Wall clock time and date at job start Mon Mar 30 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46898 * 2 1 4 4 C 1.52995 * 109.47477 * 119.99901 * 2 1 3 5 5 H 1.08997 * 110.56438 * 302.67958 * 4 2 1 6 6 C 1.54481 * 110.51149 * 65.35765 * 4 2 1 7 7 O 1.44426 * 104.80433 * 94.66484 * 6 4 2 8 8 C 1.44427 * 105.27219 * 40.51619 * 7 6 4 9 9 C 1.54476 * 104.80354 * 319.48525 * 8 7 6 10 10 H 1.09004 * 110.51474 * 265.19909 * 9 8 7 11 11 N 1.46902 * 110.51467 * 142.62489 * 9 8 7 12 12 C 1.46898 * 110.99676 * 59.94769 * 11 9 8 13 13 C 1.46894 * 111.00150 * 183.90622 * 11 9 8 14 14 C 1.53001 * 109.47201 * 170.00177 * 13 11 9 15 15 C 1.53003 * 109.47382 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46888 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00509 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99906 * 179.72329 * 16 15 14 19 19 N 1.31520 * 119.99833 * 0.27488 * 18 16 15 20 20 Si 1.86797 * 120.00355 * 180.27191 * 18 16 15 21 21 H 1.48496 * 109.47019 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47146 * 119.99958 * 20 18 16 23 23 H 1.48500 * 109.47522 * 240.00098 * 20 18 16 24 24 H 1.09000 * 109.46960 * 299.99631 * 1 2 3 25 25 H 1.08999 * 109.47596 * 60.00015 * 1 2 3 26 26 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46960 * 240.00368 * 2 1 3 28 28 H 1.09006 * 109.46975 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47252 * 299.99879 * 3 2 1 30 30 H 1.08998 * 109.47321 * 59.99964 * 3 2 1 31 31 H 1.09004 * 110.37312 * 335.83785 * 6 4 2 32 32 H 1.09001 * 110.46989 * 213.54448 * 6 4 2 33 33 H 1.09004 * 110.37005 * 200.65586 * 8 7 6 34 34 H 1.08995 * 110.46825 * 78.36367 * 8 7 6 35 35 H 1.09002 * 109.47044 * 189.20177 * 12 11 9 36 36 H 1.08994 * 109.47612 * 309.20787 * 12 11 9 37 37 H 1.09006 * 109.46974 * 69.21033 * 12 11 9 38 38 H 1.08998 * 109.47436 * 49.99715 * 13 11 9 39 39 H 1.09004 * 109.47201 * 290.00068 * 13 11 9 40 40 H 1.08998 * 109.47302 * 59.99457 * 14 13 11 41 41 H 1.09004 * 109.46954 * 300.00043 * 14 13 11 42 42 H 1.08994 * 109.47141 * 59.99853 * 15 14 13 43 43 H 1.08997 * 109.46824 * 299.99580 * 15 14 13 44 44 H 0.96997 * 120.00162 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6482 -0.2496 2.1504 6 6 1.6517 -2.2158 1.2078 7 8 2.8026 -2.8806 0.6427 8 6 3.9471 -2.2367 1.2438 9 6 3.5849 -0.7353 1.2735 10 1 3.9873 -0.2278 0.3967 11 7 4.0860 -0.1090 2.5042 12 6 5.5469 -0.2304 2.5994 13 6 3.6680 1.2968 2.5874 14 6 3.9886 1.8426 3.9803 15 6 3.5526 3.3066 4.0673 16 6 3.8678 3.8439 5.4395 17 1 4.3322 3.2050 6.1761 18 6 3.5681 5.1527 5.7530 19 7 3.0021 5.9306 4.8561 20 14 3.9657 5.8210 7.4514 21 1 4.5951 4.7529 8.2687 22 1 4.9037 6.9653 7.3259 23 1 2.7148 6.2762 8.1096 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 0.7784 -2.3636 0.5725 32 1 1.4554 -2.5867 2.2138 33 1 4.8372 -2.4003 0.6362 34 1 4.1058 -2.6087 2.2559 35 1 5.8746 0.0923 3.5876 36 1 5.8362 -1.2694 2.4419 37 1 6.0139 0.3961 1.8393 38 1 2.5954 1.3682 2.4071 39 1 4.2021 1.8797 1.8370 40 1 5.0612 1.7711 4.1606 41 1 3.4545 1.2596 4.7307 42 1 2.4800 3.3776 3.8873 43 1 4.0864 3.8898 3.3169 44 1 2.7908 6.8512 5.0767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688179034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:43 Heat of formation + Delta-G solvation = -82.725155 kcal Electronic energy + Delta-G solvation = -20158.518246 eV Core-core repulsion = 17302.286569 eV Total energy + Delta-G solvation = -2856.231677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25590 -38.11940 -36.49393 -35.60590 -33.39418 -30.75282 -29.72081 -28.98679 -27.65576 -26.60487 -24.15406 -23.87762 -21.78311 -21.50954 -20.54869 -18.48012 -17.67029 -17.35009 -16.53620 -16.41468 -16.03321 -15.67317 -15.32476 -15.08836 -14.81242 -14.39505 -14.26522 -13.84696 -13.52574 -13.32611 -13.12720 -13.09240 -12.97468 -12.74581 -12.52862 -12.42536 -12.38331 -12.19627 -12.08161 -11.61153 -11.52336 -11.39227 -11.33147 -11.18574 -11.04245 -10.66341 -10.55593 -9.29572 -8.20426 -6.31212 1.39571 1.39809 1.53325 2.40465 2.77866 3.12841 3.14442 3.47063 3.79155 3.84161 4.07344 4.10519 4.19170 4.27973 4.32527 4.44117 4.52434 4.55971 4.61086 4.68225 4.73185 4.75682 4.80196 4.83843 4.85073 4.92923 4.96142 5.02085 5.03533 5.10822 5.15466 5.23981 5.26420 5.40076 5.48169 5.52613 5.73852 5.74886 5.85793 6.05841 6.20530 6.27882 6.85649 7.38117 8.91642 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026832 B = 0.004643 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.272011 B = 6028.757728 C = 6645.982422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.152 4.152 4 C -0.113 4.113 5 H 0.081 0.919 6 C 0.052 3.948 7 O -0.389 6.389 8 C 0.056 3.944 9 C 0.052 3.948 10 H 0.054 0.946 11 N -0.536 5.536 12 C 0.019 3.981 13 C 0.067 3.933 14 C -0.091 4.091 15 C 0.028 3.972 16 C -0.541 4.541 17 H 0.058 0.942 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.277 1.277 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.021 0.979 40 H 0.049 0.951 41 H 0.050 0.950 42 H -0.009 1.009 43 H -0.012 1.012 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 -15.744 -10.005 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.209 4.209 4 C -0.132 4.132 5 H 0.099 0.901 6 C -0.024 4.024 7 O -0.307 6.307 8 C -0.021 4.021 9 C -0.056 4.056 10 H 0.072 0.928 11 N -0.261 5.261 12 C -0.129 4.129 13 C -0.060 4.060 14 C -0.129 4.129 15 C -0.009 4.009 16 C -0.579 4.579 17 H 0.076 0.924 18 C -0.197 4.197 19 N -0.574 5.574 20 Si 0.788 3.212 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.010 0.990 43 H 0.007 0.993 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.339 -16.022 -9.798 18.828 hybrid contribution 0.535 1.607 0.333 1.726 sum -0.804 -14.416 -9.464 17.264 Atomic orbital electron populations 1.21885 0.93935 1.02504 1.02103 1.21062 0.96683 0.95137 0.96988 1.22030 1.00498 0.96592 1.01748 1.22643 0.94046 0.97047 0.99471 0.90092 1.23587 0.89776 0.89696 0.99355 1.89079 1.15806 1.59240 1.66620 1.23502 0.89894 0.89572 0.99178 1.23122 0.95383 0.95895 0.91238 0.92835 1.62129 1.12401 1.15770 1.35795 1.22491 0.86579 1.02252 1.01541 1.22221 1.00560 0.86832 0.96428 1.21412 0.99977 0.95731 0.95747 1.18939 0.94638 0.92046 0.95291 1.21706 1.39886 0.96849 0.99462 0.92391 1.25963 0.94919 0.97444 1.01407 1.70102 1.43604 1.07425 1.36221 0.85416 0.78070 0.78361 0.79321 1.18653 1.20341 1.20293 0.93239 0.91800 0.91170 0.90562 0.93577 0.91787 0.93710 0.87367 0.91870 0.87957 0.91134 0.91536 0.89469 0.95745 0.90660 0.96048 0.93246 0.93095 0.99045 0.99336 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.01 71.98 0.65 -2.04 16 2 C -0.08 -1.69 2.35 -10.80 -0.03 -1.72 16 3 C -0.15 -3.74 7.73 71.98 0.56 -3.18 16 4 C -0.11 -2.62 1.90 -9.78 -0.02 -2.64 16 5 H 0.08 2.19 6.65 -2.39 -0.02 2.17 16 6 C 0.05 1.08 7.03 72.49 0.51 1.59 16 7 O -0.39 -9.14 11.65 -148.98 -1.74 -10.87 16 8 C 0.06 1.19 5.92 72.48 0.43 1.62 16 9 C 0.05 1.27 2.05 45.93 0.09 1.36 16 10 H 0.05 1.34 6.44 -2.38 -0.02 1.32 16 11 N -0.54 -15.23 4.55 -891.08 -4.05 -19.29 16 12 C 0.02 0.48 9.09 127.69 1.16 1.64 16 13 C 0.07 2.32 3.55 86.30 0.31 2.62 16 14 C -0.09 -3.82 5.07 30.60 0.16 -3.66 16 15 C 0.03 1.52 4.97 29.85 0.15 1.67 16 16 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.00 0.02 5.46 84.65 0.46 0.48 16 19 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 20 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.06 6.41 -2.39 -0.02 1.05 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.20 5.47 -2.38 -0.01 1.19 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.28 6.69 -2.39 -0.02 1.26 16 31 H 0.11 1.85 6.14 -2.38 -0.01 1.83 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.52 7.79 -2.39 -0.02 1.50 16 35 H 0.07 1.81 6.73 -2.39 -0.02 1.79 16 36 H 0.09 1.72 6.68 -2.39 -0.02 1.71 16 37 H 0.02 0.61 8.07 -2.38 -0.02 0.59 16 38 H 0.08 2.64 4.20 -2.39 -0.01 2.63 16 39 H 0.02 0.77 7.48 -2.38 -0.02 0.75 16 40 H 0.05 2.03 6.67 -2.39 -0.02 2.02 16 41 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 42 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -64.01 328.36 2.13 -61.89 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.95 Total: 11.81 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.66 Total: -33.30 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -3.77 Total: -76.18 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.74 Total: -10.87 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.01 2.13 -61.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688179034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.840 kcal (2) G-P(sol) polarization free energy of solvation -64.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds