Wall clock time and date at job start Mon Mar 30 2020 06:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47387 * 2 1 4 4 C 1.53003 * 109.46928 * 120.00010 * 2 1 3 5 5 H 1.08998 * 110.45728 * 291.58383 * 4 2 1 6 6 C 1.54476 * 110.51232 * 54.19076 * 4 2 1 7 7 O 1.44426 * 104.80712 * 142.76089 * 6 4 2 8 8 C 1.44422 * 105.27319 * 319.48760 * 7 6 4 9 9 C 1.54517 * 110.51078 * 168.97880 * 4 2 1 10 10 H 1.08995 * 110.50517 * 122.57308 * 9 4 2 11 11 N 1.46900 * 110.50830 * 359.86314 * 9 4 2 12 12 C 1.46899 * 110.99459 * 155.01716 * 11 9 4 13 13 C 1.46901 * 110.99802 * 278.96420 * 11 9 4 14 14 C 1.53002 * 109.46860 * 162.03110 * 13 11 9 15 15 C 1.53000 * 109.47111 * 180.02562 * 14 13 11 16 16 C 1.50705 * 109.47186 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99552 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99721 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99504 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00348 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46786 * 90.00382 * 20 18 16 22 22 H 1.48495 * 109.47273 * 210.00305 * 20 18 16 23 23 H 1.48501 * 109.47088 * 330.00650 * 20 18 16 24 24 H 1.09005 * 109.46996 * 300.00311 * 1 2 3 25 25 H 1.09003 * 109.46703 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.47432 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46996 * 239.99688 * 2 1 3 28 28 H 1.09003 * 109.47270 * 185.10475 * 3 2 1 29 29 H 1.08999 * 109.47398 * 305.10161 * 3 2 1 30 30 H 1.08994 * 109.47345 * 65.10839 * 3 2 1 31 31 H 1.09002 * 110.36916 * 261.59438 * 6 4 2 32 32 H 1.09001 * 110.37174 * 23.81202 * 6 4 2 33 33 H 1.08995 * 110.37150 * 159.34198 * 8 7 6 34 34 H 1.09005 * 110.36951 * 281.68121 * 8 7 6 35 35 H 1.09002 * 109.47574 * 55.88940 * 12 11 9 36 36 H 1.09009 * 109.47075 * 175.88673 * 12 11 9 37 37 H 1.09005 * 109.47200 * 295.88116 * 12 11 9 38 38 H 1.08997 * 109.47417 * 282.02978 * 13 11 9 39 39 H 1.09001 * 109.47087 * 42.03198 * 13 11 9 40 40 H 1.09004 * 109.47202 * 299.99783 * 14 13 11 41 41 H 1.08996 * 109.47633 * 60.00076 * 14 13 11 42 42 H 1.08997 * 109.46943 * 299.99730 * 15 14 13 43 43 H 1.09001 * 109.47311 * 59.99797 * 15 14 13 44 44 H 0.97004 * 119.99589 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.8127 -0.1411 2.1436 6 6 1.4222 -2.1336 1.3489 7 8 2.4826 -2.9643 1.8700 8 6 3.6796 -2.5219 1.1939 9 6 3.5597 -0.9794 1.1430 10 1 4.0836 -0.5267 1.9847 11 7 4.0819 -0.4617 -0.1287 12 6 5.5135 -0.1503 -0.0221 13 6 3.8288 -1.4061 -1.2252 14 6 3.9635 -0.6798 -2.5651 15 6 3.6993 -1.6632 -3.7070 16 6 3.8327 -0.9480 -5.0268 17 1 4.0806 0.1030 -5.0488 18 6 3.6371 -1.6351 -6.2061 19 7 3.7529 -1.0108 -7.3578 20 14 3.2076 -3.4526 -6.1679 21 1 1.7318 -3.6116 -6.1200 22 1 3.7371 -4.1122 -7.3884 23 1 3.8122 -4.0790 -4.9648 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1262 1.4438 -0.0914 29 1 1.6040 1.9820 -0.8407 30 1 1.7534 1.9292 0.9321 31 1 0.5731 -2.1290 2.0324 32 1 1.1134 -2.4831 0.3637 33 1 4.5646 -2.8155 1.7583 34 1 3.7188 -2.9317 0.1846 35 1 6.0544 -1.0364 0.3104 36 1 5.8911 0.1616 -0.9960 37 1 5.6576 0.6550 0.6983 38 1 4.5528 -2.2195 -1.1784 39 1 2.8211 -1.8106 -1.1309 40 1 3.2395 0.1337 -2.6118 41 1 4.9712 -0.2752 -2.6594 42 1 4.4230 -2.4769 -3.6605 43 1 2.6915 -2.0674 -3.6126 44 1 3.6157 -1.4943 -8.1874 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688179032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:41 Heat of formation + Delta-G solvation = -59.656904 kcal Electronic energy + Delta-G solvation = -20689.654590 eV Core-core repulsion = 17834.423228 eV Total energy + Delta-G solvation = -2855.231362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55007 -37.97561 -36.29985 -35.53471 -33.58798 -30.82735 -29.42205 -29.21541 -27.82702 -26.14293 -24.60080 -23.58961 -22.22679 -21.00695 -20.23972 -18.86392 -17.71418 -17.17052 -16.73038 -16.34375 -16.01976 -15.45903 -15.34482 -14.95568 -14.64902 -14.48852 -14.38719 -13.69198 -13.60915 -13.46279 -13.27249 -12.95876 -12.84447 -12.68216 -12.52105 -12.43692 -12.10112 -12.06305 -11.79359 -11.53078 -11.44371 -11.34839 -11.29090 -11.23953 -10.92794 -10.75688 -10.66308 -9.08281 -8.28939 -6.32485 1.34858 1.36342 1.48130 2.35707 2.74480 3.06540 3.26584 3.62228 3.73155 3.91683 4.03548 4.12308 4.25234 4.29786 4.39200 4.48338 4.56661 4.58818 4.62984 4.69316 4.79667 4.86030 4.87158 4.88378 4.92599 4.96320 4.98454 5.06709 5.12191 5.17353 5.20174 5.31165 5.45883 5.53485 5.62071 5.66707 5.72362 5.77873 5.84595 6.10017 6.22717 6.31502 6.76013 7.31998 8.88071 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.005752 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.566392 B = 4866.518345 C = 4909.009396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.100 4.100 5 H 0.095 0.905 6 C 0.043 3.957 7 O -0.393 6.393 8 C 0.005 3.995 9 C 0.058 3.942 10 H 0.106 0.894 11 N -0.521 5.521 12 C 0.019 3.981 13 C 0.059 3.941 14 C -0.083 4.083 15 C -0.010 4.010 16 C -0.529 4.529 17 H 0.031 0.969 18 C 0.003 3.997 19 N -0.952 5.952 20 Si 0.949 3.051 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.247 1.247 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.015 0.985 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 -0.868 21.492 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 C -0.193 4.193 4 C -0.119 4.119 5 H 0.113 0.887 6 C -0.033 4.033 7 O -0.311 6.311 8 C -0.073 4.073 9 C -0.051 4.051 10 H 0.124 0.876 11 N -0.244 5.244 12 C -0.128 4.128 13 C -0.068 4.068 14 C -0.121 4.121 15 C -0.048 4.048 16 C -0.567 4.567 17 H 0.049 0.951 18 C -0.193 4.193 19 N -0.593 5.593 20 Si 0.772 3.228 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.170 1.170 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.882 -0.618 21.382 21.584 hybrid contribution 0.325 -1.048 -0.849 1.387 sum -2.556 -1.666 20.533 20.758 Atomic orbital electron populations 1.21942 0.95605 1.01595 1.01717 1.21069 0.94556 0.97195 0.97395 1.21799 1.03166 0.94575 0.99795 1.22561 0.93561 0.96065 0.99689 0.88682 1.23692 0.91235 0.89057 0.99326 1.89076 1.18062 1.59461 1.64502 1.24418 0.89222 0.95468 0.98223 1.23221 0.96528 0.92728 0.92647 0.87593 1.62222 1.16414 1.42779 1.03024 1.22513 0.86892 1.00713 1.02715 1.22270 1.00508 0.93442 0.90623 1.21256 1.00617 0.97984 0.92288 1.19493 0.96124 0.95794 0.93372 1.21496 1.46992 0.96699 0.91509 0.95097 1.26016 0.94791 1.03579 0.94919 1.70077 1.52065 1.38838 0.98357 0.85682 0.79252 0.79482 0.78387 1.19183 1.20991 1.17022 0.91806 0.93624 0.92658 0.91271 0.90495 0.95056 0.93189 0.87620 0.92860 0.88354 0.91878 0.94944 0.92023 0.89778 0.94552 0.90749 0.93096 0.93425 0.96538 0.96617 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.87 71.98 0.64 -2.52 16 2 C -0.08 -1.94 1.88 -10.79 -0.02 -1.96 16 3 C -0.14 -3.20 8.90 71.98 0.64 -2.56 16 4 C -0.10 -1.99 2.50 -9.78 -0.02 -2.01 16 5 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 6 C 0.04 0.91 5.89 72.48 0.43 1.33 16 7 O -0.39 -9.71 11.65 -148.98 -1.74 -11.45 16 8 C 0.00 0.10 6.84 72.60 0.50 0.60 16 9 C 0.06 1.19 3.01 46.05 0.14 1.32 16 10 H 0.11 1.85 7.87 -2.39 -0.02 1.83 16 11 N -0.52 -12.42 1.53 -890.39 -1.36 -13.78 16 12 C 0.02 0.41 9.31 127.69 1.19 1.60 16 13 C 0.06 1.73 2.25 86.30 0.19 1.92 16 14 C -0.08 -3.18 5.11 30.59 0.16 -3.03 16 15 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 16 C -0.53 -30.83 9.66 25.60 0.25 -30.59 16 17 H 0.03 1.99 7.99 -2.91 -0.02 1.96 16 18 C 0.00 0.20 5.47 84.65 0.46 0.67 16 19 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 20 Si 0.95 44.66 27.47 68.60 1.88 46.55 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 24 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.08 6.75 -2.39 -0.02 1.07 16 27 H 0.07 1.97 4.03 -2.38 -0.01 1.96 16 28 H 0.08 1.94 6.06 -2.39 -0.01 1.92 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.21 7.16 -2.39 -0.02 1.19 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.56 4.90 -2.38 -0.01 1.55 16 35 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 1.51 6.57 -2.38 -0.02 1.50 16 37 H 0.08 1.46 8.14 -2.38 -0.02 1.45 16 38 H 0.04 1.06 6.93 -2.39 -0.02 1.04 16 39 H 0.07 2.22 5.21 -2.39 -0.01 2.20 16 40 H 0.05 2.05 7.87 -2.39 -0.02 2.03 16 41 H 0.05 1.85 6.72 -2.39 -0.02 1.84 16 42 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 43 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 44 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -65.22 323.51 4.65 -60.57 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.89 Total: 13.83 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 4.67 Total: -35.56 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -1.06 Total: -73.95 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -1.74 Total: -11.45 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.55 kcal Total: -65.22 4.65 -60.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688179032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.917 kcal (2) G-P(sol) polarization free energy of solvation -65.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds