Wall clock time and date at job start Mon Mar 30 2020 07:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47551 * 2 1 4 4 H 1.09006 * 109.86668 * 54.54967 * 3 2 1 5 5 C 1.54095 * 109.88316 * 175.71362 * 3 2 1 6 6 C 1.54816 * 104.18734 * 121.45373 * 5 3 2 7 7 H 1.08998 * 110.93750 * 262.67371 * 6 5 3 8 8 N 1.46895 * 110.90438 * 139.08003 * 6 5 3 9 9 C 1.46906 * 110.99789 * 160.84080 * 8 6 5 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47454 * 300.00316 * 10 9 8 12 12 C 1.52997 * 109.46978 * 60.00394 * 10 9 8 13 13 C 1.52996 * 109.46891 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.46946 * 180.02562 * 13 10 9 15 15 H 1.07998 * 120.00275 * 0.02562 * 14 13 10 16 16 C 1.37885 * 119.99908 * 180.02562 * 14 13 10 17 17 N 1.31511 * 119.99697 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99899 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47418 * 89.99714 * 18 16 14 20 20 H 1.48498 * 109.47091 * 209.99774 * 18 16 14 21 21 H 1.48498 * 109.46997 * 329.99585 * 18 16 14 22 22 C 1.54997 * 102.09063 * 20.88106 * 6 5 3 23 23 O 1.43747 * 109.87750 * 293.55243 * 3 2 1 24 24 H 1.09001 * 109.46741 * 300.00141 * 1 2 3 25 25 H 1.08996 * 109.47116 * 60.00024 * 1 2 3 26 26 H 1.09000 * 109.47477 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47247 * 239.99766 * 2 1 3 28 28 H 1.09000 * 109.47162 * 120.00481 * 2 1 3 29 29 H 1.09005 * 110.48638 * 2.77933 * 5 3 2 30 30 H 1.08999 * 110.49126 * 240.12887 * 5 3 2 31 31 H 1.00902 * 111.00273 * 284.79602 * 8 6 5 32 32 H 1.08992 * 109.47459 * 299.99826 * 9 8 6 33 33 H 1.09004 * 109.47040 * 59.99976 * 9 8 6 34 34 H 1.09002 * 109.47067 * 59.99861 * 11 10 9 35 35 H 1.09000 * 109.47312 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.46930 * 299.99944 * 11 10 9 37 37 H 1.08998 * 109.47624 * 59.99457 * 12 10 9 38 38 H 1.09000 * 109.47140 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.47045 * 299.99833 * 12 10 9 40 40 H 1.09001 * 109.47372 * 300.00036 * 13 10 9 41 41 H 1.08996 * 109.47261 * 60.00575 * 13 10 9 42 42 H 0.97007 * 119.99539 * 180.02562 * 17 16 14 43 43 H 1.09007 * 110.61667 * 81.47943 * 22 6 5 44 44 H 1.08998 * 110.61987 * 204.47170 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6030 1.9899 0.8351 5 6 3.5772 1.4547 0.1083 6 6 4.0410 2.2088 -1.1617 7 1 4.3239 1.5094 -1.9484 8 7 5.1486 3.1231 -0.8533 9 6 5.8832 3.4899 -2.0714 10 6 7.0259 4.4413 -1.7108 11 6 6.4537 5.7027 -1.0610 12 6 7.9759 3.7492 -0.7314 13 6 7.7914 4.8228 -2.9794 14 6 8.9174 5.7593 -2.6242 15 1 9.0718 6.0528 -1.5964 16 6 9.7504 6.2417 -3.6114 17 7 9.5626 5.8839 -4.8630 18 14 11.1465 7.4020 -3.1710 19 1 12.3688 6.6141 -2.8702 20 1 11.4129 8.3120 -4.3138 21 1 10.7675 8.2023 -1.9789 22 6 2.7659 2.9973 -1.5550 23 8 1.6938 2.0833 -1.2392 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 3.9676 0.4370 0.1117 30 1 3.8922 1.9882 1.0051 31 1 4.8158 3.9444 -0.3706 32 1 6.2906 2.5913 -2.5345 33 1 5.2065 3.9834 -2.7691 34 1 5.9086 5.4306 -0.1572 35 1 7.2678 6.3803 -0.8038 36 1 5.7769 6.1959 -1.7589 37 1 8.3836 2.8505 -1.1942 38 1 8.7902 4.4267 -0.4748 39 1 7.4308 3.4770 0.1725 40 1 8.1992 3.9239 -3.4419 41 1 7.1149 5.3157 -3.6776 42 1 10.1489 6.2230 -5.5575 43 1 2.6803 3.9086 -0.9631 44 1 2.7713 3.2294 -2.6200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594952809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:16 Heat of formation + Delta-G solvation = -92.468382 kcal Electronic energy + Delta-G solvation = -19607.093582 eV Core-core repulsion = 16750.439408 eV Total energy + Delta-G solvation = -2856.654175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79241 -38.94442 -35.81854 -34.46849 -34.18234 -31.18010 -29.10703 -28.38244 -27.88201 -26.51856 -24.65773 -24.04537 -22.27426 -21.63088 -19.56580 -18.33138 -17.52392 -17.02389 -16.56706 -16.49214 -15.86233 -15.44567 -15.14932 -14.63774 -14.40264 -14.31621 -14.12707 -13.89369 -13.86138 -13.55633 -13.12038 -12.86087 -12.72100 -12.59744 -12.45148 -12.31922 -12.24977 -12.14662 -11.93156 -11.84672 -11.63898 -11.56716 -11.36777 -10.86381 -10.71497 -10.66664 -10.50354 -9.29666 -8.13933 -6.20831 1.41300 1.41593 1.52130 2.43765 2.76997 3.20205 3.38384 3.66806 3.74320 3.97322 4.05783 4.18105 4.23425 4.24736 4.34301 4.39100 4.48374 4.62966 4.67439 4.76680 4.81379 4.84234 4.92806 4.95336 5.06017 5.08791 5.11269 5.15709 5.22750 5.23297 5.28649 5.44688 5.52635 5.54911 5.59636 5.65273 5.87657 5.90273 5.93370 6.09231 6.36875 6.47511 6.94623 7.46589 8.98459 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.057204 B = 0.003542 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.355640 B = 7903.591094 C = 8026.092449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.071 3.929 4 H 0.074 0.926 5 C -0.134 4.134 6 C 0.057 3.943 7 H 0.083 0.917 8 N -0.665 5.665 9 C 0.081 3.919 10 C -0.056 4.056 11 C -0.123 4.123 12 C -0.107 4.107 13 C 0.039 3.961 14 C -0.513 4.513 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.262 1.262 22 C 0.018 3.982 23 O -0.390 6.390 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.347 0.653 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.029 0.971 38 H 0.038 0.962 39 H 0.069 0.931 40 H -0.017 1.017 41 H -0.016 1.016 42 H 0.259 0.741 43 H 0.067 0.933 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 -9.094 12.237 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C 0.013 3.987 4 H 0.092 0.908 5 C -0.172 4.172 6 C -0.054 4.054 7 H 0.101 0.899 8 N -0.298 5.298 9 C -0.048 4.048 10 C -0.056 4.056 11 C -0.180 4.180 12 C -0.164 4.164 13 C 0.002 3.998 14 C -0.552 4.552 15 H 0.085 0.915 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.186 1.186 22 C -0.060 4.060 23 O -0.309 6.309 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.168 0.832 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.834 -9.615 12.136 21.443 hybrid contribution 0.508 1.347 -1.031 1.771 sum -14.326 -8.268 11.105 19.923 Atomic orbital electron populations 1.21709 0.95285 1.01966 1.01660 1.21746 0.96808 0.94196 1.03121 1.22978 0.94317 0.94624 0.86770 0.90850 1.22933 0.93999 1.02047 0.98229 1.23139 0.89170 0.95128 0.97993 0.89922 1.60531 1.25341 1.20466 1.23438 1.21862 0.94535 0.97738 0.90650 1.20500 0.94325 0.94626 0.96141 1.21694 1.00027 0.96875 0.99414 1.21507 0.98110 0.98424 0.98399 1.19008 0.93946 0.94310 0.92540 1.21630 1.12928 1.26753 0.93844 0.91531 1.25926 1.00622 0.98630 0.94997 1.70112 1.40111 1.46725 1.01052 0.85579 0.79536 0.78853 0.77903 1.20161 1.21321 1.18598 1.24330 0.86966 0.93252 1.01478 1.88859 1.43576 1.57224 1.41247 0.92305 0.93764 0.91770 0.91975 0.88994 0.89474 0.89248 0.83205 0.92501 0.96143 0.91274 0.93462 0.94408 0.95179 0.94278 0.91209 0.99842 0.99773 0.93190 0.91495 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.82 71.98 0.71 -1.52 16 2 C -0.12 -1.87 5.42 30.59 0.17 -1.71 16 3 C 0.07 1.29 3.41 30.96 0.11 1.40 16 4 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 5 C -0.13 -2.44 6.39 31.58 0.20 -2.24 16 6 C 0.06 1.28 3.41 46.22 0.16 1.44 16 7 H 0.08 2.05 7.91 -2.39 -0.02 2.03 16 8 N -0.67 -16.98 5.52 -484.86 -2.68 -19.66 16 9 C 0.08 2.68 4.51 86.30 0.39 3.06 16 10 C -0.06 -2.15 0.60 -52.18 -0.03 -2.18 16 11 C -0.12 -4.27 7.89 71.98 0.57 -3.70 16 12 C -0.11 -3.96 8.06 71.98 0.58 -3.38 16 13 C 0.04 2.03 4.04 29.85 0.12 2.15 16 14 C -0.51 -28.25 7.65 25.60 0.20 -28.05 16 15 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 16 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 17 N -0.94 -57.46 13.29 21.45 0.28 -57.18 16 18 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 22 C 0.02 0.42 7.28 72.67 0.53 0.94 16 23 O -0.39 -9.31 10.81 -148.98 -1.61 -10.92 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.04 0.80 7.89 -2.39 -0.02 0.79 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.47 7.70 -2.38 -0.02 1.45 16 30 H 0.09 1.53 8.06 -2.39 -0.02 1.51 16 31 H 0.35 8.13 6.35 -89.69 -0.57 7.56 16 32 H 0.06 1.99 8.09 -2.39 -0.02 1.97 16 33 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.07 1.90 6.57 -2.39 -0.02 1.88 16 35 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 36 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.04 1.55 6.61 -2.39 -0.02 1.53 16 39 H 0.07 2.19 7.60 -2.39 -0.02 2.17 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 43 H 0.07 1.40 7.82 -2.38 -0.02 1.38 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -62.80 339.20 2.55 -60.25 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.37 Total: 14.74 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 4.15 Total: -33.60 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -2.39 Total: -76.84 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.61 Total: -10.92 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -62.80 2.55 -60.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594952809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.219 kcal (2) G-P(sol) polarization free energy of solvation -62.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds