Wall clock time and date at job start Mon Mar 30 2020 07:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46991 * 2 1 4 4 H 1.08997 * 109.87169 * 306.00340 * 3 2 1 5 5 C 1.54107 * 109.87908 * 184.99884 * 3 2 1 6 6 C 1.54809 * 104.18637 * 238.39423 * 5 3 2 7 7 H 1.08995 * 110.90667 * 97.35290 * 6 5 3 8 8 N 1.46905 * 110.90653 * 220.91944 * 6 5 3 9 9 C 1.46892 * 110.99935 * 205.00342 * 8 6 5 10 10 C 1.53006 * 109.47135 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.46974 * 59.99719 * 10 9 8 12 12 C 1.53002 * 109.46886 * 300.00131 * 10 9 8 13 13 C 1.53002 * 109.47348 * 179.97438 * 10 9 8 14 14 C 1.50696 * 109.46919 * 179.97438 * 13 10 9 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 10 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 13 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47035 * 60.00183 * 18 16 14 20 20 H 1.48503 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47237 * 299.99939 * 18 16 14 22 22 C 1.54994 * 102.09662 * 339.11806 * 6 5 3 23 23 O 1.43750 * 110.00856 * 67.09277 * 3 2 1 24 24 H 1.09001 * 109.47285 * 299.99943 * 1 2 3 25 25 H 1.08998 * 109.47295 * 60.00529 * 1 2 3 26 26 H 1.09001 * 109.47438 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47200 * 239.99402 * 2 1 3 28 28 H 1.09000 * 109.46836 * 119.99710 * 2 1 3 29 29 H 1.08999 * 110.48385 * 119.71754 * 5 3 2 30 30 H 1.08996 * 110.48588 * 357.07245 * 5 3 2 31 31 H 1.00903 * 110.99624 * 328.95804 * 8 6 5 32 32 H 1.09001 * 109.47511 * 60.00413 * 9 8 6 33 33 H 1.09000 * 109.47198 * 299.99775 * 9 8 6 34 34 H 1.09002 * 109.47045 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.47375 * 300.00376 * 11 10 9 36 36 H 1.09000 * 109.47140 * 60.00393 * 11 10 9 37 37 H 1.09004 * 109.47006 * 299.99766 * 12 10 9 38 38 H 1.09001 * 109.47142 * 59.99820 * 12 10 9 39 39 H 1.09002 * 109.46838 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.46497 * 60.00162 * 13 10 9 41 41 H 1.08999 * 109.46623 * 300.00226 * 13 10 9 42 42 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 43 43 H 1.08992 * 110.61805 * 155.52484 * 22 6 5 44 44 H 1.08999 * 110.61935 * 278.52486 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5953 1.9926 -0.8293 5 6 3.5758 1.4553 -0.1263 6 6 4.0542 2.2075 1.1393 7 1 4.3468 1.5066 1.9211 8 7 5.1580 3.1227 0.8194 9 6 5.9896 3.3784 2.0028 10 6 7.1255 4.3339 1.6312 11 6 6.5375 5.6530 1.1262 12 6 7.9829 3.7037 0.5318 13 6 7.9914 4.6008 2.8641 14 6 9.1104 5.5414 2.4978 15 1 9.1957 5.9114 1.4868 16 6 10.0259 5.9287 3.4533 17 7 9.9257 5.4730 4.6829 18 14 11.4134 7.0940 2.9991 19 1 10.8437 8.3745 2.5082 20 1 12.2538 7.3532 4.1957 21 1 12.2455 6.4812 1.9325 22 6 2.7837 2.9952 1.5488 23 8 1.7082 2.0814 1.2442 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8801 1.9901 -1.0259 30 1 3.9663 0.4377 -0.1358 31 1 5.7141 2.7657 0.0568 32 1 6.4082 2.4386 2.3629 33 1 5.3789 3.8278 2.7859 34 1 7.3467 6.3335 0.8611 35 1 5.9203 5.4632 0.2481 36 1 5.9267 6.1020 1.9094 37 1 8.4017 2.7638 0.8916 38 1 7.3657 3.5139 -0.3464 39 1 8.7923 4.3842 0.2674 40 1 8.4102 3.6611 3.2241 41 1 7.3802 5.0499 3.6469 42 1 9.2054 4.8676 4.9186 43 1 2.8016 3.2256 2.6139 44 1 2.6909 3.9073 0.9593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594952810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:18 Heat of formation + Delta-G solvation = -96.565343 kcal Electronic energy + Delta-G solvation = -19628.681244 eV Core-core repulsion = 16771.849411 eV Total energy + Delta-G solvation = -2856.831832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77210 -39.09719 -35.99335 -34.52815 -34.30140 -31.16272 -28.90014 -28.32170 -27.98375 -26.62323 -24.77642 -24.03932 -22.06320 -21.80529 -19.92909 -18.47144 -17.44564 -17.00951 -16.59687 -16.36497 -15.94623 -15.60286 -15.25316 -15.01431 -14.50873 -14.35165 -14.21700 -14.07989 -13.63438 -13.60382 -13.19293 -12.81897 -12.73510 -12.57135 -12.49117 -12.33133 -12.26855 -11.96044 -11.86923 -11.83013 -11.63982 -11.57938 -11.46583 -11.07119 -10.65315 -10.48997 -10.43629 -9.45228 -8.60183 -6.28316 1.53057 1.61447 1.79550 2.59445 2.78557 3.22802 3.24808 3.49752 3.71281 3.97616 4.03200 4.07836 4.19167 4.24717 4.27323 4.30720 4.46478 4.60482 4.64102 4.68013 4.75301 4.81679 4.86093 4.89779 4.91235 4.97357 5.04516 5.07989 5.09150 5.11339 5.25957 5.31665 5.37116 5.41978 5.48052 5.58743 5.70856 5.83712 6.04470 6.15710 6.27903 6.41666 6.67054 7.51706 8.79978 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.057144 B = 0.003540 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.873724 B = 7907.404626 C = 8010.541289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.075 3.925 4 H 0.074 0.926 5 C -0.147 4.147 6 C 0.051 3.949 7 H 0.051 0.949 8 N -0.666 5.666 9 C 0.082 3.918 10 C -0.050 4.050 11 C -0.106 4.106 12 C -0.122 4.122 13 C 0.023 3.977 14 C -0.590 4.590 15 H 0.059 0.941 16 C -0.046 4.046 17 N -0.947 5.947 18 Si 1.113 2.887 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.269 1.269 22 C 0.058 3.942 23 O -0.392 6.392 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.351 0.649 32 H 0.019 0.981 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.035 0.965 38 H 0.072 0.928 39 H 0.046 0.954 40 H -0.021 1.021 41 H -0.021 1.021 42 H 0.252 0.748 43 H 0.081 0.919 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.151 -9.675 -13.072 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.017 3.983 4 H 0.092 0.908 5 C -0.185 4.185 6 C -0.059 4.059 7 H 0.069 0.931 8 N -0.301 5.301 9 C -0.048 4.048 10 C -0.050 4.050 11 C -0.163 4.163 12 C -0.179 4.179 13 C -0.014 4.014 14 C -0.628 4.628 15 H 0.077 0.923 16 C -0.242 4.242 17 N -0.586 5.586 18 Si 0.935 3.065 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.194 1.194 22 C -0.019 4.019 23 O -0.312 6.312 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.172 0.828 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.065 0.935 40 H -0.003 1.003 41 H -0.003 1.003 42 H 0.062 0.938 43 H 0.100 0.900 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.426 -8.380 -12.287 20.720 hybrid contribution -0.544 -1.537 0.219 1.645 sum -14.970 -9.918 -12.068 21.636 Atomic orbital electron populations 1.21711 0.95207 1.02006 1.01727 1.21753 0.96935 0.94084 1.03093 1.22872 0.93926 0.94686 0.86828 0.90824 1.23167 0.95454 1.01872 0.98001 1.23069 0.92423 0.92816 0.97592 0.93067 1.60469 1.13000 1.48183 1.08401 1.21887 0.93537 0.96862 0.92493 1.20390 0.93507 0.95468 0.95631 1.21499 0.99098 0.95672 1.00080 1.21680 0.99297 0.99370 0.97541 1.19182 0.94344 0.94251 0.93623 1.22397 1.12725 1.29467 0.98162 0.92262 1.27324 1.03321 1.00339 0.93259 1.70916 1.34010 1.33106 1.20534 0.82989 0.73276 0.74700 0.75582 1.19509 1.21462 1.19368 1.23499 0.84670 0.92783 1.00957 1.88858 1.43949 1.57627 1.40731 0.93752 0.92239 0.91721 0.88889 0.92041 0.88735 0.89153 0.82826 0.96307 0.92616 0.94323 0.91009 0.95282 0.94566 0.90945 0.93484 1.00287 1.00314 0.93837 0.90022 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.83 71.98 0.71 -1.50 16 2 C -0.12 -1.83 5.42 30.59 0.17 -1.66 16 3 C 0.07 1.37 3.40 30.97 0.11 1.47 16 4 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 5 C -0.15 -2.53 6.15 31.59 0.19 -2.34 16 6 C 0.05 1.18 3.46 46.21 0.16 1.34 16 7 H 0.05 1.28 7.83 -2.39 -0.02 1.26 16 8 N -0.67 -17.08 5.58 -484.88 -2.70 -19.78 16 9 C 0.08 2.70 4.51 86.31 0.39 3.09 16 10 C -0.05 -1.93 0.60 -52.18 -0.03 -1.96 16 11 C -0.11 -3.98 8.06 71.98 0.58 -3.40 16 12 C -0.12 -4.27 7.89 71.98 0.57 -3.70 16 13 C 0.02 1.21 3.35 29.85 0.10 1.31 16 14 C -0.59 -32.80 7.65 25.60 0.20 -32.60 16 15 H 0.06 3.18 5.68 -2.91 -0.02 3.16 16 16 C -0.05 -2.69 5.46 84.66 0.46 -2.22 16 17 N -0.95 -59.74 13.65 21.45 0.29 -59.44 16 18 Si 1.11 50.65 29.90 68.60 2.05 52.70 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 C 0.06 1.42 7.41 72.66 0.54 1.96 16 23 O -0.39 -9.62 10.85 -148.98 -1.62 -11.23 16 24 H 0.04 0.80 7.91 -2.39 -0.02 0.78 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.46 7.93 -2.39 -0.02 1.44 16 30 H 0.09 1.33 7.70 -2.39 -0.02 1.31 16 31 H 0.35 8.07 6.38 -89.69 -0.57 7.49 16 32 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.57 6.62 -2.39 -0.02 1.55 16 35 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.07 1.99 6.57 -2.39 -0.02 1.97 16 39 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 40 H -0.02 -1.18 8.00 -2.39 -0.02 -1.20 16 41 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 42 H 0.25 16.18 7.22 -92.71 -0.67 15.51 16 43 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -64.93 338.09 2.63 -62.30 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.47 Total: 15.67 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 4.14 Total: -40.22 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -2.41 Total: -79.23 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.62 Total: -11.23 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.05 Total: 52.70 kcal Total: -64.93 2.63 -62.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594952810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.267 kcal (2) G-P(sol) polarization free energy of solvation -64.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds