Wall clock time and date at job start Mon Mar 30 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47036 * 2 1 4 4 O 1.42902 * 109.46811 * 240.00577 * 2 1 3 5 5 C 1.52999 * 109.47459 * 120.00432 * 2 1 3 6 6 H 1.09004 * 110.72141 * 303.00578 * 5 2 1 7 7 C 1.54941 * 110.66676 * 66.09953 * 5 2 1 8 8 C 1.54592 * 102.91775 * 155.85162 * 7 5 2 9 9 C 1.53998 * 105.14339 * 338.04239 * 8 7 5 10 10 N 1.47903 * 107.05642 * 358.77690 * 9 8 7 11 11 C 1.46890 * 110.99930 * 145.84522 * 10 9 8 12 12 C 1.52998 * 109.47140 * 286.23258 * 11 10 9 13 13 C 1.53000 * 109.46969 * 173.99316 * 12 11 10 14 14 C 1.53007 * 109.47046 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46995 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99967 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99707 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00011 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99750 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47548 * 59.99815 * 19 17 15 21 21 H 1.48505 * 109.46968 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47210 * 299.99495 * 19 17 15 23 23 H 1.09004 * 109.46543 * 299.99410 * 1 2 3 24 24 H 1.08996 * 109.47426 * 59.99698 * 1 2 3 25 25 H 1.08996 * 109.46826 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46867 * 197.69318 * 3 2 1 27 27 H 1.08995 * 109.47003 * 317.69666 * 3 2 1 28 28 H 1.08997 * 109.46930 * 77.69311 * 3 2 1 29 29 H 0.96700 * 113.99823 * 180.02562 * 4 2 1 30 30 H 1.09004 * 110.71984 * 274.20500 * 7 5 2 31 31 H 1.08993 * 110.72570 * 37.49051 * 7 5 2 32 32 H 1.09004 * 110.30427 * 219.12392 * 8 7 5 33 33 H 1.08998 * 110.30961 * 96.95981 * 8 7 5 34 34 H 1.09005 * 109.91483 * 239.42346 * 9 8 7 35 35 H 1.08993 * 109.91572 * 118.13166 * 9 8 7 36 36 H 1.08998 * 109.47161 * 46.23684 * 11 10 9 37 37 H 1.09008 * 109.47238 * 166.23245 * 11 10 9 38 38 H 1.09003 * 109.47350 * 293.98670 * 12 11 10 39 39 H 1.08993 * 109.47314 * 53.99189 * 12 11 10 40 40 H 1.08998 * 109.47218 * 299.99575 * 13 12 11 41 41 H 1.09002 * 109.47349 * 60.00059 * 13 12 11 42 42 H 1.08998 * 109.46651 * 299.99782 * 14 13 12 43 43 H 1.09002 * 109.47113 * 59.99774 * 14 13 12 44 44 H 0.96998 * 119.99678 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7213 1.2492 6 1 1.6451 -0.2553 2.1519 7 6 1.6687 -2.2248 1.2024 8 6 2.7314 -2.8720 2.1198 9 6 3.9000 -1.8696 2.1512 10 7 3.5251 -0.7387 1.2749 11 6 4.0575 0.5283 1.7936 12 6 3.2492 0.9572 3.0198 13 6 3.8941 2.1939 3.6487 14 6 3.0861 2.6225 4.8753 15 6 3.7210 3.8411 5.4943 16 1 4.6118 4.2669 5.0569 17 6 3.1650 4.4115 6.6197 18 7 2.0805 3.8925 7.1526 19 14 3.9523 5.9215 7.3874 20 1 3.9716 7.0276 6.3967 21 1 3.1688 6.3368 8.5786 22 1 5.3429 5.6002 7.7978 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.0842 1.4587 -0.3123 27 1 1.4445 2.0384 -0.6916 28 1 1.9546 1.8580 1.0040 29 1 2.9703 -0.7121 -1.2328 30 1 0.6664 -2.3870 1.5991 31 1 1.7496 -2.6107 0.1863 32 1 3.0608 -3.8242 1.7039 33 1 2.3289 -3.0153 3.1225 34 1 4.8069 -2.3447 1.7769 35 1 4.0570 -1.5141 3.1695 36 1 5.1020 0.3952 2.0753 37 1 3.9840 1.2960 1.0232 38 1 2.2288 1.1934 2.7179 39 1 3.2343 0.1456 3.7472 40 1 4.9145 1.9578 3.9506 41 1 3.9090 3.0056 2.9212 42 1 2.0656 2.8584 4.5737 43 1 3.0716 1.8107 5.6026 44 1 1.6892 4.2941 7.9441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:44 Heat of formation + Delta-G solvation = -66.871395 kcal Electronic energy + Delta-G solvation = -20251.778941 eV Core-core repulsion = 17396.234735 eV Total energy + Delta-G solvation = -2855.544206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.20955 -36.78825 -34.91638 -32.97158 -32.28369 -31.15579 -28.14367 -27.75950 -27.22172 -24.66468 -22.86876 -21.21471 -20.76771 -20.33265 -19.26703 -16.65448 -16.36685 -16.14716 -15.43224 -14.88677 -14.56864 -14.46032 -13.92430 -13.64238 -13.06470 -12.95542 -12.63020 -12.45193 -12.21726 -12.18887 -11.96147 -11.69227 -11.51785 -11.43283 -11.23169 -11.07688 -10.95132 -10.80204 -10.58115 -10.56684 -10.21437 -10.14307 -9.78084 -9.63987 -9.41180 -9.10026 -8.35638 -8.18187 -6.00677 -4.03220 3.32163 3.36529 3.39037 3.97884 4.32133 4.44951 4.65183 4.66421 4.94277 5.07901 5.11763 5.17335 5.29770 5.35032 5.41742 5.45896 5.56107 5.62228 5.76887 5.80301 5.83277 5.84115 5.90125 5.92235 5.98624 6.03191 6.11096 6.16704 6.18471 6.27969 6.39893 6.51814 6.69681 6.88579 6.97433 7.08061 7.17299 7.66211 7.81100 7.83062 7.99330 8.42445 9.03922 9.60946 11.10600 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.004443 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.639411 B = 6300.727317 C = 6593.268239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.148 3.852 3 C -0.186 4.186 4 O -0.560 6.560 5 C 0.026 3.974 6 H 0.077 0.923 7 C -0.115 4.115 8 C -0.132 4.132 9 C 0.034 3.966 10 N -0.514 5.514 11 C 0.029 3.971 12 C -0.154 4.154 13 C -0.106 4.106 14 C 0.022 3.978 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.380 0.620 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.013 0.987 43 H 0.012 0.988 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 -11.571 -13.748 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.107 3.893 3 C -0.243 4.243 4 O -0.366 6.366 5 C -0.083 4.083 6 H 0.094 0.906 7 C -0.153 4.153 8 C -0.170 4.170 9 C -0.094 4.094 10 N -0.237 5.237 11 C -0.098 4.098 12 C -0.192 4.192 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.229 0.771 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.818 -11.680 -14.237 18.433 hybrid contribution 0.732 1.115 1.679 2.145 sum -0.086 -10.565 -12.557 16.411 Atomic orbital electron populations 1.21774 0.92879 1.02612 1.02474 1.20908 0.93832 0.90400 0.84137 1.22821 1.01739 0.96603 1.03152 1.86394 1.27355 1.79475 1.43400 1.23682 0.89130 0.96659 0.98783 0.90552 1.22443 0.98014 0.94128 1.00737 1.22390 0.95927 0.98680 0.99969 1.22833 0.98369 0.91970 0.96267 1.64809 1.07982 1.03553 1.47389 1.22728 0.98890 0.91481 0.96742 1.22320 1.00049 0.99736 0.97087 1.21557 0.99250 0.94653 0.98990 1.19084 0.95019 0.95939 0.91467 1.21241 1.11392 1.12230 1.11085 0.92806 1.25027 0.95009 0.97370 0.97036 1.69955 1.20690 1.40826 1.22130 0.86671 0.79357 0.83335 0.78714 1.20223 1.21271 1.20256 0.91133 0.91892 0.91951 0.91325 0.92489 0.90894 0.77145 0.91521 0.90018 0.91366 0.91705 0.90709 0.93068 0.91196 0.89574 0.91833 0.92639 0.93551 0.93407 0.96843 0.96923 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.61 37.16 0.32 -1.22 16 2 C 0.15 1.74 0.92 -90.62 -0.08 1.66 16 3 C -0.19 -2.24 7.30 37.16 0.27 -1.97 16 4 O -0.56 -6.76 11.92 -35.23 -0.42 -7.18 16 5 C 0.03 0.32 1.48 -65.79 -0.10 0.22 16 6 H 0.08 1.06 5.33 -51.93 -0.28 0.78 16 7 C -0.12 -1.27 5.61 -24.87 -0.14 -1.41 16 8 C -0.13 -1.39 6.93 -25.37 -0.18 -1.56 16 9 C 0.03 0.39 6.41 -2.75 -0.02 0.38 16 10 N -0.51 -6.27 4.68 -222.63 -1.04 -7.31 16 11 C 0.03 0.40 4.63 -3.83 -0.02 0.38 16 12 C -0.15 -2.52 3.70 -26.73 -0.10 -2.62 16 13 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.65 7.41 -51.93 -0.38 0.27 16 26 H 0.07 0.80 6.20 -51.93 -0.32 0.48 16 27 H 0.06 0.66 8.01 -51.93 -0.42 0.24 16 28 H 0.07 0.97 5.58 -51.93 -0.29 0.68 16 29 H 0.38 4.04 8.52 45.56 0.39 4.43 16 30 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.08 0.93 7.18 -51.93 -0.37 0.56 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.66 6.41 -51.93 -0.33 0.33 16 36 H 0.07 0.95 8.03 -51.93 -0.42 0.54 16 37 H 0.09 1.13 4.84 -51.92 -0.25 0.88 16 38 H 0.06 1.06 4.74 -51.93 -0.25 0.81 16 39 H 0.05 0.95 6.68 -51.93 -0.35 0.61 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 327.33 15.07 4.93 4.93 Total: -1.00 -29.90 327.33 -8.57 -38.47 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.03 Total: 2.43 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -0.73 Total: -21.67 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: -0.30 Total: -33.74 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.42 Total: -7.18 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.90 -8.57 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.401 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds