Wall clock time and date at job start Mon Mar 30 2020 07:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46991 * 2 1 4 4 H 1.08997 * 109.87169 * 306.00340 * 3 2 1 5 5 C 1.54107 * 109.87908 * 184.99884 * 3 2 1 6 6 C 1.54809 * 104.18637 * 238.39423 * 5 3 2 7 7 H 1.08995 * 110.90667 * 97.35290 * 6 5 3 8 8 N 1.46905 * 110.90653 * 220.91944 * 6 5 3 9 9 C 1.46892 * 110.99935 * 205.00342 * 8 6 5 10 10 C 1.53006 * 109.47135 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.46974 * 59.99719 * 10 9 8 12 12 C 1.53002 * 109.46886 * 300.00131 * 10 9 8 13 13 C 1.53002 * 109.47348 * 179.97438 * 10 9 8 14 14 C 1.50696 * 109.46919 * 179.97438 * 13 10 9 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 10 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 13 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47035 * 60.00183 * 18 16 14 20 20 H 1.48503 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47237 * 299.99939 * 18 16 14 22 22 C 1.54994 * 102.09662 * 339.11806 * 6 5 3 23 23 O 1.43750 * 110.00856 * 67.09277 * 3 2 1 24 24 H 1.09001 * 109.47285 * 299.99943 * 1 2 3 25 25 H 1.08998 * 109.47295 * 60.00529 * 1 2 3 26 26 H 1.09001 * 109.47438 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47200 * 239.99402 * 2 1 3 28 28 H 1.09000 * 109.46836 * 119.99710 * 2 1 3 29 29 H 1.08999 * 110.48385 * 119.71754 * 5 3 2 30 30 H 1.08996 * 110.48588 * 357.07245 * 5 3 2 31 31 H 1.00903 * 110.99624 * 328.95804 * 8 6 5 32 32 H 1.09001 * 109.47511 * 60.00413 * 9 8 6 33 33 H 1.09000 * 109.47198 * 299.99775 * 9 8 6 34 34 H 1.09002 * 109.47045 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.47375 * 300.00376 * 11 10 9 36 36 H 1.09000 * 109.47140 * 60.00393 * 11 10 9 37 37 H 1.09004 * 109.47006 * 299.99766 * 12 10 9 38 38 H 1.09001 * 109.47142 * 59.99820 * 12 10 9 39 39 H 1.09002 * 109.46838 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.46497 * 60.00162 * 13 10 9 41 41 H 1.08999 * 109.46623 * 300.00226 * 13 10 9 42 42 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 43 43 H 1.08992 * 110.61805 * 155.52484 * 22 6 5 44 44 H 1.08999 * 110.61935 * 278.52486 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5953 1.9926 -0.8293 5 6 3.5758 1.4553 -0.1263 6 6 4.0542 2.2075 1.1393 7 1 4.3468 1.5066 1.9211 8 7 5.1580 3.1227 0.8194 9 6 5.9896 3.3784 2.0028 10 6 7.1255 4.3339 1.6312 11 6 6.5375 5.6530 1.1262 12 6 7.9829 3.7037 0.5318 13 6 7.9914 4.6008 2.8641 14 6 9.1104 5.5414 2.4978 15 1 9.1957 5.9114 1.4868 16 6 10.0259 5.9287 3.4533 17 7 9.9257 5.4730 4.6829 18 14 11.4134 7.0940 2.9991 19 1 10.8437 8.3745 2.5082 20 1 12.2538 7.3532 4.1957 21 1 12.2455 6.4812 1.9325 22 6 2.7837 2.9952 1.5488 23 8 1.7082 2.0814 1.2442 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8801 1.9901 -1.0259 30 1 3.9663 0.4377 -0.1358 31 1 5.7141 2.7657 0.0568 32 1 6.4082 2.4386 2.3629 33 1 5.3789 3.8278 2.7859 34 1 7.3467 6.3335 0.8611 35 1 5.9203 5.4632 0.2481 36 1 5.9267 6.1020 1.9094 37 1 8.4017 2.7638 0.8916 38 1 7.3657 3.5139 -0.3464 39 1 8.7923 4.3842 0.2674 40 1 8.4102 3.6611 3.2241 41 1 7.3802 5.0499 3.6469 42 1 9.2054 4.8676 4.9186 43 1 2.8016 3.2256 2.6139 44 1 2.6909 3.9073 0.9593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594952810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:19 Heat of formation + Delta-G solvation = -78.576155 kcal Electronic energy + Delta-G solvation = -19627.901174 eV Core-core repulsion = 16771.849411 eV Total energy + Delta-G solvation = -2856.051762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.82064 -37.58935 -34.58428 -33.69438 -32.43589 -30.09363 -27.81548 -26.53540 -26.40033 -25.10798 -23.62660 -22.44928 -21.18748 -20.88442 -18.23756 -16.55131 -16.30539 -16.03929 -15.67256 -15.16471 -14.37856 -14.09114 -13.72783 -13.65523 -13.52123 -13.34855 -13.23554 -12.66233 -12.19528 -12.05800 -11.75782 -11.57897 -11.51038 -11.17202 -11.13265 -10.97759 -10.89777 -10.81786 -10.75911 -10.56930 -10.11102 -10.01051 -9.83219 -9.73674 -9.29581 -8.41173 -8.28579 -8.26339 -6.30003 -3.97940 3.45363 3.47172 3.65550 3.72634 4.28706 4.41609 4.47815 4.58503 4.83511 4.91438 5.06812 5.13061 5.24803 5.41928 5.45127 5.52387 5.58542 5.60209 5.65584 5.69675 5.74183 5.79269 5.84971 5.90792 5.98222 6.07984 6.13021 6.20735 6.38411 6.54457 6.65822 6.73477 6.80281 7.08533 7.09886 7.16802 7.26713 7.40515 7.50476 7.59916 8.28834 8.52144 8.94395 9.72709 11.09905 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.057144 B = 0.003540 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.873724 B = 7907.404626 C = 8010.541289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.080 3.920 4 H 0.067 0.933 5 C -0.156 4.156 6 C 0.052 3.948 7 H 0.059 0.941 8 N -0.674 5.674 9 C 0.068 3.932 10 C -0.052 4.052 11 C -0.115 4.115 12 C -0.128 4.128 13 C 0.021 3.979 14 C -0.588 4.588 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 1.065 2.935 19 H -0.289 1.289 20 H -0.284 1.284 21 H -0.289 1.289 22 C 0.058 3.942 23 O -0.376 6.376 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.342 0.658 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.066 0.934 40 H 0.003 0.997 41 H 0.005 0.995 42 H 0.267 0.733 43 H 0.089 0.911 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.695 -9.223 -10.514 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C 0.022 3.978 4 H 0.085 0.915 5 C -0.194 4.194 6 C -0.059 4.059 7 H 0.077 0.923 8 N -0.308 5.308 9 C -0.061 4.061 10 C -0.052 4.052 11 C -0.173 4.173 12 C -0.186 4.186 13 C -0.017 4.017 14 C -0.626 4.626 15 H 0.071 0.929 16 C -0.191 4.191 17 N -0.554 5.554 18 Si 0.894 3.106 19 H -0.215 1.215 20 H -0.209 1.209 21 H -0.216 1.216 22 C -0.019 4.019 23 O -0.295 6.295 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.945 -7.913 -9.700 18.739 hybrid contribution -0.605 -1.640 -0.574 1.840 sum -14.550 -9.554 -10.274 20.212 Atomic orbital electron populations 1.21718 0.95352 1.01353 1.02280 1.21728 0.96785 0.95074 1.02447 1.22668 0.93611 0.93836 0.87656 0.91521 1.23192 0.95821 1.01328 0.99082 1.23078 0.93347 0.93097 0.96337 0.92335 1.60572 1.13298 1.47245 1.09660 1.22205 0.94335 0.98004 0.91523 1.20494 0.93070 0.94078 0.97578 1.21593 0.99628 0.96635 0.99402 1.21761 0.99636 1.00341 0.96818 1.19246 0.94360 0.96177 0.91894 1.22015 1.12601 1.29968 0.98047 0.92912 1.25791 1.00589 0.99090 0.93677 1.70776 1.33744 1.31733 1.19116 0.83593 0.75787 0.75762 0.75455 1.21511 1.20918 1.21572 1.23558 0.84352 0.92710 1.01308 1.88862 1.43782 1.57440 1.39398 0.91990 0.92912 0.92930 0.90996 0.91295 0.89821 0.90569 0.83745 0.95777 0.91570 0.92506 0.93799 0.94247 0.94212 0.94718 0.91500 0.97912 0.97628 0.92216 0.89320 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.83 37.16 0.37 -0.88 16 2 C -0.12 -1.07 5.42 -26.73 -0.15 -1.22 16 3 C 0.08 0.83 3.40 -26.16 -0.09 0.74 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.16 -1.57 6.15 -25.20 -0.15 -1.73 16 6 C 0.05 0.64 3.46 -65.70 -0.23 0.42 16 7 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 8 N -0.67 -9.38 5.58 -104.61 -0.58 -9.97 16 9 C 0.07 1.15 4.51 -3.82 -0.02 1.13 16 10 C -0.05 -1.02 0.60 -154.50 -0.09 -1.11 16 11 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 12 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 13 C 0.02 0.52 3.35 -27.88 -0.09 0.42 16 14 C -0.59 -16.19 7.65 -34.44 -0.26 -16.45 16 15 H 0.05 1.42 5.68 -52.49 -0.30 1.13 16 16 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 17 N -0.92 -28.15 13.65 55.43 0.76 -27.39 16 18 Si 1.07 25.32 29.90 -169.99 -5.08 20.23 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.06 0.73 7.41 38.21 0.28 1.02 16 23 O -0.38 -4.82 10.85 -35.23 -0.38 -5.20 16 24 H 0.06 0.59 7.91 -51.93 -0.41 0.18 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.81 7.93 -51.93 -0.41 0.39 16 30 H 0.08 0.69 7.70 -51.93 -0.40 0.29 16 31 H 0.34 4.53 6.38 -39.29 -0.25 4.28 16 32 H 0.02 0.41 8.08 -51.93 -0.42 0.00 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.19 6.62 -51.93 -0.34 0.84 16 35 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 39 H 0.07 1.36 6.62 -51.93 -0.34 1.01 16 40 H 0.00 0.07 8.00 -51.93 -0.42 -0.35 16 41 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 42 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 338.09 15.07 5.09 5.09 Total: -1.00 -29.68 338.09 -8.31 -37.99 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.17 Total: 0.66 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 0.06 Total: -21.42 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.17 Total: -37.36 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.38 Total: -5.20 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.68 -8.31 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594952810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.587 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds