Wall clock time and date at job start Mon Mar 30 2020 06:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 C 1.52992 * 109.47445 * 120.00287 * 2 1 3 5 5 H 1.09007 * 110.56353 * 50.48924 * 4 2 1 6 6 C 1.54483 * 110.50997 * 287.82179 * 4 2 1 7 7 O 1.44422 * 104.79987 * 217.37439 * 6 4 2 8 8 C 1.44422 * 105.28150 * 40.50930 * 7 6 4 9 9 C 1.54482 * 104.80063 * 319.48814 * 8 7 6 10 10 H 1.08995 * 110.51267 * 265.33284 * 9 8 7 11 11 N 1.46904 * 110.62878 * 142.67645 * 9 8 7 12 12 C 1.46899 * 110.99943 * 39.64388 * 11 9 8 13 13 C 1.46904 * 110.99763 * 163.59779 * 11 9 8 14 14 C 1.53001 * 109.46821 * 170.00427 * 13 11 9 15 15 C 1.52998 * 109.46956 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47199 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99744 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00093 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00197 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00180 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46982 * 59.99946 * 20 18 16 22 22 H 1.48496 * 109.47215 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46887 * 300.00335 * 20 18 16 24 24 H 1.08999 * 109.47215 * 305.01115 * 1 2 3 25 25 H 1.09003 * 109.47191 * 65.00989 * 1 2 3 26 26 H 1.08999 * 109.47141 * 185.00585 * 1 2 3 27 27 H 1.09000 * 109.47074 * 240.00163 * 2 1 3 28 28 H 1.09004 * 109.46595 * 170.99507 * 3 2 1 29 29 H 1.08999 * 109.47361 * 290.99304 * 3 2 1 30 30 H 1.08993 * 109.47142 * 51.00046 * 3 2 1 31 31 H 1.09001 * 110.36746 * 336.20077 * 6 4 2 32 32 H 1.08996 * 110.37596 * 98.54040 * 6 4 2 33 33 H 1.08997 * 110.37960 * 200.65802 * 8 7 6 34 34 H 1.08999 * 110.37522 * 78.31632 * 8 7 6 35 35 H 1.09000 * 109.47058 * 62.55235 * 12 11 9 36 36 H 1.08996 * 109.46975 * 182.54965 * 12 11 9 37 37 H 1.09000 * 109.46824 * 302.55313 * 12 11 9 38 38 H 1.09004 * 109.46774 * 290.00146 * 13 11 9 39 39 H 1.09004 * 109.47013 * 49.99901 * 13 11 9 40 40 H 1.09003 * 109.46493 * 299.99615 * 14 13 11 41 41 H 1.08991 * 109.47168 * 59.99834 * 14 13 11 42 42 H 1.09010 * 109.46828 * 299.99373 * 15 14 13 43 43 H 1.09000 * 109.47627 * 59.99254 * 15 14 13 44 44 H 0.97000 * 120.00115 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5555 -1.6919 1.3555 6 6 1.8030 0.1426 2.5077 7 8 2.9658 -0.0825 3.3341 8 6 4.0841 -0.1020 2.4204 9 6 3.5752 -0.8860 1.1904 10 1 3.8497 -1.9380 1.2677 11 7 4.1080 -0.3060 -0.0497 12 6 5.5092 0.1014 0.1193 13 6 3.9635 -1.2417 -1.1729 14 6 4.2937 -0.5218 -2.4820 15 6 4.1426 -1.4961 -3.6519 16 6 4.4672 -0.7869 -4.9414 17 1 4.7523 0.2547 -4.9278 18 6 4.4002 -1.4677 -6.1384 19 7 4.0525 -2.7360 -6.1550 20 14 4.8018 -0.5885 -7.7369 21 1 6.1983 -0.0856 -7.6878 22 1 4.6553 -1.5342 -8.8724 23 1 3.8707 0.5536 -7.9211 24 1 -0.3633 0.5896 0.8417 25 1 -0.3634 0.4342 -0.9315 26 1 -0.3633 -1.0237 0.0897 27 1 1.8933 -0.5138 -0.8900 28 1 3.1180 1.4467 0.1609 29 1 1.8139 1.9078 -0.9594 30 1 1.5513 2.0006 0.7986 31 1 1.7284 1.1957 2.2364 32 1 0.9006 -0.1814 3.0260 33 1 4.9340 -0.6140 2.8716 34 1 4.3594 0.9135 2.1358 35 1 6.1182 -0.7750 0.3406 36 1 5.8650 0.5685 -0.7991 37 1 5.5840 0.8130 0.9415 38 1 4.6464 -2.0804 -1.0372 39 1 2.9382 -1.6101 -1.2093 40 1 3.6108 0.3169 -2.6176 41 1 5.3188 -0.1534 -2.4455 42 1 4.8252 -2.3351 -3.5165 43 1 3.1173 -1.8642 -3.6882 44 1 4.0057 -3.2151 -6.9971 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688179041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:49 Heat of formation + Delta-G solvation = -42.683834 kcal Electronic energy + Delta-G solvation = -20443.759319 eV Core-core repulsion = 17589.263965 eV Total energy + Delta-G solvation = -2854.495355 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44567 -36.95894 -35.22008 -33.66909 -31.60123 -29.54723 -28.28209 -27.19616 -26.89418 -25.25171 -23.23229 -22.46388 -20.57508 -19.90578 -18.88798 -16.72449 -16.28752 -16.07969 -15.90887 -15.04917 -14.60584 -14.41325 -13.87062 -13.67237 -13.56249 -13.25620 -12.70593 -12.28425 -12.26748 -12.07467 -11.77258 -11.72218 -11.53819 -11.31114 -11.13648 -10.89989 -10.78521 -10.73043 -10.53352 -10.41023 -10.38664 -10.05335 -9.64164 -9.45759 -9.32243 -9.05951 -8.33689 -7.97586 -5.99169 -4.01296 3.33685 3.38067 3.40559 3.80278 4.19005 4.47223 4.53895 4.75695 4.89175 5.09208 5.23294 5.29556 5.36566 5.38880 5.42750 5.48716 5.56055 5.65860 5.70252 5.71259 5.79024 5.84483 5.96315 5.97261 6.08987 6.11594 6.15947 6.27716 6.29873 6.47763 6.62382 6.67102 6.69757 6.85567 6.89919 7.10597 7.30939 7.35440 7.68488 7.83208 8.01046 8.44230 9.05710 9.62739 11.12212 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.004692 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.834037 B = 5966.003593 C = 6344.283312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C -0.147 4.147 4 C -0.107 4.107 5 H 0.076 0.924 6 C 0.044 3.956 7 O -0.380 6.380 8 C 0.047 3.953 9 C 0.050 3.950 10 H 0.055 0.945 11 N -0.521 5.521 12 C 0.012 3.988 13 C 0.049 3.951 14 C -0.103 4.103 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.023 0.977 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 5.404 16.471 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 C -0.204 4.204 4 C -0.126 4.126 5 H 0.095 0.905 6 C -0.032 4.032 7 O -0.299 6.299 8 C -0.030 4.030 9 C -0.059 4.059 10 H 0.073 0.927 11 N -0.246 5.246 12 C -0.136 4.136 13 C -0.077 4.077 14 C -0.141 4.141 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.308 5.639 16.491 17.739 hybrid contribution 0.639 -0.465 -1.036 1.303 sum -2.670 5.174 15.455 16.515 Atomic orbital electron populations 1.21934 0.96380 1.01076 1.01406 1.21089 0.93774 0.97519 0.97739 1.22092 1.03897 0.94477 0.99931 1.22578 0.94572 0.99386 0.96062 0.90539 1.23704 0.88978 1.00108 0.90443 1.89082 1.16365 1.93711 1.30694 1.23665 0.90020 1.00305 0.88967 1.23035 0.95198 0.97327 0.90335 0.92725 1.62394 1.17967 1.40908 1.03299 1.22562 0.88498 0.99754 1.02818 1.22517 1.01014 0.93274 0.90920 1.21645 1.00186 0.99563 0.92729 1.19063 0.97005 0.94070 0.91384 1.21198 1.45923 0.96959 0.91583 0.92769 1.25016 0.95389 0.94855 0.99160 1.69953 1.48396 1.08782 1.26475 0.86676 0.78919 0.79436 0.83073 1.20285 1.21324 1.20230 0.93422 0.92620 0.93224 0.88849 0.89173 0.93544 0.94614 0.90942 0.89824 0.89595 0.91006 0.95820 0.90319 0.91579 0.95325 0.90509 0.92502 0.93417 0.96944 0.96694 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.02 37.16 0.34 -1.38 16 2 C -0.08 -1.05 2.22 -90.63 -0.20 -1.25 16 3 C -0.15 -1.85 8.07 37.16 0.30 -1.55 16 4 C -0.11 -1.27 2.79 -89.05 -0.25 -1.52 16 5 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 6 C 0.04 0.49 6.50 37.94 0.25 0.74 16 7 O -0.38 -4.87 11.65 -35.23 -0.41 -5.28 16 8 C 0.05 0.54 6.03 37.94 0.23 0.77 16 9 C 0.05 0.62 2.69 -66.14 -0.18 0.44 16 10 H 0.05 0.71 7.99 -51.93 -0.41 0.30 16 11 N -0.52 -7.04 1.29 -232.99 -0.30 -7.35 16 12 C 0.01 0.14 8.72 60.06 0.52 0.67 16 13 C 0.05 0.81 3.90 -3.82 -0.01 0.80 16 14 C -0.10 -2.06 5.08 -26.73 -0.14 -2.19 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.05 0.48 7.82 -51.93 -0.41 0.07 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.41 4.52 -51.93 -0.23 1.17 16 28 H 0.09 1.19 5.53 -51.93 -0.29 0.91 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.40 6.22 -51.93 -0.32 0.08 16 31 H 0.07 0.79 5.27 -51.93 -0.27 0.52 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.79 6.35 -51.93 -0.33 0.46 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 1.05 6.41 -51.93 -0.33 0.72 16 37 H 0.07 0.69 5.79 -51.93 -0.30 0.39 16 38 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.08 1.29 5.72 -51.93 -0.30 0.99 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.94 6.52 -51.93 -0.34 0.60 16 42 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -29.36 325.37 -7.52 -36.88 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.73 Total: -2.16 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 0.31 Total: -17.42 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.43 Total: -33.56 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.41 Total: -5.28 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.36 -7.52 -36.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688179041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.805 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds