Wall clock time and date at job start Mon Mar 30 2020 06:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46898 * 2 1 4 4 C 1.52995 * 109.47477 * 119.99901 * 2 1 3 5 5 H 1.08997 * 110.56438 * 302.67958 * 4 2 1 6 6 C 1.54481 * 110.51149 * 65.35765 * 4 2 1 7 7 O 1.44426 * 104.80433 * 94.66484 * 6 4 2 8 8 C 1.44427 * 105.27219 * 40.51619 * 7 6 4 9 9 C 1.54476 * 104.80354 * 319.48525 * 8 7 6 10 10 H 1.09004 * 110.51474 * 265.19909 * 9 8 7 11 11 N 1.46902 * 110.51467 * 142.62489 * 9 8 7 12 12 C 1.46898 * 110.99676 * 59.94769 * 11 9 8 13 13 C 1.46894 * 111.00150 * 183.90622 * 11 9 8 14 14 C 1.53001 * 109.47201 * 170.00177 * 13 11 9 15 15 C 1.53003 * 109.47382 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46888 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00509 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99906 * 179.72329 * 16 15 14 19 19 N 1.31520 * 119.99833 * 0.27488 * 18 16 15 20 20 Si 1.86797 * 120.00355 * 180.27191 * 18 16 15 21 21 H 1.48496 * 109.47019 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47146 * 119.99958 * 20 18 16 23 23 H 1.48500 * 109.47522 * 240.00098 * 20 18 16 24 24 H 1.09000 * 109.46960 * 299.99631 * 1 2 3 25 25 H 1.08999 * 109.47596 * 60.00015 * 1 2 3 26 26 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46960 * 240.00368 * 2 1 3 28 28 H 1.09006 * 109.46975 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47252 * 299.99879 * 3 2 1 30 30 H 1.08998 * 109.47321 * 59.99964 * 3 2 1 31 31 H 1.09004 * 110.37312 * 335.83785 * 6 4 2 32 32 H 1.09001 * 110.46989 * 213.54448 * 6 4 2 33 33 H 1.09004 * 110.37005 * 200.65586 * 8 7 6 34 34 H 1.08995 * 110.46825 * 78.36367 * 8 7 6 35 35 H 1.09002 * 109.47044 * 189.20177 * 12 11 9 36 36 H 1.08994 * 109.47612 * 309.20787 * 12 11 9 37 37 H 1.09006 * 109.46974 * 69.21033 * 12 11 9 38 38 H 1.08998 * 109.47436 * 49.99715 * 13 11 9 39 39 H 1.09004 * 109.47201 * 290.00068 * 13 11 9 40 40 H 1.08998 * 109.47302 * 59.99457 * 14 13 11 41 41 H 1.09004 * 109.46954 * 300.00043 * 14 13 11 42 42 H 1.08994 * 109.47141 * 59.99853 * 15 14 13 43 43 H 1.08997 * 109.46824 * 299.99580 * 15 14 13 44 44 H 0.96997 * 120.00162 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6482 -0.2496 2.1504 6 6 1.6517 -2.2158 1.2078 7 8 2.8026 -2.8806 0.6427 8 6 3.9471 -2.2367 1.2438 9 6 3.5849 -0.7353 1.2735 10 1 3.9873 -0.2278 0.3967 11 7 4.0860 -0.1090 2.5042 12 6 5.5469 -0.2304 2.5994 13 6 3.6680 1.2968 2.5874 14 6 3.9886 1.8426 3.9803 15 6 3.5526 3.3066 4.0673 16 6 3.8678 3.8439 5.4395 17 1 4.3322 3.2050 6.1761 18 6 3.5681 5.1527 5.7530 19 7 3.0021 5.9306 4.8561 20 14 3.9657 5.8210 7.4514 21 1 4.5951 4.7529 8.2687 22 1 4.9037 6.9653 7.3259 23 1 2.7148 6.2762 8.1096 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 0.7784 -2.3636 0.5725 32 1 1.4554 -2.5867 2.2138 33 1 4.8372 -2.4003 0.6362 34 1 4.1058 -2.6087 2.2559 35 1 5.8746 0.0923 3.5876 36 1 5.8362 -1.2694 2.4419 37 1 6.0139 0.3961 1.8393 38 1 2.5954 1.3682 2.4071 39 1 4.2021 1.8797 1.8370 40 1 5.0612 1.7711 4.1606 41 1 3.4545 1.2596 4.7307 42 1 2.4800 3.3776 3.8873 43 1 4.0864 3.8898 3.3169 44 1 2.7908 6.8512 5.0767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688179034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:44 Heat of formation + Delta-G solvation = -64.113242 kcal Electronic energy + Delta-G solvation = -20157.711173 eV Core-core repulsion = 17302.286569 eV Total energy + Delta-G solvation = -2855.424603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.24940 -36.89128 -35.53114 -33.65132 -31.54829 -29.65108 -28.64089 -27.68622 -26.47773 -25.08736 -22.94530 -22.45651 -20.50152 -20.10868 -19.45024 -16.64804 -16.43219 -16.20768 -15.38606 -14.80501 -14.66690 -14.37033 -14.24936 -13.88790 -13.61740 -13.19404 -12.76724 -12.39584 -12.23301 -12.16701 -12.07952 -11.77537 -11.48020 -11.46282 -11.23737 -11.14009 -10.84597 -10.70068 -10.56469 -10.47178 -10.41709 -10.22960 -9.73631 -9.58311 -9.32009 -9.03296 -8.34043 -8.09669 -5.99241 -4.01076 3.31360 3.38880 3.43319 3.82822 4.16817 4.43543 4.48104 4.74036 4.77648 5.00739 5.12810 5.21611 5.33356 5.36768 5.39840 5.44402 5.56485 5.61616 5.65943 5.68857 5.74320 5.77532 5.80108 5.86442 5.94793 5.97976 6.08794 6.11010 6.14322 6.28553 6.31279 6.47535 6.66971 6.69692 6.81597 7.12115 7.34791 7.37414 7.69327 7.84011 8.01336 8.44978 9.06349 9.63017 11.12224 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026832 B = 0.004643 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.272011 B = 6028.757728 C = 6645.982422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.154 4.154 4 C -0.113 4.113 5 H 0.098 0.902 6 C 0.050 3.950 7 O -0.378 6.378 8 C 0.052 3.948 9 C 0.053 3.947 10 H 0.055 0.945 11 N -0.533 5.533 12 C 0.021 3.979 13 C 0.051 3.949 14 C -0.106 4.106 15 C 0.023 3.977 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.024 0.976 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.342 -14.444 -10.110 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.211 4.211 4 C -0.132 4.132 5 H 0.117 0.883 6 C -0.026 4.026 7 O -0.297 6.297 8 C -0.025 4.025 9 C -0.056 4.056 10 H 0.073 0.927 11 N -0.258 5.258 12 C -0.127 4.127 13 C -0.076 4.076 14 C -0.144 4.144 15 C -0.015 4.015 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.608 -14.702 -9.899 17.796 hybrid contribution 0.622 1.202 0.399 1.411 sum -0.987 -13.500 -9.500 16.537 Atomic orbital electron populations 1.21899 0.95046 1.01519 1.02169 1.21103 0.95781 0.96319 0.97257 1.22065 1.01141 0.95566 1.02326 1.22662 0.94478 0.96271 0.99813 0.88337 1.23522 0.89604 0.90747 0.98764 1.89085 1.15251 1.58974 1.66345 1.23480 0.89488 0.90849 0.98732 1.23071 0.94945 0.95227 0.92373 0.92711 1.62201 1.11336 1.17832 1.34393 1.22431 0.87597 1.00566 1.02117 1.22549 1.00687 0.85205 0.99117 1.21664 1.00168 0.99036 0.93495 1.19061 0.96493 0.89069 0.96864 1.21287 1.39660 0.96208 0.98379 0.92665 1.25023 0.95307 0.97128 0.97031 1.69977 1.42760 1.06943 1.33925 0.86557 0.78039 0.78934 0.84614 1.19730 1.21071 1.21017 0.92252 0.92614 0.92693 0.91226 0.92650 0.92802 0.91596 0.89078 0.92097 0.89694 0.91165 0.90507 0.92100 0.95776 0.90473 0.95302 0.93510 0.92698 0.96694 0.96896 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.01 37.16 0.33 -1.13 16 2 C -0.09 -0.96 2.35 -90.62 -0.21 -1.17 16 3 C -0.15 -1.90 7.73 37.16 0.29 -1.61 16 4 C -0.11 -1.37 1.90 -89.05 -0.17 -1.54 16 5 H 0.10 1.34 6.65 -51.93 -0.35 0.99 16 6 C 0.05 0.57 7.03 37.93 0.27 0.83 16 7 O -0.38 -4.89 11.65 -35.23 -0.41 -5.30 16 8 C 0.05 0.61 5.92 37.93 0.22 0.84 16 9 C 0.05 0.67 2.05 -66.14 -0.14 0.54 16 10 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 11 N -0.53 -7.77 4.55 -233.00 -1.06 -8.83 16 12 C 0.02 0.28 9.09 60.06 0.55 0.82 16 13 C 0.05 0.87 3.55 -3.83 -0.01 0.86 16 14 C -0.11 -2.18 5.07 -26.73 -0.14 -2.32 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.48 6.41 -51.93 -0.33 0.15 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.72 5.47 -51.93 -0.28 0.43 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.91 6.69 -51.93 -0.35 0.56 16 31 H 0.09 0.89 6.14 -51.93 -0.32 0.58 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 35 H 0.08 1.08 6.73 -51.93 -0.35 0.73 16 36 H 0.06 0.67 6.68 -51.93 -0.35 0.33 16 37 H 0.02 0.31 8.07 -51.93 -0.42 -0.10 16 38 H 0.08 1.31 4.20 -51.93 -0.22 1.09 16 39 H 0.03 0.51 7.48 -51.93 -0.39 0.12 16 40 H 0.05 0.96 6.67 -51.93 -0.35 0.61 16 41 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -29.95 328.36 -8.15 -38.10 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.78 Total: -2.44 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 0.44 Total: -16.94 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.32 Total: -35.09 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.41 Total: -5.30 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.95 -8.15 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688179034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.015 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds