Wall clock time and date at job start Mon Mar 30 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47036 * 2 1 4 4 O 1.42902 * 109.46811 * 240.00577 * 2 1 3 5 5 C 1.52999 * 109.47459 * 120.00432 * 2 1 3 6 6 H 1.09004 * 110.72141 * 303.00578 * 5 2 1 7 7 C 1.54941 * 110.66676 * 66.09953 * 5 2 1 8 8 C 1.54592 * 102.91775 * 155.85162 * 7 5 2 9 9 C 1.53998 * 105.14339 * 338.04239 * 8 7 5 10 10 N 1.47903 * 107.05642 * 358.77690 * 9 8 7 11 11 C 1.46890 * 110.99930 * 145.84522 * 10 9 8 12 12 C 1.52998 * 109.47140 * 286.23258 * 11 10 9 13 13 C 1.53000 * 109.46969 * 173.99316 * 12 11 10 14 14 C 1.53007 * 109.47046 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46995 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99967 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99707 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00011 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99750 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47548 * 59.99815 * 19 17 15 21 21 H 1.48505 * 109.46968 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47210 * 299.99495 * 19 17 15 23 23 H 1.09004 * 109.46543 * 299.99410 * 1 2 3 24 24 H 1.08996 * 109.47426 * 59.99698 * 1 2 3 25 25 H 1.08996 * 109.46826 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46867 * 197.69318 * 3 2 1 27 27 H 1.08995 * 109.47003 * 317.69666 * 3 2 1 28 28 H 1.08997 * 109.46930 * 77.69311 * 3 2 1 29 29 H 0.96700 * 113.99823 * 180.02562 * 4 2 1 30 30 H 1.09004 * 110.71984 * 274.20500 * 7 5 2 31 31 H 1.08993 * 110.72570 * 37.49051 * 7 5 2 32 32 H 1.09004 * 110.30427 * 219.12392 * 8 7 5 33 33 H 1.08998 * 110.30961 * 96.95981 * 8 7 5 34 34 H 1.09005 * 109.91483 * 239.42346 * 9 8 7 35 35 H 1.08993 * 109.91572 * 118.13166 * 9 8 7 36 36 H 1.08998 * 109.47161 * 46.23684 * 11 10 9 37 37 H 1.09008 * 109.47238 * 166.23245 * 11 10 9 38 38 H 1.09003 * 109.47350 * 293.98670 * 12 11 10 39 39 H 1.08993 * 109.47314 * 53.99189 * 12 11 10 40 40 H 1.08998 * 109.47218 * 299.99575 * 13 12 11 41 41 H 1.09002 * 109.47349 * 60.00059 * 13 12 11 42 42 H 1.08998 * 109.46651 * 299.99782 * 14 13 12 43 43 H 1.09002 * 109.47113 * 59.99774 * 14 13 12 44 44 H 0.96998 * 119.99678 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7213 1.2492 6 1 1.6451 -0.2553 2.1519 7 6 1.6687 -2.2248 1.2024 8 6 2.7314 -2.8720 2.1198 9 6 3.9000 -1.8696 2.1512 10 7 3.5251 -0.7387 1.2749 11 6 4.0575 0.5283 1.7936 12 6 3.2492 0.9572 3.0198 13 6 3.8941 2.1939 3.6487 14 6 3.0861 2.6225 4.8753 15 6 3.7210 3.8411 5.4943 16 1 4.6118 4.2669 5.0569 17 6 3.1650 4.4115 6.6197 18 7 2.0805 3.8925 7.1526 19 14 3.9523 5.9215 7.3874 20 1 3.9716 7.0276 6.3967 21 1 3.1688 6.3368 8.5786 22 1 5.3429 5.6002 7.7978 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.0842 1.4587 -0.3123 27 1 1.4445 2.0384 -0.6916 28 1 1.9546 1.8580 1.0040 29 1 2.9703 -0.7121 -1.2328 30 1 0.6664 -2.3870 1.5991 31 1 1.7496 -2.6107 0.1863 32 1 3.0608 -3.8242 1.7039 33 1 2.3289 -3.0153 3.1225 34 1 4.8069 -2.3447 1.7769 35 1 4.0570 -1.5141 3.1695 36 1 5.1020 0.3952 2.0753 37 1 3.9840 1.2960 1.0232 38 1 2.2288 1.1934 2.7179 39 1 3.2343 0.1456 3.7472 40 1 4.9145 1.9578 3.9506 41 1 3.9090 3.0056 2.9212 42 1 2.0656 2.8584 4.5737 43 1 3.0716 1.8107 5.6026 44 1 1.6892 4.2941 7.9441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:43 Heat of formation + Delta-G solvation = -86.598236 kcal Electronic energy + Delta-G solvation = -20252.634361 eV Core-core repulsion = 17396.234735 eV Total energy + Delta-G solvation = -2856.399626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21088 -37.79602 -36.48668 -34.75547 -33.23676 -32.70612 -29.42165 -29.07054 -28.16211 -26.30558 -24.28116 -22.41484 -22.01911 -21.62856 -20.34029 -18.47321 -17.52075 -17.37322 -16.67154 -16.44521 -15.93867 -15.68467 -14.99272 -14.71719 -14.46203 -14.32268 -13.96412 -13.74838 -13.47098 -13.25371 -13.20252 -13.07051 -12.84749 -12.64700 -12.58264 -12.41287 -12.18948 -12.10509 -12.04294 -11.89193 -11.61547 -11.42371 -11.22178 -11.14306 -11.07018 -10.68692 -10.57559 -9.29383 -8.22122 -6.34036 1.38054 1.41157 1.49182 2.39036 2.97743 3.10594 3.40944 3.71323 3.71811 3.98240 4.06493 4.10456 4.14534 4.23042 4.25549 4.42121 4.51929 4.55849 4.66670 4.70104 4.77787 4.88343 4.90549 4.97272 4.98265 4.99887 5.03436 5.08828 5.15089 5.17966 5.21819 5.25835 5.32102 5.41035 5.44949 5.53846 5.72295 5.83370 5.96337 6.07004 6.22955 6.83163 6.96395 7.35674 8.89353 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.004443 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.639411 B = 6300.727317 C = 6593.268239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.151 3.849 3 C -0.184 4.184 4 O -0.563 6.563 5 C 0.025 3.975 6 H 0.057 0.943 7 C -0.111 4.111 8 C -0.128 4.128 9 C 0.029 3.971 10 N -0.505 5.505 11 C 0.039 3.961 12 C -0.140 4.140 13 C -0.094 4.094 14 C 0.025 3.975 15 C -0.546 4.546 16 H 0.060 0.940 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.267 1.267 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.386 0.614 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.053 0.947 42 H -0.012 1.012 43 H -0.016 1.016 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -11.612 -14.754 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.110 3.890 3 C -0.241 4.241 4 O -0.371 6.371 5 C -0.084 4.084 6 H 0.075 0.925 7 C -0.149 4.149 8 C -0.166 4.166 9 C -0.099 4.099 10 N -0.228 5.228 11 C -0.089 4.089 12 C -0.178 4.178 13 C -0.132 4.132 14 C -0.012 4.012 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.789 3.211 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.191 1.191 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.236 0.764 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.006 0.994 43 H 0.003 0.997 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.149 -11.732 -15.259 19.248 hybrid contribution 0.403 1.095 1.998 2.314 sum 0.552 -10.637 -13.261 17.009 Atomic orbital electron populations 1.21794 0.92427 1.03047 1.02618 1.20873 0.94222 0.90049 0.83875 1.22786 1.02204 0.96857 1.02228 1.86390 1.28040 1.79409 1.43267 1.23670 0.88960 0.97554 0.98172 0.92548 1.22423 0.98489 0.93059 1.00935 1.22389 0.95247 0.99078 0.99923 1.22923 0.99525 0.92061 0.95353 1.64865 1.08010 1.02963 1.46938 1.22612 0.98459 0.92418 0.95374 1.22166 1.00134 0.97549 0.97970 1.21365 0.98554 0.96476 0.96799 1.19004 0.94519 0.94551 0.93119 1.21707 1.11810 1.13158 1.11683 0.92176 1.26004 0.95463 1.00806 0.97583 1.70095 1.22181 1.42541 1.22667 0.85507 0.78601 0.79147 0.77849 1.19044 1.20781 1.19146 0.91288 0.91487 0.91395 0.90823 0.92045 0.92508 0.76419 0.90991 0.89857 0.89630 0.91944 0.89344 0.94629 0.90795 0.88759 0.92198 0.93711 0.93280 0.92811 0.99383 0.99740 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.61 71.98 0.62 -2.34 16 2 C 0.15 3.37 0.92 -10.79 -0.01 3.36 16 3 C -0.18 -4.24 7.30 71.98 0.53 -3.71 16 4 O -0.56 -12.53 11.92 -148.98 -1.78 -14.31 16 5 C 0.03 0.59 1.48 45.26 0.07 0.65 16 6 H 0.06 1.57 5.33 -2.39 -0.01 1.56 16 7 C -0.11 -2.27 5.61 31.80 0.18 -2.09 16 8 C -0.13 -2.50 6.93 31.47 0.22 -2.28 16 9 C 0.03 0.64 6.41 86.45 0.55 1.20 16 10 N -0.51 -11.62 4.68 -858.27 -4.01 -15.63 16 11 C 0.04 1.02 4.63 86.30 0.40 1.42 16 12 C -0.14 -4.62 3.70 30.59 0.11 -4.50 16 13 C -0.09 -3.82 5.15 30.60 0.16 -3.67 16 14 C 0.03 1.35 4.97 29.85 0.15 1.50 16 15 C -0.55 -31.53 9.11 25.60 0.23 -31.30 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 18 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 19 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.33 7.41 -2.39 -0.02 1.31 16 26 H 0.07 1.60 6.20 -2.39 -0.01 1.59 16 27 H 0.06 1.34 8.01 -2.39 -0.02 1.33 16 28 H 0.06 1.50 5.58 -2.39 -0.01 1.48 16 29 H 0.39 7.39 8.52 -74.06 -0.63 6.76 16 30 H 0.07 1.40 8.05 -2.38 -0.02 1.38 16 31 H 0.08 1.71 7.18 -2.39 -0.02 1.69 16 32 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.04 0.90 6.41 -2.39 -0.02 0.89 16 36 H 0.07 1.89 8.03 -2.39 -0.02 1.87 16 37 H 0.09 2.33 4.84 -2.38 -0.01 2.32 16 38 H 0.06 2.04 4.74 -2.39 -0.01 2.02 16 39 H 0.04 1.57 6.68 -2.39 -0.02 1.55 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 42 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -63.82 327.33 0.52 -63.30 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.33 Total: 18.82 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 3.67 Total: -41.36 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -3.73 Total: -73.01 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.78 Total: -14.31 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.82 0.52 -63.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.300 kcal (2) G-P(sol) polarization free energy of solvation -63.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds