Wall clock time and date at job start Mon Mar 30 2020 06:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47348 * 2 1 4 4 C 1.52995 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.45443 * 53.53516 * 4 3 2 6 6 C 1.54473 * 110.51721 * 290.77799 * 4 3 2 7 7 O 1.44422 * 104.80299 * 217.37857 * 6 4 3 8 8 C 1.44419 * 105.27872 * 40.50982 * 7 6 4 9 9 C 1.54481 * 104.80260 * 319.48914 * 8 7 6 10 10 H 1.08998 * 110.62941 * 265.27464 * 9 8 7 11 11 N 1.46899 * 110.51141 * 142.62422 * 9 8 7 12 12 C 1.46904 * 111.00188 * 39.79520 * 11 9 8 13 13 C 1.46902 * 110.99918 * 163.75124 * 11 9 8 14 14 H 1.09000 * 109.47165 * 48.80620 * 13 11 9 15 15 C 1.50698 * 109.46900 * 288.79960 * 13 11 9 16 16 H 1.07998 * 120.00014 * 0.02562 * 15 13 11 17 17 C 1.37879 * 119.99852 * 179.97438 * 15 13 11 18 18 N 1.31521 * 119.99940 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00093 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47280 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47300 * 119.99959 * 19 17 15 22 22 H 1.48504 * 109.46770 * 240.00047 * 19 17 15 23 23 C 1.53008 * 109.46953 * 168.80365 * 13 11 9 24 24 C 1.52999 * 109.46896 * 294.37805 * 23 13 11 25 25 H 1.08991 * 109.47604 * 59.98948 * 1 2 3 26 26 H 1.08999 * 109.47416 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46520 * 299.99206 * 1 2 3 28 28 H 1.09004 * 109.46520 * 240.00794 * 2 1 3 29 29 H 1.09002 * 109.47387 * 120.00608 * 2 1 3 30 30 H 1.09004 * 109.46662 * 60.00881 * 3 2 1 31 31 H 1.09000 * 109.47536 * 300.01142 * 3 2 1 32 32 H 1.08998 * 110.37274 * 336.20379 * 6 4 3 33 33 H 1.08997 * 110.37541 * 98.54588 * 6 4 3 34 34 H 1.08999 * 110.37552 * 200.65885 * 8 7 6 35 35 H 1.08999 * 110.47069 * 78.36685 * 8 7 6 36 36 H 1.09003 * 109.46871 * 58.93591 * 12 11 9 37 37 H 1.09000 * 109.47139 * 178.93467 * 12 11 9 38 38 H 1.09000 * 109.46765 * 298.93610 * 12 11 9 39 39 H 0.97004 * 119.99765 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.47105 * 54.38093 * 23 13 11 41 41 H 1.08999 * 109.46895 * 174.38188 * 23 13 11 42 42 H 1.09001 * 109.46865 * 183.99005 * 24 23 13 43 43 H 1.08997 * 109.47402 * 303.99209 * 24 23 13 44 44 H 1.09006 * 109.47063 * 63.99595 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9513 0.8353 -0.8205 6 6 4.1108 0.9294 1.3536 7 8 5.2793 1.7372 1.6142 8 6 4.9154 3.0747 1.2087 9 6 4.1115 2.8862 -0.0970 10 1 4.7603 2.9929 -0.9663 11 7 3.0033 3.8483 -0.1625 12 6 3.4180 5.1643 0.3416 13 6 2.4752 3.9507 -1.5295 14 1 2.2959 2.9512 -1.9256 15 6 3.4749 4.6650 -2.4020 16 1 4.4093 5.0082 -1.9830 17 6 3.1972 4.8795 -3.7353 18 7 2.0595 4.4612 -4.2457 19 14 4.4367 5.7644 -4.8170 20 1 5.6270 6.1308 -4.0082 21 1 4.8494 4.8714 -5.9295 22 1 3.8188 6.9949 -5.3732 23 6 1.1617 4.7353 -1.5114 24 6 0.1042 3.9415 -0.7417 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5137 0.8901 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6766 1.9565 -0.8899 32 1 3.3679 1.0727 2.1382 33 1 4.3860 -0.1226 1.2780 34 1 5.8085 3.6708 1.0216 35 1 4.2963 3.5488 1.9703 36 1 4.2562 5.5324 -0.2501 37 1 2.5843 5.8622 0.2642 38 1 3.7212 5.0746 1.3848 39 1 1.8640 4.6124 -5.1837 40 1 1.3199 5.6974 -1.0241 41 1 0.8213 4.8975 -2.5341 42 1 -0.8499 4.4664 -0.7890 43 1 -0.0029 2.9523 -1.1867 44 1 0.4119 3.8403 0.2991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688224594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:23 Heat of formation + Delta-G solvation = -62.183115 kcal Electronic energy + Delta-G solvation = -21281.018984 eV Core-core repulsion = 18425.678077 eV Total energy + Delta-G solvation = -2855.340907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05839 -38.28029 -36.02318 -34.73374 -33.21860 -31.72627 -29.52018 -28.41089 -26.77728 -26.58279 -24.54790 -23.12174 -22.12816 -20.98948 -20.26252 -18.40815 -17.39524 -17.26983 -16.66660 -16.44747 -15.69866 -15.44925 -15.11749 -14.58002 -14.55643 -14.25900 -13.89465 -13.62399 -13.52175 -13.16898 -13.15527 -12.90702 -12.81395 -12.53445 -12.50983 -12.21248 -12.10394 -11.93223 -11.77295 -11.53812 -11.49731 -11.27722 -11.18418 -10.99376 -10.78298 -10.58502 -10.25348 -8.86670 -8.01856 -6.22756 1.32968 1.37358 1.45257 2.39201 3.03832 3.16340 3.49534 3.76548 3.98950 4.02984 4.31831 4.36893 4.43570 4.50225 4.53070 4.56178 4.74398 4.80351 4.80712 4.87207 4.89223 4.92836 4.98008 5.05190 5.09301 5.16986 5.19503 5.21562 5.29070 5.36162 5.46137 5.51002 5.57300 5.61742 5.68976 5.75762 5.81626 5.97832 6.12683 6.23735 6.42546 6.71214 6.99699 7.47087 8.92112 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.008416 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.191330 B = 3326.260720 C = 4007.229113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.096 4.096 4 C -0.108 4.108 5 H 0.060 0.940 6 C 0.059 3.941 7 O -0.396 6.396 8 C 0.055 3.945 9 C 0.053 3.947 10 H 0.028 0.972 11 N -0.511 5.511 12 C 0.028 3.972 13 C 0.221 3.779 14 H 0.023 0.977 15 C -0.551 4.551 16 H 0.047 0.953 17 C 0.024 3.976 18 N -0.907 5.907 19 Si 0.938 3.062 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.281 1.281 23 C -0.106 4.106 24 C -0.123 4.123 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.011 0.989 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.260 0.740 40 H 0.029 0.971 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 -5.665 10.399 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.134 4.134 4 C -0.128 4.128 5 H 0.079 0.921 6 C -0.017 4.017 7 O -0.315 6.315 8 C -0.022 4.022 9 C -0.056 4.056 10 H 0.046 0.954 11 N -0.235 5.235 12 C -0.121 4.121 13 C 0.114 3.886 14 H 0.041 0.959 15 C -0.590 4.590 16 H 0.065 0.935 17 C -0.176 4.176 18 N -0.547 5.547 19 Si 0.765 3.235 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.207 1.207 23 C -0.145 4.145 24 C -0.181 4.181 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.004 -5.917 10.634 12.211 hybrid contribution 1.202 1.120 -1.997 2.586 sum 0.198 -4.797 8.637 9.882 Atomic orbital electron populations 1.21717 0.95559 1.01642 1.01493 1.21603 0.96287 0.96716 1.01559 1.21642 0.92333 0.96108 1.03305 1.22465 0.97882 0.94567 0.97867 0.92136 1.23571 0.87196 0.95903 0.95073 1.89030 1.36844 1.19985 1.85660 1.23605 0.98824 0.84864 0.94880 1.22874 0.92199 0.93810 0.96748 0.95436 1.62603 1.29556 1.07461 1.23900 1.22340 0.99389 0.91561 0.98776 1.19174 0.91633 0.94608 0.83215 0.95947 1.22089 1.03794 1.37762 0.95341 0.93485 1.25517 0.96572 0.96368 0.99166 1.69995 1.23672 1.47391 1.13612 0.85816 0.79853 0.78625 0.79156 1.19966 1.21033 1.20681 1.21443 0.95954 0.97192 0.99892 1.21633 0.97180 0.98980 1.00275 0.94175 0.91857 0.92321 0.93311 0.90986 0.91400 0.91773 0.90978 0.88038 0.89617 0.90215 0.97032 0.92293 0.90604 0.93086 0.95221 0.92289 0.94342 0.94281 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.12 -3.18 5.80 30.60 0.18 -3.00 16 3 C -0.10 -3.02 3.22 30.59 0.10 -2.93 16 4 C -0.11 -3.53 2.99 -9.78 -0.03 -3.56 16 5 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 6 C 0.06 1.60 6.46 72.48 0.47 2.07 16 7 O -0.40 -12.57 11.65 -148.98 -1.74 -14.31 16 8 C 0.06 1.73 6.07 72.49 0.44 2.17 16 9 C 0.05 1.98 2.82 45.93 0.13 2.11 16 10 H 0.03 1.22 7.08 -2.39 -0.02 1.21 16 11 N -0.51 -19.76 2.94 -870.21 -2.56 -22.32 16 12 C 0.03 1.00 8.24 127.69 1.05 2.05 16 13 C 0.22 10.30 0.98 44.17 0.04 10.35 16 14 H 0.02 1.19 5.69 -2.39 -0.01 1.18 16 15 C -0.55 -28.98 6.93 25.60 0.18 -28.80 16 16 H 0.05 2.52 6.04 -2.91 -0.02 2.50 16 17 C 0.02 1.28 5.29 84.65 0.45 1.73 16 18 N -0.91 -50.77 11.29 21.45 0.24 -50.52 16 19 Si 0.94 43.47 29.54 68.60 2.03 45.50 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 C -0.11 -4.83 5.20 30.60 0.16 -4.67 16 24 C -0.12 -4.62 8.86 71.98 0.64 -3.99 16 25 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.07 1.55 7.59 -2.39 -0.02 1.53 16 30 H 0.07 2.10 7.65 -2.38 -0.02 2.08 16 31 H 0.06 2.46 2.87 -2.39 -0.01 2.45 16 32 H 0.07 1.77 7.76 -2.39 -0.02 1.76 16 33 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.08 2.30 6.37 -2.39 -0.02 2.28 16 36 H 0.01 0.45 6.27 -2.39 -0.01 0.43 16 37 H 0.06 2.18 6.21 -2.39 -0.01 2.16 16 38 H 0.08 2.25 5.95 -2.39 -0.01 2.24 16 39 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.03 1.33 6.27 -2.39 -0.01 1.31 16 41 H 0.06 3.09 5.94 -2.39 -0.01 3.08 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.04 1.48 7.00 -2.39 -0.02 1.46 16 44 H 0.06 2.08 7.68 -2.38 -0.02 2.06 16 Total: -1.00 -56.66 319.34 3.45 -53.21 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.96 Total: 17.72 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 4.52 Total: -29.27 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -2.32 Total: -72.84 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -1.74 Total: -14.31 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -56.66 3.45 -53.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688224594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.975 kcal (2) G-P(sol) polarization free energy of solvation -56.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds