Wall clock time and date at job start Mon Mar 30 2020 06:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.08997 * 110.45769 * 57.38559 * 4 2 1 6 6 C 1.54483 * 110.50880 * 294.64077 * 4 2 1 7 7 O 1.44425 * 104.80424 * 217.37639 * 6 4 2 8 8 C 1.44427 * 105.27252 * 40.50702 * 7 6 4 9 9 C 1.54473 * 104.80919 * 319.49088 * 8 7 6 10 10 H 1.08992 * 110.51521 * 142.61787 * 9 8 7 11 11 N 1.46895 * 110.51321 * 265.33773 * 9 8 7 12 12 C 1.46896 * 111.00445 * 53.58805 * 11 9 8 13 13 C 1.46904 * 110.99850 * 289.63600 * 11 9 8 14 14 C 1.52994 * 109.47370 * 189.99979 * 13 11 9 15 15 C 1.53008 * 109.47036 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47030 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99754 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00018 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00154 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99964 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47162 * 90.00249 * 20 18 16 22 22 H 1.48499 * 109.46962 * 209.99820 * 20 18 16 23 23 H 1.48494 * 109.47038 * 329.99879 * 20 18 16 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.09004 * 110.36992 * 336.20804 * 6 4 2 32 32 H 1.09002 * 110.37282 * 98.54234 * 6 4 2 33 33 H 1.09003 * 110.37287 * 200.65561 * 8 7 6 34 34 H 1.09003 * 110.46081 * 78.37453 * 8 7 6 35 35 H 1.09009 * 109.46950 * 60.00575 * 12 11 9 36 36 H 1.08994 * 109.47405 * 180.02562 * 12 11 9 37 37 H 1.08999 * 109.47247 * 300.01020 * 12 11 9 38 38 H 1.09002 * 109.47095 * 310.00686 * 13 11 9 39 39 H 1.09002 * 109.46657 * 69.99689 * 13 11 9 40 40 H 1.08996 * 109.47265 * 300.00135 * 14 13 11 41 41 H 1.08997 * 109.47116 * 60.00524 * 14 13 11 42 42 H 1.09002 * 109.46623 * 299.99811 * 15 14 13 43 43 H 1.08997 * 109.46967 * 60.00155 * 15 14 13 44 44 H 0.97002 * 119.99917 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6481 -0.2475 -2.1493 6 6 1.6517 -2.2158 -1.2079 7 8 2.7846 -2.9074 -1.7773 8 6 3.9471 -2.2366 -1.2440 9 6 3.5849 -0.7352 -1.2736 10 1 3.9852 -0.2283 -0.3957 11 7 4.0859 -0.1089 -2.5043 12 6 3.6232 -0.8386 -3.6924 13 6 5.5514 -0.0093 -2.4854 14 6 6.0185 0.8624 -3.6527 15 6 7.5450 0.9656 -3.6333 16 6 8.0050 1.8247 -4.7828 17 1 7.2810 2.2545 -5.4593 18 6 9.3500 2.0629 -4.9703 19 7 10.2315 1.5408 -4.1456 20 14 9.9203 3.1273 -6.3956 21 1 9.9836 4.5456 -5.9599 22 1 11.2674 2.6842 -6.8361 23 1 8.9632 2.9982 -7.5236 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.4889 -2.5372 -0.1791 32 1 0.7587 -2.3926 -1.8073 33 1 4.8175 -2.4293 -1.8713 34 1 4.1383 -2.5607 -0.2210 35 1 2.5334 -0.8371 -3.7182 36 1 4.0088 -0.3541 -4.5894 37 1 3.9842 -1.8662 -3.6511 38 1 5.8730 0.4393 -1.5455 39 1 5.9844 -1.0052 -2.5795 40 1 5.6970 0.4137 -4.5926 41 1 5.5855 1.8582 -3.5586 42 1 7.8668 1.4141 -2.6934 43 1 7.9776 -0.0304 -3.7277 44 1 11.1778 1.7081 -4.2778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688179037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:47 Heat of formation + Delta-G solvation = -64.630704 kcal Electronic energy + Delta-G solvation = -19916.629595 eV Core-core repulsion = 17061.182553 eV Total energy + Delta-G solvation = -2855.447042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42498 -36.59572 -35.84268 -33.57001 -31.46068 -29.51629 -28.78410 -27.17391 -26.98569 -25.06093 -23.21431 -22.50601 -20.67443 -19.75779 -19.54365 -16.61328 -16.38783 -16.17916 -15.63012 -15.06428 -14.63796 -14.39541 -14.33037 -13.63092 -13.41533 -13.19437 -12.97211 -12.33868 -12.26528 -12.24447 -11.97565 -11.70193 -11.57060 -11.48479 -11.18063 -11.13606 -10.84803 -10.78803 -10.70042 -10.52664 -10.48526 -10.41272 -9.91161 -9.55864 -9.29522 -9.02806 -8.31709 -7.96566 -5.97206 -3.99074 3.34064 3.40048 3.43835 3.88006 4.08119 4.43836 4.49200 4.65232 4.72759 4.91321 5.07228 5.14353 5.20377 5.23410 5.38685 5.45020 5.52594 5.53188 5.57627 5.62887 5.68584 5.74566 5.76058 5.78278 5.93104 5.95552 6.00150 6.10983 6.21886 6.26344 6.30427 6.36484 6.64999 6.73930 6.83580 7.14629 7.37093 7.43771 7.71351 7.86438 8.03424 8.46989 9.08137 9.64858 11.14276 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.034245 B = 0.003938 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.439747 B = 7108.065380 C = 7432.533375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.111 4.111 5 H 0.095 0.905 6 C 0.048 3.952 7 O -0.373 6.373 8 C 0.010 3.990 9 C 0.056 3.944 10 H 0.097 0.903 11 N -0.527 5.527 12 C 0.021 3.979 13 C 0.053 3.947 14 C -0.104 4.104 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.648 -5.652 9.158 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.203 4.203 4 C -0.130 4.130 5 H 0.113 0.887 6 C -0.029 4.029 7 O -0.291 6.291 8 C -0.068 4.068 9 C -0.054 4.054 10 H 0.115 0.885 11 N -0.250 5.250 12 C -0.127 4.127 13 C -0.074 4.074 14 C -0.142 4.142 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.649 -5.360 9.006 21.392 hybrid contribution 0.829 -0.108 -0.534 0.992 sum -17.820 -5.468 8.473 20.475 Atomic orbital electron populations 1.21860 0.95187 1.01521 1.01922 1.21094 0.95590 0.96822 0.96823 1.21839 1.01818 0.95107 1.01505 1.22704 0.94776 0.95691 0.99823 0.88700 1.23514 0.90310 0.90746 0.98363 1.89131 1.14928 1.55909 1.69161 1.24137 0.90143 0.93376 0.99143 1.23209 0.94711 0.92549 0.94928 0.88529 1.62299 1.11616 1.50057 1.00993 1.22427 1.00239 0.96564 0.93481 1.22336 0.84886 0.99034 1.01112 1.21643 0.99319 0.98154 0.95054 1.19076 0.88547 0.96876 0.97089 1.21254 0.91817 1.30403 1.12108 0.92699 1.25025 0.96956 0.96112 0.96417 1.69970 1.01456 1.44924 1.37306 0.86603 0.77983 0.80690 0.82784 1.20674 1.21274 1.19881 0.92854 0.92681 0.92495 0.91426 0.93173 0.91931 0.92323 0.92479 0.89439 0.88885 0.92340 0.92106 0.90957 0.94991 0.91357 0.95260 0.93375 0.92633 0.96664 0.96857 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.03 37.16 0.34 -0.76 16 2 C -0.08 -0.74 2.25 -90.62 -0.20 -0.95 16 3 C -0.15 -1.41 8.94 37.16 0.33 -1.07 16 4 C -0.11 -1.15 1.83 -89.05 -0.16 -1.31 16 5 H 0.09 1.08 6.56 -51.93 -0.34 0.74 16 6 C 0.05 0.48 6.27 37.94 0.24 0.72 16 7 O -0.37 -4.91 10.62 -35.23 -0.37 -5.28 16 8 C 0.01 0.13 6.22 37.93 0.24 0.37 16 9 C 0.06 0.69 2.33 -66.15 -0.15 0.53 16 10 H 0.10 1.16 6.32 -51.93 -0.33 0.83 16 11 N -0.53 -7.80 4.73 -233.01 -1.10 -8.91 16 12 C 0.02 0.30 8.27 60.06 0.50 0.80 16 13 C 0.05 0.92 4.62 -3.83 -0.02 0.90 16 14 C -0.10 -2.18 5.08 -26.73 -0.14 -2.31 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 17 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.05 0.36 7.45 -51.93 -0.39 -0.03 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.68 6.52 -51.93 -0.34 0.34 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.51 7.83 -51.93 -0.41 0.11 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.29 5.85 -51.93 -0.30 0.98 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.80 6.43 -51.92 -0.33 0.46 16 36 H 0.07 1.11 6.30 -51.93 -0.33 0.79 16 37 H 0.03 0.48 6.21 -51.93 -0.32 0.15 16 38 H 0.07 1.17 7.99 -51.93 -0.42 0.75 16 39 H 0.03 0.51 6.84 -51.93 -0.36 0.16 16 40 H 0.05 1.00 6.47 -51.93 -0.34 0.67 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 332.05 15.07 5.00 5.00 Total: -1.00 -30.21 332.05 -8.30 -38.51 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -7.96 Total: -3.38 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 0.41 Total: -16.33 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.37 Total: -35.43 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.37 Total: -5.28 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.21 -8.30 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688179037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.120 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds