Wall clock time and date at job start Mon Mar 30 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53012 * 109.46905 * 2 1 4 4 O 1.42901 * 109.47228 * 240.00225 * 2 1 3 5 5 C 1.52995 * 109.47426 * 119.99746 * 2 1 3 6 6 H 1.09004 * 110.72669 * 299.06645 * 5 2 1 7 7 C 1.54933 * 110.67223 * 175.96547 * 5 2 1 8 8 C 1.54590 * 102.92355 * 204.15385 * 7 5 2 9 9 C 1.53990 * 105.14186 * 21.95702 * 8 7 5 10 10 N 1.47904 * 107.05718 * 1.22070 * 9 8 7 11 11 C 1.46897 * 111.00314 * 214.15565 * 10 9 8 12 12 C 1.53004 * 109.46990 * 72.24778 * 11 10 9 13 13 C 1.52995 * 109.47162 * 185.89302 * 12 11 10 14 14 C 1.53005 * 109.47100 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47313 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99712 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00446 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99524 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00438 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47046 * 59.99799 * 19 17 15 21 21 H 1.48497 * 109.47282 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46817 * 300.00102 * 19 17 15 23 23 H 1.09000 * 109.46919 * 282.87512 * 1 2 3 24 24 H 1.08996 * 109.47279 * 42.87571 * 1 2 3 25 25 H 1.08999 * 109.46832 * 162.87804 * 1 2 3 26 26 H 1.08994 * 109.46784 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46749 * 300.00048 * 3 2 1 28 28 H 1.09002 * 109.47036 * 59.99833 * 3 2 1 29 29 H 0.96701 * 113.99337 * 299.99712 * 4 2 1 30 30 H 1.08999 * 110.72530 * 85.79342 * 7 5 2 31 31 H 1.09007 * 110.87119 * 322.58343 * 7 5 2 32 32 H 1.08999 * 110.31110 * 263.03722 * 8 7 5 33 33 H 1.09009 * 110.39351 * 140.91611 * 8 7 5 34 34 H 1.09001 * 109.91466 * 241.87553 * 9 8 7 35 35 H 1.08999 * 109.92220 * 120.57801 * 9 8 7 36 36 H 1.09003 * 109.47426 * 312.25451 * 11 10 9 37 37 H 1.08994 * 109.47443 * 192.25155 * 11 10 9 38 38 H 1.09001 * 109.46960 * 65.88877 * 12 11 10 39 39 H 1.09004 * 109.47154 * 305.89448 * 12 11 10 40 40 H 1.08997 * 109.47101 * 60.00181 * 13 12 11 41 41 H 1.09004 * 109.47205 * 300.00114 * 13 12 11 42 42 H 1.09004 * 109.46870 * 299.99934 * 14 13 12 43 43 H 1.09001 * 109.47307 * 59.99400 * 14 13 12 44 44 H 0.97003 * 120.00161 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.7017 -0.2138 2.1527 7 6 3.5857 -0.8263 1.2273 8 6 3.8621 -2.0470 2.1346 9 6 2.5505 -2.8538 2.1340 10 7 1.6028 -2.1406 1.2503 11 6 0.2252 -2.2669 1.7444 12 6 0.0536 -1.4106 3.0007 13 6 -1.3332 -1.6549 3.5989 14 6 -1.5051 -0.7982 4.8548 15 6 -2.8713 -1.0383 5.4437 16 1 -3.5491 -1.7329 4.9697 17 6 -3.2557 -0.3721 6.5880 18 7 -2.4298 0.4725 7.1659 19 14 -4.9490 -0.6703 7.3183 20 1 -5.0888 -2.1052 7.6744 21 1 -5.1153 0.1604 8.5379 22 1 -5.9886 -0.3036 6.3233 23 1 -0.3633 0.2290 1.0018 24 1 -0.3633 0.7531 -0.6992 25 1 -0.3633 -0.9821 -0.3026 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9565 0.8900 29 1 1.7210 -1.5952 -1.2328 30 1 4.0394 0.0736 1.6426 31 1 3.9483 -1.0077 0.2154 32 1 4.1046 -1.7198 3.1456 33 1 4.6756 -2.6471 1.7266 34 1 2.1469 -2.9070 3.1451 35 1 2.7321 -3.8578 1.7505 36 1 0.0196 -3.3100 1.9849 37 1 -0.4690 -1.9276 0.9758 38 1 0.1563 -0.3574 2.7394 39 1 0.8168 -1.6798 3.7310 40 1 -1.4358 -2.7081 3.8602 41 1 -2.0965 -1.3858 2.8686 42 1 -0.7419 -1.0670 5.5852 43 1 -1.4026 0.2550 4.5932 44 1 -2.7002 0.9415 7.9708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:46 Heat of formation + Delta-G solvation = -86.887438 kcal Electronic energy + Delta-G solvation = -20242.747865 eV Core-core repulsion = 17386.335699 eV Total energy + Delta-G solvation = -2856.412167 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19884 -37.79946 -36.48059 -34.74807 -33.23971 -32.71033 -29.41805 -29.07067 -28.15995 -26.30802 -24.28328 -22.41807 -22.01386 -21.62583 -20.35114 -18.47419 -17.52092 -17.37185 -16.65876 -16.43608 -15.95102 -15.69806 -14.98492 -14.72319 -14.45438 -14.30865 -13.96424 -13.76303 -13.47863 -13.25311 -13.19574 -13.07491 -12.84675 -12.65791 -12.58240 -12.41564 -12.19435 -12.10896 -12.04156 -11.89112 -11.62238 -11.42435 -11.21583 -11.13920 -11.07275 -10.68326 -10.57568 -9.29520 -8.22144 -6.34062 1.38040 1.41156 1.49198 2.39036 2.97372 3.10556 3.41431 3.71212 3.71762 3.97989 4.06595 4.10328 4.14231 4.22582 4.25525 4.42465 4.51919 4.55651 4.66379 4.70301 4.77512 4.88340 4.90149 4.97210 4.98404 4.99716 5.03757 5.08849 5.15121 5.18024 5.21707 5.25844 5.32112 5.40633 5.45206 5.53749 5.72267 5.83320 5.96138 6.06884 6.22948 6.83134 6.96647 7.35633 8.89327 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.004430 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.990400 B = 6319.578857 C = 6612.572651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.151 3.849 3 C -0.141 4.141 4 O -0.563 6.563 5 C 0.026 3.974 6 H 0.056 0.944 7 C -0.111 4.111 8 C -0.128 4.128 9 C 0.029 3.971 10 N -0.505 5.505 11 C 0.039 3.961 12 C -0.140 4.140 13 C -0.094 4.094 14 C 0.025 3.975 15 C -0.546 4.546 16 H 0.060 0.940 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.266 1.266 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.386 0.614 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.053 0.947 42 H -0.016 1.016 43 H -0.012 1.012 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.012 -3.674 -14.777 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.109 3.891 3 C -0.199 4.199 4 O -0.371 6.371 5 C -0.083 4.083 6 H 0.074 0.926 7 C -0.149 4.149 8 C -0.166 4.166 9 C -0.099 4.099 10 N -0.228 5.228 11 C -0.089 4.089 12 C -0.178 4.178 13 C -0.132 4.132 14 C -0.012 4.012 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.789 3.211 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.190 1.190 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.236 0.764 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.003 0.997 43 H 0.006 0.994 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.309 -3.226 -15.280 19.282 hybrid contribution -1.209 -0.078 1.994 2.333 sum 10.100 -3.305 -13.286 17.014 Atomic orbital electron populations 1.22776 0.96198 1.02909 1.02191 1.20883 0.92135 0.92155 0.83882 1.21797 1.02180 0.93255 1.02637 1.86388 1.77457 1.30012 1.43248 1.23659 0.96295 0.90202 0.98149 0.92572 1.22416 0.93564 0.97974 1.00916 1.22387 0.97378 0.96911 0.99971 1.22923 0.92560 0.99079 0.95324 1.64858 1.01761 1.08842 1.47319 1.22614 0.91024 0.99970 0.95272 1.22162 0.97128 1.00546 0.98009 1.21361 0.95917 0.99121 0.96776 1.19001 0.95021 0.94094 0.93072 1.21707 1.01503 1.24825 1.10326 0.92177 1.26005 1.01686 0.94734 0.97435 1.70096 1.37988 1.28648 1.20757 0.85504 0.79288 0.78524 0.77777 1.19144 1.20778 1.19044 0.92599 0.91960 0.90844 0.91373 0.91497 0.91227 0.76424 0.90951 0.89932 0.91945 0.89649 0.94582 0.89370 0.90743 0.88756 0.92287 0.93657 0.93261 0.92829 0.99743 0.99398 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.22 7.34 71.98 0.53 -3.69 16 2 C 0.15 3.35 0.92 -10.79 -0.01 3.34 16 3 C -0.14 -2.92 8.59 71.99 0.62 -2.30 16 4 O -0.56 -12.57 12.02 -148.98 -1.79 -14.36 16 5 C 0.03 0.60 1.49 45.26 0.07 0.66 16 6 H 0.06 1.56 5.35 -2.38 -0.01 1.55 16 7 C -0.11 -2.26 5.51 31.80 0.18 -2.09 16 8 C -0.13 -2.51 6.93 31.47 0.22 -2.29 16 9 C 0.03 0.64 6.42 86.44 0.56 1.20 16 10 N -0.51 -11.63 4.62 -858.28 -3.96 -15.59 16 11 C 0.04 1.02 4.67 86.31 0.40 1.42 16 12 C -0.14 -4.63 3.82 30.59 0.12 -4.51 16 13 C -0.09 -3.82 5.15 30.59 0.16 -3.66 16 14 C 0.03 1.36 4.97 29.85 0.15 1.50 16 15 C -0.55 -31.54 9.11 25.60 0.23 -31.30 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 18 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 19 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 H 0.06 1.46 5.87 -2.39 -0.01 1.45 16 24 H 0.06 1.35 8.02 -2.39 -0.02 1.33 16 25 H 0.07 1.60 6.07 -2.39 -0.01 1.58 16 26 H 0.07 1.32 7.33 -2.39 -0.02 1.30 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.39 7.46 8.46 -74.06 -0.63 6.83 16 30 H 0.07 1.40 8.03 -2.39 -0.02 1.38 16 31 H 0.08 1.70 7.27 -2.38 -0.02 1.68 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.04 0.92 6.30 -2.39 -0.02 0.90 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 37 H 0.09 2.33 4.81 -2.39 -0.01 2.32 16 38 H 0.06 2.01 4.77 -2.39 -0.01 2.00 16 39 H 0.04 1.59 6.57 -2.38 -0.02 1.57 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 42 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 43 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -63.85 327.38 0.57 -63.28 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.34 Total: 18.82 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 3.67 Total: -41.32 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -3.68 Total: -72.98 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -1.79 Total: -14.36 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -63.85 0.57 -63.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.605 kcal (2) G-P(sol) polarization free energy of solvation -63.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds