Wall clock time and date at job start Mon Mar 30 2020 06:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47348 * 2 1 4 4 C 1.52995 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.45443 * 53.53516 * 4 3 2 6 6 C 1.54473 * 110.51721 * 290.77799 * 4 3 2 7 7 O 1.44422 * 104.80299 * 217.37857 * 6 4 3 8 8 C 1.44419 * 105.27872 * 40.50982 * 7 6 4 9 9 C 1.54481 * 104.80260 * 319.48914 * 8 7 6 10 10 H 1.08998 * 110.62941 * 265.27464 * 9 8 7 11 11 N 1.46899 * 110.51141 * 142.62422 * 9 8 7 12 12 C 1.46904 * 111.00188 * 39.79520 * 11 9 8 13 13 C 1.46902 * 110.99918 * 163.75124 * 11 9 8 14 14 H 1.09000 * 109.47165 * 48.80620 * 13 11 9 15 15 C 1.50698 * 109.46900 * 288.79960 * 13 11 9 16 16 H 1.07998 * 120.00014 * 0.02562 * 15 13 11 17 17 C 1.37879 * 119.99852 * 179.97438 * 15 13 11 18 18 N 1.31521 * 119.99940 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00093 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47280 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47300 * 119.99959 * 19 17 15 22 22 H 1.48504 * 109.46770 * 240.00047 * 19 17 15 23 23 C 1.53008 * 109.46953 * 168.80365 * 13 11 9 24 24 C 1.52999 * 109.46896 * 294.37805 * 23 13 11 25 25 H 1.08991 * 109.47604 * 59.98948 * 1 2 3 26 26 H 1.08999 * 109.47416 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46520 * 299.99206 * 1 2 3 28 28 H 1.09004 * 109.46520 * 240.00794 * 2 1 3 29 29 H 1.09002 * 109.47387 * 120.00608 * 2 1 3 30 30 H 1.09004 * 109.46662 * 60.00881 * 3 2 1 31 31 H 1.09000 * 109.47536 * 300.01142 * 3 2 1 32 32 H 1.08998 * 110.37274 * 336.20379 * 6 4 3 33 33 H 1.08997 * 110.37541 * 98.54588 * 6 4 3 34 34 H 1.08999 * 110.37552 * 200.65885 * 8 7 6 35 35 H 1.08999 * 110.47069 * 78.36685 * 8 7 6 36 36 H 1.09003 * 109.46871 * 58.93591 * 12 11 9 37 37 H 1.09000 * 109.47139 * 178.93467 * 12 11 9 38 38 H 1.09000 * 109.46765 * 298.93610 * 12 11 9 39 39 H 0.97004 * 119.99765 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.47105 * 54.38093 * 23 13 11 41 41 H 1.08999 * 109.46895 * 174.38188 * 23 13 11 42 42 H 1.09001 * 109.46865 * 183.99005 * 24 23 13 43 43 H 1.08997 * 109.47402 * 303.99209 * 24 23 13 44 44 H 1.09006 * 109.47063 * 63.99595 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9513 0.8353 -0.8205 6 6 4.1108 0.9294 1.3536 7 8 5.2793 1.7372 1.6142 8 6 4.9154 3.0747 1.2087 9 6 4.1115 2.8862 -0.0970 10 1 4.7603 2.9929 -0.9663 11 7 3.0033 3.8483 -0.1625 12 6 3.4180 5.1643 0.3416 13 6 2.4752 3.9507 -1.5295 14 1 2.2959 2.9512 -1.9256 15 6 3.4749 4.6650 -2.4020 16 1 4.4093 5.0082 -1.9830 17 6 3.1972 4.8795 -3.7353 18 7 2.0595 4.4612 -4.2457 19 14 4.4367 5.7644 -4.8170 20 1 5.6270 6.1308 -4.0082 21 1 4.8494 4.8714 -5.9295 22 1 3.8188 6.9949 -5.3732 23 6 1.1617 4.7353 -1.5114 24 6 0.1042 3.9415 -0.7417 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5137 0.8901 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6766 1.9565 -0.8899 32 1 3.3679 1.0727 2.1382 33 1 4.3860 -0.1226 1.2780 34 1 5.8085 3.6708 1.0216 35 1 4.2963 3.5488 1.9703 36 1 4.2562 5.5324 -0.2501 37 1 2.5843 5.8622 0.2642 38 1 3.7212 5.0746 1.3848 39 1 1.8640 4.6124 -5.1837 40 1 1.3199 5.6974 -1.0241 41 1 0.8213 4.8975 -2.5341 42 1 -0.8499 4.4664 -0.7890 43 1 -0.0029 2.9523 -1.1867 44 1 0.4119 3.8403 0.2991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688224594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:23 Heat of formation + Delta-G solvation = -48.028223 kcal Electronic energy + Delta-G solvation = -21280.405182 eV Core-core repulsion = 18425.678077 eV Total energy + Delta-G solvation = -2854.727105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64147 -36.68636 -34.77980 -32.92526 -31.43508 -30.44575 -28.00816 -26.71727 -25.44957 -25.00337 -22.81932 -21.83851 -20.81918 -19.31016 -18.72588 -16.51719 -16.05296 -15.73786 -15.13873 -14.87778 -14.27781 -13.95311 -13.51192 -13.20386 -13.00512 -12.77576 -12.43920 -12.22535 -12.05887 -11.71771 -11.57274 -11.40519 -11.12200 -10.86691 -10.81897 -10.79436 -10.58467 -10.44852 -10.24344 -10.15114 -9.92959 -9.81283 -9.60028 -9.38956 -9.22014 -8.95926 -8.33036 -7.13534 -6.02223 -4.14896 3.23046 3.32241 3.35120 4.35159 4.36872 5.03423 5.09463 5.21435 5.27843 5.33222 5.45660 5.55777 5.66276 5.72519 5.85060 6.03400 6.09184 6.12454 6.14839 6.18096 6.27035 6.31300 6.39961 6.41825 6.44645 6.51756 6.54201 6.65474 6.72430 6.76783 6.93471 7.01192 7.12771 7.15147 7.21612 7.34794 7.61559 7.73902 7.94229 8.12240 8.29361 8.44252 8.94895 9.52415 10.96756 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.008416 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.191330 B = 3326.260720 C = 4007.229113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.106 4.106 4 C -0.108 4.108 5 H 0.072 0.928 6 C 0.053 3.947 7 O -0.386 6.386 8 C 0.046 3.954 9 C 0.059 3.941 10 H 0.065 0.935 11 N -0.524 5.524 12 C 0.026 3.974 13 C 0.209 3.791 14 H 0.048 0.952 15 C -0.544 4.544 16 H 0.057 0.943 17 C 0.069 3.931 18 N -0.884 5.884 19 Si 0.885 3.115 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.111 4.111 24 C -0.139 4.139 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.260 0.740 40 H 0.032 0.968 41 H 0.092 0.908 42 H 0.023 0.977 43 H 0.042 0.958 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 -5.016 8.528 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.144 4.144 4 C -0.127 4.127 5 H 0.091 0.909 6 C -0.024 4.024 7 O -0.305 6.305 8 C -0.031 4.031 9 C -0.050 4.050 10 H 0.083 0.917 11 N -0.248 5.248 12 C -0.122 4.122 13 C 0.103 3.897 14 H 0.066 0.934 15 C -0.583 4.583 16 H 0.075 0.925 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.713 3.287 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.150 4.150 24 C -0.196 4.196 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.988 -5.268 8.753 10.263 hybrid contribution 1.169 0.933 -1.418 2.061 sum 0.181 -4.335 7.335 8.522 Atomic orbital electron populations 1.21737 0.96313 1.00569 1.01993 1.21643 0.95646 0.98466 1.00834 1.21808 0.92914 0.94645 1.04985 1.22471 0.97411 0.96030 0.96810 0.90944 1.23484 0.87510 0.95145 0.96217 1.89035 1.35830 1.19826 1.85760 1.23686 0.98814 0.84557 0.96037 1.22849 0.92682 0.92699 0.96807 0.91699 1.62634 1.29137 1.06798 1.26251 1.22299 1.00312 0.92302 0.97328 1.19449 0.91803 0.96450 0.81960 0.93411 1.21794 1.03634 1.38119 0.94711 0.92522 1.24892 0.95146 0.95418 0.97913 1.69879 1.22497 1.46343 1.13519 0.86653 0.81696 0.79599 0.80733 1.20000 1.21058 1.21017 1.21604 0.95181 0.96845 1.01335 1.21803 0.97711 0.99697 1.00379 0.92493 0.93689 0.93010 0.92693 0.93132 0.91441 0.88642 0.92546 0.90202 0.90048 0.91601 0.95132 0.91860 0.93830 0.92961 0.94931 0.89020 0.95778 0.93899 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.13 -1.77 5.80 -26.73 -0.16 -1.92 16 3 C -0.11 -1.72 3.22 -26.73 -0.09 -1.81 16 4 C -0.11 -1.80 2.99 -89.06 -0.27 -2.07 16 5 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 6 C 0.05 0.80 6.46 37.93 0.24 1.04 16 7 O -0.39 -6.59 11.65 -35.23 -0.41 -7.00 16 8 C 0.05 0.76 6.07 37.93 0.23 0.99 16 9 C 0.06 1.10 2.82 -66.14 -0.19 0.92 16 10 H 0.07 1.39 7.08 -51.93 -0.37 1.03 16 11 N -0.52 -10.19 2.94 -226.41 -0.67 -10.86 16 12 C 0.03 0.48 8.24 60.07 0.49 0.98 16 13 C 0.21 4.78 0.98 -68.86 -0.07 4.71 16 14 H 0.05 1.21 5.69 -51.93 -0.30 0.91 16 15 C -0.54 -13.93 6.93 -34.44 -0.24 -14.17 16 16 H 0.06 1.48 6.04 -52.49 -0.32 1.16 16 17 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 18 N -0.88 -24.08 11.29 55.43 0.63 -23.45 16 19 Si 0.88 20.80 29.54 -169.99 -5.02 15.77 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 C -0.11 -2.50 5.20 -26.73 -0.14 -2.64 16 24 C -0.14 -2.65 8.86 37.16 0.33 -2.32 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.63 7.59 -51.93 -0.39 0.24 16 30 H 0.07 1.12 7.65 -51.93 -0.40 0.72 16 31 H 0.10 1.82 2.87 -51.93 -0.15 1.67 16 32 H 0.06 0.81 7.76 -51.93 -0.40 0.40 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.05 6.37 -51.93 -0.33 0.72 16 36 H 0.03 0.61 6.27 -51.93 -0.33 0.28 16 37 H 0.06 1.20 6.21 -51.93 -0.32 0.88 16 38 H 0.04 0.70 5.95 -51.93 -0.31 0.39 16 39 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.03 0.72 6.27 -51.93 -0.33 0.40 16 41 H 0.09 2.34 5.94 -51.93 -0.31 2.03 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.04 0.82 7.00 -51.93 -0.36 0.45 16 44 H 0.05 0.87 7.68 -51.93 -0.40 0.47 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -26.15 319.34 -7.75 -33.90 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.52 Total: 2.94 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 0.43 Total: -16.11 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: -0.04 Total: -34.31 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.41 Total: -7.00 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.15 -7.75 -33.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688224594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.129 kcal (2) G-P(sol) polarization free energy of solvation -26.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds