Wall clock time and date at job start Mon Mar 30 2020 07:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47251 * 2 1 4 4 C 1.53005 * 109.46983 * 239.99847 * 2 1 3 5 5 O 1.42902 * 109.46959 * 120.00032 * 2 1 3 6 6 C 1.42904 * 113.99828 * 60.00013 * 5 2 1 7 7 C 1.53514 * 114.16878 * 209.99943 * 6 5 2 8 8 N 1.47470 * 87.93187 * 220.32857 * 7 6 5 9 9 C 1.46901 * 111.00419 * 138.70507 * 8 7 6 10 10 C 1.52992 * 109.47859 * 170.00112 * 9 8 7 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 C 1.47485 * 87.83976 * 27.01193 * 8 7 6 22 22 H 1.08997 * 109.47348 * 300.00399 * 1 2 3 23 23 H 1.09002 * 109.46585 * 59.99959 * 1 2 3 24 24 H 1.08997 * 109.47275 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47418 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47540 * 300.00324 * 3 2 1 27 27 H 1.09009 * 109.47417 * 59.99911 * 3 2 1 28 28 H 1.08999 * 109.46992 * 300.00293 * 4 2 1 29 29 H 1.08996 * 109.46921 * 60.00427 * 4 2 1 30 30 H 1.09001 * 109.46473 * 180.02562 * 4 2 1 31 31 H 1.09001 * 113.38199 * 343.07482 * 6 5 2 32 32 H 1.09001 * 113.47213 * 105.56311 * 7 6 5 33 33 H 1.08994 * 113.47633 * 335.09841 * 7 6 5 34 34 H 1.09002 * 109.46980 * 49.99771 * 9 8 7 35 35 H 1.09001 * 109.46628 * 290.00192 * 9 8 7 36 36 H 1.09002 * 109.47103 * 59.99734 * 10 9 8 37 37 H 1.08998 * 109.46862 * 300.00546 * 10 9 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 40 40 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 41 41 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 42 42 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 43 43 H 1.08995 * 113.47551 * 87.74830 * 21 8 7 44 44 H 1.08998 * 113.47679 * 218.22920 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0064 -0.6737 1.1668 6 6 1.5846 -2.0356 1.2645 7 6 1.4293 -2.5437 2.7047 8 7 2.0333 -3.8150 2.2647 9 6 2.9818 -4.3215 3.2655 10 6 3.3972 -5.7476 2.8989 11 6 4.3855 -6.2749 3.9410 12 6 4.8013 -7.7008 3.5739 13 6 5.7744 -8.2204 4.6008 14 1 6.0672 -7.5958 5.4318 15 6 6.2907 -9.4931 4.4793 16 7 5.9337 -10.2538 3.4677 17 14 7.4973 -10.1368 5.7518 18 1 6.8525 -10.1373 7.0896 19 1 7.8999 -11.5213 5.3963 20 1 8.6981 -9.2638 5.7814 21 6 2.7320 -3.0541 1.2120 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2492 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7217 -1.2490 31 1 0.7442 -2.2759 0.6133 32 1 0.3907 -2.6428 3.0205 33 1 2.0395 -1.9994 3.4254 34 1 2.5083 -4.3221 4.2473 35 1 3.8633 -3.6807 3.2877 36 1 3.8708 -5.7471 1.9171 37 1 2.5157 -6.3884 2.8766 38 1 3.9123 -6.2754 4.9230 39 1 5.2669 -5.6340 3.9627 40 1 3.9201 -8.3420 3.5519 41 1 5.2746 -7.7000 2.5921 42 1 6.2967 -11.1492 3.3824 43 1 3.6899 -2.6460 1.5344 44 1 2.7974 -3.5858 0.2627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:59 Heat of formation + Delta-G solvation = -57.147361 kcal Electronic energy + Delta-G solvation = -18912.473309 eV Core-core repulsion = 16057.350769 eV Total energy + Delta-G solvation = -2855.122540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44252 -39.13047 -36.61862 -34.69224 -33.91593 -31.41278 -28.68814 -28.30981 -27.92699 -26.88592 -25.55171 -22.95872 -21.76839 -21.20369 -20.69476 -18.44577 -17.83642 -17.09836 -16.72176 -16.50988 -16.11151 -15.66294 -15.20897 -14.95972 -14.54361 -14.07881 -13.98032 -13.89690 -13.58360 -13.52453 -13.14721 -13.05080 -12.85155 -12.77346 -12.66625 -12.63175 -12.45761 -12.23365 -12.10219 -11.87230 -11.69438 -11.39973 -11.32953 -11.27859 -10.94931 -10.56055 -10.40372 -9.99883 -8.20531 -6.32541 1.38732 1.42589 1.50554 2.40232 2.54750 3.11386 3.11870 3.41485 3.88714 3.91593 3.92965 3.98577 4.06873 4.14518 4.16940 4.41698 4.50234 4.54634 4.62182 4.66195 4.67426 4.74944 4.76433 4.80796 4.83718 4.90803 4.96732 4.97494 4.99757 5.09557 5.19672 5.26111 5.32558 5.36815 5.38089 5.39690 5.53210 5.75867 5.85204 6.00147 6.24469 6.36512 6.84665 7.36764 8.91344 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.053390 B = 0.002766 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.316658 B =10121.994782 C =10173.130802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 C -0.137 4.137 4 C -0.176 4.176 5 O -0.378 6.378 6 C 0.072 3.928 7 C -0.002 4.002 8 N -0.482 5.482 9 C 0.034 3.966 10 C -0.097 4.097 11 C -0.097 4.097 12 C 0.024 3.976 13 C -0.547 4.547 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.021 4.021 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.049 0.951 40 H -0.011 1.011 41 H -0.012 1.012 42 H 0.264 0.736 43 H 0.070 0.930 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.416 23.898 -7.837 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.057 3.943 3 C -0.194 4.194 4 C -0.233 4.233 5 O -0.297 6.297 6 C 0.013 3.987 7 C -0.131 4.131 8 N -0.206 5.206 9 C -0.095 4.095 10 C -0.135 4.135 11 C -0.135 4.135 12 C -0.013 4.013 13 C -0.585 4.585 14 H 0.079 0.921 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.150 4.150 22 H 0.081 0.919 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.007 0.993 41 H 0.006 0.994 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.680 23.246 -7.923 27.195 hybrid contribution 1.204 -0.438 0.565 1.400 sum -10.476 22.808 -7.358 26.155 Atomic orbital electron populations 1.22442 0.94557 1.02755 1.03526 1.21789 0.94081 0.93500 0.84978 1.21786 1.01569 0.92758 1.03277 1.22463 1.01794 1.00911 0.98134 1.88013 1.74218 1.23369 1.44128 1.23612 0.96664 0.81137 0.97265 1.24159 1.02267 0.89609 0.97046 1.68814 1.22452 1.20509 1.08816 1.22599 0.94890 0.95905 0.96074 1.21348 0.98396 0.95410 0.98353 1.21415 0.97675 0.96362 0.98056 1.19008 0.94601 0.92641 0.95089 1.21717 1.26492 0.99857 1.10385 0.92132 1.26046 0.98794 0.97278 0.97969 1.70101 1.45681 1.09711 1.32042 0.85466 0.79017 0.77300 0.79055 1.19046 1.20711 1.19083 1.24529 0.97926 0.94692 0.97898 0.91898 0.89888 0.92195 0.92538 0.89206 0.92067 0.92506 0.89920 0.92564 0.86884 0.88203 0.90694 0.90356 0.93398 0.93466 0.92708 0.92880 0.93199 0.99259 0.99378 0.92724 0.91188 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 8.38 71.98 0.60 -1.48 16 2 C 0.10 1.41 1.11 -10.79 -0.01 1.40 16 3 C -0.14 -1.70 8.84 71.98 0.64 -1.06 16 4 C -0.18 -2.42 8.38 71.98 0.60 -1.81 16 5 O -0.38 -7.72 10.04 -148.98 -1.50 -9.22 16 6 C 0.07 1.43 3.16 30.94 0.10 1.53 16 7 C 0.00 -0.05 7.52 83.58 0.63 0.58 16 8 N -0.48 -12.83 6.33 -928.36 -5.88 -18.70 16 9 C 0.03 0.99 4.82 86.30 0.42 1.41 16 10 C -0.10 -3.56 5.54 30.59 0.17 -3.39 16 11 C -0.10 -4.19 5.15 30.59 0.16 -4.03 16 12 C 0.02 1.32 4.97 29.85 0.15 1.47 16 13 C -0.55 -32.36 9.11 25.60 0.23 -32.13 16 14 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 15 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 16 N -0.94 -58.76 13.29 21.45 0.28 -58.47 16 17 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 C -0.02 -0.51 7.55 83.58 0.63 0.12 16 22 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.73 6.28 -2.39 -0.01 0.72 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.83 6.98 -2.39 -0.02 0.81 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 1.99 5.56 -2.39 -0.01 1.98 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 1.63 7.91 -2.39 -0.02 1.61 16 34 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 35 H 0.05 1.37 7.30 -2.39 -0.02 1.35 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.07 1.77 7.42 -2.39 -0.02 1.75 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -66.97 348.23 0.63 -66.33 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.92 Total: 9.87 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 4.78 Total: -37.13 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -5.59 Total: -77.18 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -1.50 Total: -9.22 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -66.97 0.63 -66.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.187 kcal (2) G-P(sol) polarization free energy of solvation -66.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds