Wall clock time and date at job start Mon Mar 30 2020 06:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.08997 * 110.45769 * 57.38559 * 4 2 1 6 6 C 1.54483 * 110.50880 * 294.64077 * 4 2 1 7 7 O 1.44425 * 104.80424 * 217.37639 * 6 4 2 8 8 C 1.44427 * 105.27252 * 40.50702 * 7 6 4 9 9 C 1.54473 * 104.80919 * 319.49088 * 8 7 6 10 10 H 1.08992 * 110.51521 * 142.61787 * 9 8 7 11 11 N 1.46895 * 110.51321 * 265.33773 * 9 8 7 12 12 C 1.46896 * 111.00445 * 53.58805 * 11 9 8 13 13 C 1.46904 * 110.99850 * 289.63600 * 11 9 8 14 14 C 1.52994 * 109.47370 * 189.99979 * 13 11 9 15 15 C 1.53008 * 109.47036 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47030 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99754 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00018 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00154 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99964 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47162 * 90.00249 * 20 18 16 22 22 H 1.48499 * 109.46962 * 209.99820 * 20 18 16 23 23 H 1.48494 * 109.47038 * 329.99879 * 20 18 16 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.09004 * 110.36992 * 336.20804 * 6 4 2 32 32 H 1.09002 * 110.37282 * 98.54234 * 6 4 2 33 33 H 1.09003 * 110.37287 * 200.65561 * 8 7 6 34 34 H 1.09003 * 110.46081 * 78.37453 * 8 7 6 35 35 H 1.09009 * 109.46950 * 60.00575 * 12 11 9 36 36 H 1.08994 * 109.47405 * 180.02562 * 12 11 9 37 37 H 1.08999 * 109.47247 * 300.01020 * 12 11 9 38 38 H 1.09002 * 109.47095 * 310.00686 * 13 11 9 39 39 H 1.09002 * 109.46657 * 69.99689 * 13 11 9 40 40 H 1.08996 * 109.47265 * 300.00135 * 14 13 11 41 41 H 1.08997 * 109.47116 * 60.00524 * 14 13 11 42 42 H 1.09002 * 109.46623 * 299.99811 * 15 14 13 43 43 H 1.08997 * 109.46967 * 60.00155 * 15 14 13 44 44 H 0.97002 * 119.99917 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6481 -0.2475 -2.1493 6 6 1.6517 -2.2158 -1.2079 7 8 2.7846 -2.9074 -1.7773 8 6 3.9471 -2.2366 -1.2440 9 6 3.5849 -0.7352 -1.2736 10 1 3.9852 -0.2283 -0.3957 11 7 4.0859 -0.1089 -2.5043 12 6 3.6232 -0.8386 -3.6924 13 6 5.5514 -0.0093 -2.4854 14 6 6.0185 0.8624 -3.6527 15 6 7.5450 0.9656 -3.6333 16 6 8.0050 1.8247 -4.7828 17 1 7.2810 2.2545 -5.4593 18 6 9.3500 2.0629 -4.9703 19 7 10.2315 1.5408 -4.1456 20 14 9.9203 3.1273 -6.3956 21 1 9.9836 4.5456 -5.9599 22 1 11.2674 2.6842 -6.8361 23 1 8.9632 2.9982 -7.5236 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.4889 -2.5372 -0.1791 32 1 0.7587 -2.3926 -1.8073 33 1 4.8175 -2.4293 -1.8713 34 1 4.1383 -2.5607 -0.2210 35 1 2.5334 -0.8371 -3.7182 36 1 4.0088 -0.3541 -4.5894 37 1 3.9842 -1.8662 -3.6511 38 1 5.8730 0.4393 -1.5455 39 1 5.9844 -1.0052 -2.5795 40 1 5.6970 0.4137 -4.5926 41 1 5.5855 1.8582 -3.5586 42 1 7.8668 1.4141 -2.6934 43 1 7.9776 -0.0304 -3.7277 44 1 11.1778 1.7081 -4.2778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688179037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:46 Heat of formation + Delta-G solvation = -83.354802 kcal Electronic energy + Delta-G solvation = -19917.441533 eV Core-core repulsion = 17061.182553 eV Total energy + Delta-G solvation = -2856.258980 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39706 -37.88439 -36.63335 -35.54511 -33.30063 -30.59143 -29.71754 -28.67863 -27.85264 -26.58889 -24.54571 -23.65801 -22.05689 -21.14538 -20.46336 -18.46166 -17.62784 -17.24718 -16.64793 -16.48014 -16.25006 -15.83686 -15.26979 -14.83885 -14.53895 -14.26683 -14.03108 -13.91192 -13.64038 -13.26398 -13.16700 -12.97251 -12.77932 -12.65289 -12.60170 -12.41097 -12.40228 -12.24110 -12.02606 -11.65152 -11.49452 -11.40960 -11.32811 -11.28344 -11.01514 -10.80129 -10.54698 -9.17912 -8.20163 -6.31075 1.39817 1.41303 1.52516 2.40869 2.88965 3.02702 3.12967 3.56013 3.82078 3.85713 4.06989 4.13189 4.21565 4.30901 4.36379 4.40689 4.48406 4.52119 4.61714 4.71825 4.72135 4.77515 4.84537 4.87769 4.90383 4.96416 5.03432 5.08965 5.10001 5.10721 5.22659 5.26664 5.33187 5.50876 5.52121 5.55797 5.73877 5.76964 5.86061 6.10924 6.18048 6.28827 6.85586 7.38139 8.91769 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.034245 B = 0.003938 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.439747 B = 7108.065380 C = 7432.533375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.102 4.102 5 H 0.086 0.914 6 C 0.047 3.953 7 O -0.393 6.393 8 C 0.013 3.987 9 C 0.053 3.947 10 H 0.101 0.899 11 N -0.529 5.529 12 C 0.026 3.974 13 C 0.066 3.934 14 C -0.088 4.088 15 C 0.026 3.974 16 C -0.543 4.543 17 H 0.058 0.942 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.264 1.264 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.024 0.976 40 H 0.048 0.952 41 H 0.052 0.948 42 H -0.007 1.007 43 H -0.011 1.011 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.262 -5.419 9.311 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.202 4.202 4 C -0.121 4.121 5 H 0.104 0.896 6 C -0.029 4.029 7 O -0.312 6.312 8 C -0.066 4.066 9 C -0.056 4.056 10 H 0.119 0.881 11 N -0.251 5.251 12 C -0.122 4.122 13 C -0.062 4.062 14 C -0.126 4.126 15 C -0.011 4.011 16 C -0.581 4.581 17 H 0.076 0.924 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.188 1.188 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.011 0.989 43 H 0.007 0.993 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.288 -5.130 9.166 22.846 hybrid contribution 1.310 -0.202 -0.543 1.432 sum -18.978 -5.332 8.624 21.517 Atomic orbital electron populations 1.21834 0.93827 1.02319 1.02213 1.21072 0.96637 0.95910 0.96216 1.21822 1.00782 0.95931 1.01627 1.22643 0.92887 0.96272 1.00333 0.89588 1.23689 0.89770 0.89957 0.99523 1.89113 1.15763 1.56497 1.69826 1.24084 0.89630 0.93301 0.99559 1.23309 0.96255 0.92381 0.93616 0.88130 1.62240 1.09586 1.50956 1.02340 1.22377 1.01119 0.95861 0.92811 1.22045 0.86838 0.97895 0.99402 1.21381 0.95654 0.98814 0.96762 1.18968 0.91951 0.94836 0.95378 1.21686 0.92454 1.30984 1.12945 0.92390 1.25977 0.97063 0.97431 0.99335 1.70098 1.01912 1.46193 1.39184 0.85451 0.77601 0.78822 0.79206 1.19669 1.20666 1.18826 0.91810 0.91858 0.92801 0.90566 0.91994 0.93471 0.93280 0.90798 0.88065 0.90749 0.90711 0.90456 0.92184 0.95640 0.91215 0.95748 0.93371 0.92951 0.98875 0.99267 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.03 71.98 0.65 -1.10 16 2 C -0.08 -1.21 2.25 -10.79 -0.02 -1.24 16 3 C -0.14 -2.58 8.94 71.98 0.64 -1.93 16 4 C -0.10 -1.92 1.83 -9.78 -0.02 -1.93 16 5 H 0.09 1.80 6.56 -2.39 -0.02 1.78 16 6 C 0.05 0.83 6.27 72.49 0.45 1.28 16 7 O -0.39 -9.73 10.62 -148.98 -1.58 -11.31 16 8 C 0.01 0.30 6.22 72.48 0.45 0.75 16 9 C 0.05 1.26 2.33 45.93 0.11 1.36 16 10 H 0.10 2.31 6.32 -2.39 -0.02 2.29 16 11 N -0.53 -15.44 4.73 -891.11 -4.22 -19.65 16 12 C 0.03 0.75 8.27 127.69 1.06 1.80 16 13 C 0.07 2.31 4.62 86.30 0.40 2.71 16 14 C -0.09 -3.77 5.08 30.59 0.16 -3.61 16 15 C 0.03 1.42 4.97 29.85 0.15 1.57 16 16 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 18 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 19 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 20 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 24 H 0.06 0.65 7.45 -2.39 -0.02 0.63 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.98 6.52 -2.39 -0.02 0.96 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.08 7.83 -2.38 -0.02 1.06 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 2.06 5.85 -2.39 -0.01 2.05 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.93 6.43 -2.38 -0.02 1.92 16 36 H 0.06 1.84 6.30 -2.39 -0.02 1.83 16 37 H 0.03 0.75 6.21 -2.39 -0.01 0.74 16 38 H 0.07 2.42 7.99 -2.39 -0.02 2.40 16 39 H 0.02 0.88 6.84 -2.39 -0.02 0.86 16 40 H 0.05 2.04 6.47 -2.39 -0.02 2.02 16 41 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 44 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -64.79 332.05 2.17 -62.62 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.94 Total: 10.05 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 4.72 Total: -31.35 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -3.93 Total: -77.00 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.58 Total: -11.31 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.79 2.17 -62.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688179037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.736 kcal (2) G-P(sol) polarization free energy of solvation -64.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds