Wall clock time and date at job start Mon Mar 30 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53012 * 109.46905 * 2 1 4 4 O 1.42901 * 109.47228 * 240.00225 * 2 1 3 5 5 C 1.52995 * 109.47426 * 119.99746 * 2 1 3 6 6 H 1.09004 * 110.72669 * 299.06645 * 5 2 1 7 7 C 1.54933 * 110.67223 * 175.96547 * 5 2 1 8 8 C 1.54590 * 102.92355 * 204.15385 * 7 5 2 9 9 C 1.53990 * 105.14186 * 21.95702 * 8 7 5 10 10 N 1.47904 * 107.05718 * 1.22070 * 9 8 7 11 11 C 1.46897 * 111.00314 * 214.15565 * 10 9 8 12 12 C 1.53004 * 109.46990 * 72.24778 * 11 10 9 13 13 C 1.52995 * 109.47162 * 185.89302 * 12 11 10 14 14 C 1.53005 * 109.47100 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47313 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99712 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00446 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99524 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00438 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47046 * 59.99799 * 19 17 15 21 21 H 1.48497 * 109.47282 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46817 * 300.00102 * 19 17 15 23 23 H 1.09000 * 109.46919 * 282.87512 * 1 2 3 24 24 H 1.08996 * 109.47279 * 42.87571 * 1 2 3 25 25 H 1.08999 * 109.46832 * 162.87804 * 1 2 3 26 26 H 1.08994 * 109.46784 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46749 * 300.00048 * 3 2 1 28 28 H 1.09002 * 109.47036 * 59.99833 * 3 2 1 29 29 H 0.96701 * 113.99337 * 299.99712 * 4 2 1 30 30 H 1.08999 * 110.72530 * 85.79342 * 7 5 2 31 31 H 1.09007 * 110.87119 * 322.58343 * 7 5 2 32 32 H 1.08999 * 110.31110 * 263.03722 * 8 7 5 33 33 H 1.09009 * 110.39351 * 140.91611 * 8 7 5 34 34 H 1.09001 * 109.91466 * 241.87553 * 9 8 7 35 35 H 1.08999 * 109.92220 * 120.57801 * 9 8 7 36 36 H 1.09003 * 109.47426 * 312.25451 * 11 10 9 37 37 H 1.08994 * 109.47443 * 192.25155 * 11 10 9 38 38 H 1.09001 * 109.46960 * 65.88877 * 12 11 10 39 39 H 1.09004 * 109.47154 * 305.89448 * 12 11 10 40 40 H 1.08997 * 109.47101 * 60.00181 * 13 12 11 41 41 H 1.09004 * 109.47205 * 300.00114 * 13 12 11 42 42 H 1.09004 * 109.46870 * 299.99934 * 14 13 12 43 43 H 1.09001 * 109.47307 * 59.99400 * 14 13 12 44 44 H 0.97003 * 120.00161 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.7017 -0.2138 2.1527 7 6 3.5857 -0.8263 1.2273 8 6 3.8621 -2.0470 2.1346 9 6 2.5505 -2.8538 2.1340 10 7 1.6028 -2.1406 1.2503 11 6 0.2252 -2.2669 1.7444 12 6 0.0536 -1.4106 3.0007 13 6 -1.3332 -1.6549 3.5989 14 6 -1.5051 -0.7982 4.8548 15 6 -2.8713 -1.0383 5.4437 16 1 -3.5491 -1.7329 4.9697 17 6 -3.2557 -0.3721 6.5880 18 7 -2.4298 0.4725 7.1659 19 14 -4.9490 -0.6703 7.3183 20 1 -5.0888 -2.1052 7.6744 21 1 -5.1153 0.1604 8.5379 22 1 -5.9886 -0.3036 6.3233 23 1 -0.3633 0.2290 1.0018 24 1 -0.3633 0.7531 -0.6992 25 1 -0.3633 -0.9821 -0.3026 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9565 0.8900 29 1 1.7210 -1.5952 -1.2328 30 1 4.0394 0.0736 1.6426 31 1 3.9483 -1.0077 0.2154 32 1 4.1046 -1.7198 3.1456 33 1 4.6756 -2.6471 1.7266 34 1 2.1469 -2.9070 3.1451 35 1 2.7321 -3.8578 1.7505 36 1 0.0196 -3.3100 1.9849 37 1 -0.4690 -1.9276 0.9758 38 1 0.1563 -0.3574 2.7394 39 1 0.8168 -1.6798 3.7310 40 1 -1.4358 -2.7081 3.8602 41 1 -2.0965 -1.3858 2.8686 42 1 -0.7419 -1.0670 5.5852 43 1 -1.4026 0.2550 4.5932 44 1 -2.7002 0.9415 7.9708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:46 Heat of formation + Delta-G solvation = -67.183575 kcal Electronic energy + Delta-G solvation = -20241.893442 eV Core-core repulsion = 17386.335699 eV Total energy + Delta-G solvation = -2855.557743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19893 -36.79138 -34.90646 -32.96243 -32.29716 -31.15657 -28.14013 -27.75569 -27.23030 -24.66804 -22.86871 -21.23044 -20.74368 -20.33572 -19.28121 -16.65122 -16.37460 -16.14294 -15.41221 -14.89320 -14.58826 -14.46091 -13.91684 -13.63259 -13.05888 -12.96985 -12.62655 -12.46003 -12.21705 -12.20092 -11.96542 -11.70672 -11.51953 -11.43512 -11.23255 -11.08006 -10.95151 -10.81085 -10.57378 -10.56698 -10.22183 -10.13895 -9.77826 -9.63626 -9.41251 -9.10126 -8.35616 -8.18227 -6.00665 -4.03209 3.32158 3.36529 3.39034 3.97410 4.32433 4.44960 4.65055 4.66287 4.93872 5.07261 5.11527 5.17336 5.29040 5.35004 5.42094 5.45649 5.56017 5.61607 5.76705 5.79638 5.82816 5.83974 5.90319 5.91741 5.98680 6.03037 6.10718 6.16186 6.18031 6.27876 6.40157 6.51794 6.69754 6.88548 6.97297 7.08032 7.17249 7.66201 7.81119 7.83593 7.99319 8.42486 9.03920 9.60936 11.10602 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.004430 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.990400 B = 6319.578857 C = 6612.572651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.148 3.852 3 C -0.140 4.140 4 O -0.559 6.559 5 C 0.027 3.973 6 H 0.076 0.924 7 C -0.115 4.115 8 C -0.131 4.131 9 C 0.033 3.967 10 N -0.514 5.514 11 C 0.029 3.971 12 C -0.154 4.154 13 C -0.106 4.106 14 C 0.022 3.978 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.380 0.620 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.012 0.988 43 H 0.013 0.987 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.264 -2.807 -13.744 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.107 3.893 3 C -0.197 4.197 4 O -0.366 6.366 5 C -0.082 4.082 6 H 0.094 0.906 7 C -0.153 4.153 8 C -0.170 4.170 9 C -0.095 4.095 10 N -0.237 5.237 11 C -0.099 4.099 12 C -0.192 4.192 13 C -0.144 4.144 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.229 0.771 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.554 -2.346 -14.231 18.481 hybrid contribution -1.328 -0.368 1.665 2.161 sum 10.227 -2.714 -12.566 16.427 Atomic orbital electron populations 1.22809 0.95896 1.02519 1.03083 1.20911 0.92397 0.91817 0.84177 1.21776 1.01791 0.93714 1.02449 1.86391 1.77411 1.29455 1.43345 1.23668 0.95289 0.90501 0.98737 0.90604 1.22436 0.94656 0.97461 1.00734 1.22387 0.97502 0.97062 1.00010 1.22835 0.92207 0.98189 0.96228 1.64802 1.02448 1.08719 1.47758 1.22729 0.89831 1.00546 0.96758 1.22315 0.99931 0.99985 0.96971 1.21553 0.93363 1.00351 0.99167 1.19082 0.96595 0.94591 0.91239 1.21241 1.00392 1.24580 1.09732 0.92809 1.25028 0.97227 0.95207 0.96984 1.69956 1.35717 1.27690 1.20239 0.86668 0.84672 0.78197 0.78536 1.20256 1.21269 1.20223 0.91005 0.92448 0.91289 0.91929 0.91902 0.91158 0.77113 0.91533 0.90068 0.91710 0.91367 0.93007 0.90707 0.91154 0.89578 0.91898 0.92611 0.93544 0.93420 0.96927 0.96848 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 7.34 37.16 0.27 -1.96 16 2 C 0.15 1.74 0.92 -90.62 -0.08 1.65 16 3 C -0.14 -1.52 8.59 37.16 0.32 -1.20 16 4 O -0.56 -6.77 12.02 -35.23 -0.42 -7.20 16 5 C 0.03 0.32 1.49 -65.79 -0.10 0.22 16 6 H 0.08 1.05 5.35 -51.93 -0.28 0.77 16 7 C -0.11 -1.26 5.51 -24.88 -0.14 -1.40 16 8 C -0.13 -1.39 6.93 -25.38 -0.18 -1.57 16 9 C 0.03 0.39 6.42 -2.75 -0.02 0.37 16 10 N -0.51 -6.27 4.62 -222.63 -1.03 -7.30 16 11 C 0.03 0.39 4.67 -3.82 -0.02 0.37 16 12 C -0.15 -2.52 3.82 -26.73 -0.10 -2.63 16 13 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 16 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.07 0.95 5.87 -51.93 -0.30 0.65 16 24 H 0.06 0.66 8.02 -51.93 -0.42 0.24 16 25 H 0.07 0.80 6.07 -51.93 -0.32 0.49 16 26 H 0.06 0.65 7.33 -51.93 -0.38 0.27 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.38 4.08 8.46 45.56 0.39 4.46 16 30 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 31 H 0.08 0.92 7.27 -51.92 -0.38 0.55 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.05 0.67 6.30 -51.93 -0.33 0.35 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 37 H 0.09 1.13 4.81 -51.93 -0.25 0.88 16 38 H 0.06 1.05 4.77 -51.93 -0.25 0.80 16 39 H 0.06 0.96 6.57 -51.93 -0.34 0.62 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -29.92 327.38 -8.56 -38.48 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.03 Total: 2.41 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -0.73 Total: -21.65 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: -0.29 Total: -33.73 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.42 Total: -7.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.92 -8.56 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.705 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds