-G solvation = -75.239677 kcal Electronic energy + Delta-G solvation = -19606.346489 eV Core-core repulsion = 16750.439408 eV Total energy + Delta-G solvation = -2855.907082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85213 -37.47076 -34.49203 -33.61690 -32.27807 -30.10839 -27.78864 -26.81589 -26.34875 -25.01793 -23.66381 -22.40189 -21.37757 -20.75671 -17.97033 -16.53883 -16.28973 -15.94237 -15.68987 -14.72866 -14.62068 -13.99823 -13.87411 -13.60750 -13.43593 -13.17390 -12.79482 -12.69096 -12.23946 -12.03823 -11.88829 -11.68199 -11.52592 -11.14772 -11.01165 -10.94966 -10.84183 -10.77196 -10.71309 -10.50835 -10.27329 -10.12666 -9.80855 -9.69354 -9.03801 -8.84324 -8.32370 -8.13214 -5.96890 -3.97077 3.32975 3.39613 3.42113 3.68967 4.39490 4.49329 4.55530 4.58913 4.84853 4.95345 4.99546 5.15166 5.21985 5.38962 5.40252 5.56657 5.60947 5.67848 5.70791 5.73160 5.74777 5.88578 5.93109 5.97074 6.01594 6.12813 6.22554 6.30009 6.47748 6.63453 6.74178 6.80370 6.81734 7.18758 7.19327 7.24002 7.35118 7.58983 7.69475 7.84136 8.03263 8.47441 9.08277 9.65791 11.14786 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.057204 B = 0.003542 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.355640 B = 7903.591094 C = 8026.092449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.074 3.926 4 H 0.065 0.935 5 C -0.142 4.142 6 C 0.058 3.942 7 H 0.092 0.908 8 N -0.673 5.673 9 C 0.068 3.932 10 C -0.059 4.059 11 C -0.129 4.129 12 C -0.116 4.116 13 C 0.034 3.966 14 C -0.507 4.507 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.017 3.983 23 O -0.373 6.373 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.340 0.660 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.032 0.968 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.580 -8.972 9.895 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.016 3.984 4 H 0.083 0.917 5 C -0.181 4.181 6 C -0.054 4.054 7 H 0.110 0.890 8 N -0.305 5.305 9 C -0.060 4.060 10 C -0.059 4.059 11 C -0.187 4.187 12 C -0.173 4.173 13 C -0.004 4.004 14 C -0.546 4.546 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.062 4.062 23 O -0.291 6.291 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.160 0.840 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.268 -9.488 9.768 19.724 hybrid contribution 0.390 1.356 -0.293 1.442 sum -13.878 -8.132 9.474 18.668 Atomic orbital electron populations 1.21722 0.95506 1.01324 1.02178 1.21717 0.96601 0.95053 1.02569 1.22817 0.94372 0.93828 0.87425 0.91734 1.22974 0.94003 1.01876 0.99200 1.23138 0.89734 0.95494 0.97015 0.88996 1.60596 1.24595 1.20116 1.25199 1.22174 0.95262 0.99039 0.89522 1.20639 0.93677 0.93002 0.98606 1.21777 1.00499 0.98249 0.98143 1.21600 0.98581 0.99451 0.97706 1.19121 0.94337 0.96335 0.90576 1.21235 1.12706 1.27042 0.93568 0.92293 1.25020 0.97763 0.96736 0.95092 1.69968 1.38752 1.45110 0.99907 0.86661 0.82842 0.80992 0.77902 1.20774 1.21391 1.19950 1.24373 0.87183 0.93015 1.01632 1.88864 1.43299 1.56914 1.40053 0.92996 0.92071 0.92936 0.91205 0.90902 0.90236 0.89992 0.83975 0.91423 0.95680 0.94883 0.91640 0.94063 0.94163 0.92660 0.93934 0.96680 0.96902 0.93153 0.92301 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.82 37.16 0.37 -0.89 16 2 C -0.12 -1.07 5.42 -26.73 -0.14 -1.22 16 3 C 0.07 0.75 3.41 -26.16 -0.09 0.66 16 4 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.14 -1.48 6.39 -25.20 -0.16 -1.64 16 6 C 0.06 0.70 3.41 -65.70 -0.22 0.48 16 7 H 0.09 1.18 7.91 -51.93 -0.41 0.77 16 8 N -0.67 -9.29 5.52 -104.61 -0.58 -9.87 16 9 C 0.07 1.14 4.51 -3.82 -0.02 1.13 16 10 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 11 C -0.13 -2.35 7.89 37.16 0.29 -2.05 16 12 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 13 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 14 C -0.51 -13.78 7.65 -34.44 -0.26 -14.04 16 15 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 18 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.02 0.20 7.28 38.21 0.28 0.48 16 23 O -0.37 -4.70 10.81 -35.23 -0.38 -5.08 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 30 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 31 H 0.34 4.50 6.35 -39.29 -0.25 4.25 16 32 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 35 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.13 6.61 -51.93 -0.34 0.78 16 39 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.06 0.68 7.82 -51.93 -0.41 0.27 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -28.94 339.20 -8.32 -37.26 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.22 Total: 0.19 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 0.03 Total: -18.08 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.16 Total: -35.92 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.38 Total: -5.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.94 -8.32 -37.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594952809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.977 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds