Wall clock time and date at job start Mon Mar 30 2020 07:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47251 * 2 1 4 4 C 1.53005 * 109.46983 * 239.99847 * 2 1 3 5 5 O 1.42902 * 109.46959 * 120.00032 * 2 1 3 6 6 C 1.42904 * 113.99828 * 60.00013 * 5 2 1 7 7 C 1.53514 * 114.16878 * 209.99943 * 6 5 2 8 8 N 1.47470 * 87.93187 * 220.32857 * 7 6 5 9 9 C 1.46901 * 111.00419 * 138.70507 * 8 7 6 10 10 C 1.52992 * 109.47859 * 170.00112 * 9 8 7 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 C 1.47485 * 87.83976 * 27.01193 * 8 7 6 22 22 H 1.08997 * 109.47348 * 300.00399 * 1 2 3 23 23 H 1.09002 * 109.46585 * 59.99959 * 1 2 3 24 24 H 1.08997 * 109.47275 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47418 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47540 * 300.00324 * 3 2 1 27 27 H 1.09009 * 109.47417 * 59.99911 * 3 2 1 28 28 H 1.08999 * 109.46992 * 300.00293 * 4 2 1 29 29 H 1.08996 * 109.46921 * 60.00427 * 4 2 1 30 30 H 1.09001 * 109.46473 * 180.02562 * 4 2 1 31 31 H 1.09001 * 113.38199 * 343.07482 * 6 5 2 32 32 H 1.09001 * 113.47213 * 105.56311 * 7 6 5 33 33 H 1.08994 * 113.47633 * 335.09841 * 7 6 5 34 34 H 1.09002 * 109.46980 * 49.99771 * 9 8 7 35 35 H 1.09001 * 109.46628 * 290.00192 * 9 8 7 36 36 H 1.09002 * 109.47103 * 59.99734 * 10 9 8 37 37 H 1.08998 * 109.46862 * 300.00546 * 10 9 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 40 40 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 41 41 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 42 42 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 43 43 H 1.08995 * 113.47551 * 87.74830 * 21 8 7 44 44 H 1.08998 * 113.47679 * 218.22920 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0064 -0.6737 1.1668 6 6 1.5846 -2.0356 1.2645 7 6 1.4293 -2.5437 2.7047 8 7 2.0333 -3.8150 2.2647 9 6 2.9818 -4.3215 3.2655 10 6 3.3972 -5.7476 2.8989 11 6 4.3855 -6.2749 3.9410 12 6 4.8013 -7.7008 3.5739 13 6 5.7744 -8.2204 4.6008 14 1 6.0672 -7.5958 5.4318 15 6 6.2907 -9.4931 4.4793 16 7 5.9337 -10.2538 3.4677 17 14 7.4973 -10.1368 5.7518 18 1 6.8525 -10.1373 7.0896 19 1 7.8999 -11.5213 5.3963 20 1 8.6981 -9.2638 5.7814 21 6 2.7320 -3.0541 1.2120 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2492 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7217 -1.2490 31 1 0.7442 -2.2759 0.6133 32 1 0.3907 -2.6428 3.0205 33 1 2.0395 -1.9994 3.4254 34 1 2.5083 -4.3221 4.2473 35 1 3.8633 -3.6807 3.2877 36 1 3.8708 -5.7471 1.9171 37 1 2.5157 -6.3884 2.8766 38 1 3.9123 -6.2754 4.9230 39 1 5.2669 -5.6340 3.9627 40 1 3.9201 -8.3420 3.5519 41 1 5.2746 -7.7000 2.5921 42 1 6.2967 -11.1492 3.3824 43 1 3.6899 -2.6460 1.5344 44 1 2.7974 -3.5858 0.2627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:59 Heat of formation + Delta-G solvation = -37.186421 kcal Electronic energy + Delta-G solvation = -18911.607738 eV Core-core repulsion = 16057.350769 eV Total energy + Delta-G solvation = -2854.256969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.52506 -38.32795 -34.88009 -33.40655 -32.39480 -29.80167 -27.87296 -27.73553 -26.53556 -25.93684 -23.85886 -21.49097 -20.33057 -20.09165 -19.77304 -17.11064 -16.19181 -16.12431 -15.58327 -15.21750 -14.70489 -14.45649 -14.23712 -13.90645 -13.21264 -13.14694 -12.79970 -12.66050 -12.50821 -12.28246 -12.18751 -12.06684 -12.03686 -11.72181 -11.51321 -11.09146 -11.01755 -10.87478 -10.65850 -10.46198 -10.38427 -10.30067 -9.60769 -9.57737 -9.21881 -8.99477 -8.90738 -8.29317 -5.94480 -3.96730 3.32320 3.36332 3.40289 3.43054 4.08921 4.28595 4.49635 4.50931 4.58034 4.68160 4.79111 4.95084 5.12258 5.19340 5.23180 5.36683 5.39285 5.40835 5.43076 5.49966 5.53071 5.55999 5.58098 5.68639 5.73914 5.80135 5.93212 5.93661 5.96699 6.04775 6.28327 6.37838 6.61664 6.88161 7.00467 7.07173 7.09851 7.26380 7.74600 7.91192 8.06875 8.49594 9.10639 9.66817 11.16888 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.053390 B = 0.002766 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.316658 B =10121.994782 C =10173.130802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.104 3.896 3 C -0.138 4.138 4 C -0.177 4.177 5 O -0.363 6.363 6 C 0.057 3.943 7 C -0.003 4.003 8 N -0.468 5.468 9 C 0.024 3.976 10 C -0.107 4.107 11 C -0.110 4.110 12 C 0.022 3.978 13 C -0.520 4.520 14 H 0.053 0.947 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.017 4.017 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.260 0.740 43 H 0.077 0.923 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 22.525 -8.317 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.065 3.935 3 C -0.195 4.195 4 C -0.235 4.235 5 O -0.281 6.281 6 C -0.002 4.002 7 C -0.132 4.132 8 N -0.191 5.191 9 C -0.105 4.105 10 C -0.145 4.145 11 C -0.148 4.148 12 C -0.015 4.015 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.146 4.146 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.425 21.849 -8.401 26.048 hybrid contribution 1.149 -0.033 0.782 1.390 sum -10.276 21.816 -7.620 25.290 Atomic orbital electron populations 1.22466 0.95677 1.02654 1.02779 1.21532 0.93118 0.93143 0.85682 1.21759 1.02023 0.93348 1.02366 1.22473 1.02391 1.00999 0.97594 1.88031 1.73764 1.23502 1.42797 1.23773 0.97369 0.81279 0.97755 1.24120 1.01814 0.90869 0.96410 1.68873 1.22563 1.18972 1.08698 1.22796 0.94193 0.98119 0.95341 1.21530 0.99790 0.93384 0.99830 1.21612 0.96619 0.99691 0.96876 1.19081 0.96164 0.89659 0.96634 1.21262 1.25790 0.99135 1.09688 0.92835 1.25035 0.96797 0.97029 0.95676 1.69959 1.44377 1.09235 1.30034 0.86669 0.81591 0.77869 0.81925 1.20264 1.21301 1.20283 1.24482 0.97559 0.94171 0.98369 0.91698 0.91545 0.92004 0.91781 0.91211 0.91869 0.92016 0.91667 0.91627 0.88027 0.89498 0.90653 0.91084 0.93789 0.92672 0.91797 0.93517 0.93714 0.96621 0.96733 0.93002 0.90514 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.38 37.16 0.31 -0.94 16 2 C 0.10 0.86 1.11 -90.62 -0.10 0.76 16 3 C -0.14 -0.97 8.84 37.15 0.33 -0.64 16 4 C -0.18 -1.35 8.38 37.16 0.31 -1.04 16 5 O -0.36 -3.92 10.04 -35.23 -0.35 -4.28 16 6 C 0.06 0.60 3.16 -26.20 -0.08 0.52 16 7 C 0.00 -0.04 7.52 -7.55 -0.06 -0.09 16 8 N -0.47 -6.44 6.33 -244.66 -1.55 -7.99 16 9 C 0.02 0.36 4.82 -3.83 -0.02 0.34 16 10 C -0.11 -1.96 5.54 -26.74 -0.15 -2.11 16 11 C -0.11 -2.36 5.15 -26.73 -0.14 -2.50 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 17 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.02 -0.20 7.55 -7.54 -0.06 -0.26 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.44 6.28 -51.93 -0.33 0.12 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 28 H 0.06 0.49 6.98 -51.93 -0.36 0.13 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.98 5.56 -51.93 -0.29 0.69 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.88 7.91 -51.93 -0.41 0.47 16 34 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.04 0.65 7.30 -51.93 -0.38 0.27 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.08 0.98 7.42 -51.93 -0.39 0.60 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 348.23 15.07 5.25 5.25 Total: -1.00 -31.24 348.23 -9.59 -40.84 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -8.45 Total: -4.45 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -0.20 Total: -19.54 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.81 Total: -34.96 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.35 Total: -4.28 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.24 -9.59 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.651 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds