Wall clock time and date at job start Mon Mar 30 2020 06:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 C 1.52992 * 109.47445 * 120.00287 * 2 1 3 5 5 H 1.09007 * 110.56353 * 50.48924 * 4 2 1 6 6 C 1.54483 * 110.50997 * 287.82179 * 4 2 1 7 7 O 1.44422 * 104.79987 * 217.37439 * 6 4 2 8 8 C 1.44422 * 105.28150 * 40.50930 * 7 6 4 9 9 C 1.54482 * 104.80063 * 319.48814 * 8 7 6 10 10 H 1.08995 * 110.51267 * 265.33284 * 9 8 7 11 11 N 1.46904 * 110.62878 * 142.67645 * 9 8 7 12 12 C 1.46899 * 110.99943 * 39.64388 * 11 9 8 13 13 C 1.46904 * 110.99763 * 163.59779 * 11 9 8 14 14 C 1.53001 * 109.46821 * 170.00427 * 13 11 9 15 15 C 1.52998 * 109.46956 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47199 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99744 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00093 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00197 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00180 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46982 * 59.99946 * 20 18 16 22 22 H 1.48496 * 109.47215 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46887 * 300.00335 * 20 18 16 24 24 H 1.08999 * 109.47215 * 305.01115 * 1 2 3 25 25 H 1.09003 * 109.47191 * 65.00989 * 1 2 3 26 26 H 1.08999 * 109.47141 * 185.00585 * 1 2 3 27 27 H 1.09000 * 109.47074 * 240.00163 * 2 1 3 28 28 H 1.09004 * 109.46595 * 170.99507 * 3 2 1 29 29 H 1.08999 * 109.47361 * 290.99304 * 3 2 1 30 30 H 1.08993 * 109.47142 * 51.00046 * 3 2 1 31 31 H 1.09001 * 110.36746 * 336.20077 * 6 4 2 32 32 H 1.08996 * 110.37596 * 98.54040 * 6 4 2 33 33 H 1.08997 * 110.37960 * 200.65802 * 8 7 6 34 34 H 1.08999 * 110.37522 * 78.31632 * 8 7 6 35 35 H 1.09000 * 109.47058 * 62.55235 * 12 11 9 36 36 H 1.08996 * 109.46975 * 182.54965 * 12 11 9 37 37 H 1.09000 * 109.46824 * 302.55313 * 12 11 9 38 38 H 1.09004 * 109.46774 * 290.00146 * 13 11 9 39 39 H 1.09004 * 109.47013 * 49.99901 * 13 11 9 40 40 H 1.09003 * 109.46493 * 299.99615 * 14 13 11 41 41 H 1.08991 * 109.47168 * 59.99834 * 14 13 11 42 42 H 1.09010 * 109.46828 * 299.99373 * 15 14 13 43 43 H 1.09000 * 109.47627 * 59.99254 * 15 14 13 44 44 H 0.97000 * 120.00115 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5555 -1.6919 1.3555 6 6 1.8030 0.1426 2.5077 7 8 2.9658 -0.0825 3.3341 8 6 4.0841 -0.1020 2.4204 9 6 3.5752 -0.8860 1.1904 10 1 3.8497 -1.9380 1.2677 11 7 4.1080 -0.3060 -0.0497 12 6 5.5092 0.1014 0.1193 13 6 3.9635 -1.2417 -1.1729 14 6 4.2937 -0.5218 -2.4820 15 6 4.1426 -1.4961 -3.6519 16 6 4.4672 -0.7869 -4.9414 17 1 4.7523 0.2547 -4.9278 18 6 4.4002 -1.4677 -6.1384 19 7 4.0525 -2.7360 -6.1550 20 14 4.8018 -0.5885 -7.7369 21 1 6.1983 -0.0856 -7.6878 22 1 4.6553 -1.5342 -8.8724 23 1 3.8707 0.5536 -7.9211 24 1 -0.3633 0.5896 0.8417 25 1 -0.3634 0.4342 -0.9315 26 1 -0.3633 -1.0237 0.0897 27 1 1.8933 -0.5138 -0.8900 28 1 3.1180 1.4467 0.1609 29 1 1.8139 1.9078 -0.9594 30 1 1.5513 2.0006 0.7986 31 1 1.7284 1.1957 2.2364 32 1 0.9006 -0.1814 3.0260 33 1 4.9340 -0.6140 2.8716 34 1 4.3594 0.9135 2.1358 35 1 6.1182 -0.7750 0.3406 36 1 5.8650 0.5685 -0.7991 37 1 5.5840 0.8130 0.9415 38 1 4.6464 -2.0804 -1.0372 39 1 2.9382 -1.6101 -1.2093 40 1 3.6108 0.3169 -2.6176 41 1 5.3188 -0.1534 -2.4455 42 1 4.8252 -2.3351 -3.5165 43 1 3.1173 -1.8642 -3.6882 44 1 4.0057 -3.2151 -6.9971 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688179041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:49 Heat of formation + Delta-G solvation = -58.525027 kcal Electronic energy + Delta-G solvation = -20444.446245 eV Core-core repulsion = 17589.263965 eV Total energy + Delta-G solvation = -2855.182280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44189 -38.12647 -36.25867 -35.57013 -33.41265 -30.67557 -29.48098 -28.43533 -27.86567 -26.83722 -24.17752 -24.14026 -21.87270 -21.34637 -19.90913 -18.47403 -17.63533 -17.12673 -16.94150 -16.53297 -16.19078 -15.67698 -15.00058 -14.90280 -14.80513 -14.30622 -14.16547 -13.75543 -13.62220 -13.29449 -13.11340 -12.86750 -12.73213 -12.64447 -12.50724 -12.49550 -12.24341 -12.13807 -11.86172 -11.51116 -11.46003 -11.39042 -11.31707 -11.13099 -10.88929 -10.53535 -10.46680 -9.10205 -8.19240 -6.30027 1.40158 1.43029 1.50917 2.41174 2.78574 3.14091 3.17933 3.58653 3.82618 3.93404 4.11390 4.16412 4.27417 4.34719 4.38396 4.47997 4.55543 4.59584 4.66895 4.73450 4.74707 4.82625 4.86987 4.90597 4.98744 5.00151 5.07330 5.10097 5.18424 5.21628 5.28717 5.33406 5.48610 5.53079 5.67841 5.75906 5.77119 5.88261 5.88512 6.08702 6.20850 6.28851 6.86910 7.39254 8.92447 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.004692 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.834037 B = 5966.003593 C = 6344.283312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.105 4.105 5 H 0.076 0.924 6 C 0.047 3.953 7 O -0.394 6.394 8 C 0.052 3.948 9 C 0.048 3.952 10 H 0.049 0.951 11 N -0.516 5.516 12 C 0.010 3.990 13 C 0.064 3.936 14 C -0.085 4.085 15 C 0.027 3.973 16 C -0.541 4.541 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.020 0.980 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.051 0.949 42 H -0.013 1.013 43 H -0.010 1.010 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 6.850 17.415 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.199 4.199 4 C -0.125 4.125 5 H 0.095 0.905 6 C -0.029 4.029 7 O -0.312 6.312 8 C -0.025 4.025 9 C -0.061 4.061 10 H 0.067 0.933 11 N -0.241 5.241 12 C -0.138 4.138 13 C -0.063 4.063 14 C -0.123 4.123 15 C -0.011 4.011 16 C -0.579 4.579 17 H 0.077 0.923 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.787 3.213 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.192 1.192 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.038 0.962 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.005 0.995 43 H 0.008 0.992 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.184 7.099 17.452 19.108 hybrid contribution 0.589 -0.938 -1.301 1.709 sum -2.595 6.160 16.151 17.480 Atomic orbital electron populations 1.21904 0.95357 1.01527 1.01741 1.21000 0.94680 0.97351 0.96944 1.22036 1.03647 0.94438 0.99791 1.22559 0.94151 0.99580 0.96162 0.90521 1.23752 0.89150 1.00147 0.89832 1.89077 1.17027 1.93783 1.31323 1.23696 0.90068 1.00597 0.88120 1.23080 0.95676 0.97214 0.90114 0.93340 1.62325 1.18995 1.39723 1.03044 1.22630 0.87559 1.00333 1.03264 1.22195 1.00469 0.93020 0.90645 1.21347 1.00291 0.98136 0.92482 1.18958 0.94608 0.94309 0.93213 1.21649 1.45914 0.97414 0.92887 0.92276 1.25959 0.95057 0.95587 1.03133 1.70090 1.49367 1.10441 1.27553 0.85538 0.79192 0.78339 0.78215 1.19155 1.20878 1.19200 0.91678 0.93410 0.93011 0.91664 0.89736 0.94896 0.92929 0.90422 0.88362 0.88267 0.90249 0.95610 0.91439 0.89019 0.96215 0.90951 0.92779 0.93065 0.99488 0.99197 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.02 71.98 0.65 -2.54 16 2 C -0.08 -1.99 2.22 -10.80 -0.02 -2.01 16 3 C -0.14 -3.38 8.07 71.98 0.58 -2.80 16 4 C -0.11 -2.35 2.79 -9.78 -0.03 -2.38 16 5 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 6 C 0.05 0.94 6.50 72.49 0.47 1.41 16 7 O -0.39 -9.06 11.65 -148.98 -1.74 -10.80 16 8 C 0.05 1.05 6.03 72.49 0.44 1.49 16 9 C 0.05 1.13 2.69 45.93 0.12 1.25 16 10 H 0.05 1.21 7.99 -2.39 -0.02 1.19 16 11 N -0.52 -13.52 1.29 -891.05 -1.15 -14.67 16 12 C 0.01 0.22 8.72 127.69 1.11 1.34 16 13 C 0.06 2.14 3.90 86.30 0.34 2.48 16 14 C -0.08 -3.44 5.08 30.59 0.16 -3.28 16 15 C 0.03 1.41 4.97 29.85 0.15 1.56 16 16 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.00 0.01 5.46 84.65 0.46 0.48 16 19 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 20 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H 0.06 1.17 7.82 -2.39 -0.02 1.15 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.99 4.52 -2.39 -0.01 1.98 16 28 H 0.08 2.10 5.53 -2.38 -0.01 2.09 16 29 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 1.06 6.22 -2.39 -0.01 1.05 16 31 H 0.08 1.47 5.27 -2.39 -0.01 1.46 16 32 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.50 6.35 -2.39 -0.02 1.48 16 35 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 1.73 6.41 -2.39 -0.02 1.71 16 37 H 0.09 1.66 5.79 -2.39 -0.01 1.65 16 38 H 0.02 0.69 8.12 -2.38 -0.02 0.67 16 39 H 0.07 2.50 5.72 -2.39 -0.01 2.49 16 40 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 2.03 6.52 -2.39 -0.02 2.01 16 42 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 43 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -63.09 325.37 5.03 -58.06 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.95 Total: 11.65 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 4.66 Total: -33.71 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -0.87 Total: -71.64 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.74 Total: -10.80 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -63.09 5.03 -58.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688179041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.463 kcal (2) G-P(sol) polarization free energy of solvation -63.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds