Wall clock time and date at job start Mon Mar 30 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47125 * 2 1 4 4 C 1.53001 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.45968 * 52.39226 * 4 3 2 6 6 C 1.54489 * 110.62456 * 289.70515 * 4 3 2 7 7 O 1.44420 * 104.79988 * 265.27792 * 6 4 3 8 8 C 1.44643 * 105.37307 * 319.56459 * 7 6 4 9 9 C 1.54474 * 104.69389 * 40.35139 * 8 7 6 10 10 H 1.09000 * 110.51836 * 94.90047 * 9 8 7 11 11 N 1.46900 * 110.50864 * 217.47615 * 9 8 7 12 12 C 1.46899 * 111.00255 * 307.74407 * 11 9 8 13 13 C 1.46908 * 111.00085 * 183.79333 * 11 9 8 14 14 H 1.09004 * 109.46994 * 323.93739 * 13 11 9 15 15 C 1.50703 * 109.47104 * 203.93771 * 13 11 9 16 16 H 1.08001 * 120.00007 * 0.02562 * 15 13 11 17 17 C 1.37874 * 119.99647 * 179.97438 * 15 13 11 18 18 N 1.31514 * 120.00373 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99595 * 179.72460 * 17 15 13 20 20 H 1.48500 * 109.46874 * 60.00686 * 19 17 15 21 21 H 1.48503 * 109.46697 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47374 * 300.00372 * 19 17 15 23 23 C 1.53002 * 109.47161 * 83.93728 * 13 11 9 24 24 C 1.52995 * 109.47055 * 296.29203 * 23 13 11 25 25 H 1.08999 * 109.47019 * 60.00445 * 1 2 3 26 26 H 1.08995 * 109.47344 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47607 * 300.00740 * 1 2 3 28 28 H 1.08993 * 109.47408 * 239.99665 * 2 1 3 29 29 H 1.08999 * 109.47019 * 119.99555 * 2 1 3 30 30 H 1.08993 * 109.47251 * 59.99569 * 3 2 1 31 31 H 1.08999 * 109.46809 * 299.99683 * 3 2 1 32 32 H 1.08995 * 110.37024 * 24.10956 * 6 4 3 33 33 H 1.08997 * 110.36673 * 146.44966 * 6 4 3 34 34 H 1.08999 * 110.34153 * 281.59433 * 8 7 6 35 35 H 1.09007 * 110.50849 * 159.18430 * 8 7 6 36 36 H 1.08999 * 109.46954 * 303.86252 * 12 11 9 37 37 H 1.08999 * 109.46853 * 63.85904 * 12 11 9 38 38 H 1.09000 * 109.47439 * 183.85687 * 12 11 9 39 39 H 0.96999 * 120.00274 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46834 * 56.29149 * 23 13 11 41 41 H 1.08998 * 109.46756 * 176.28777 * 23 13 11 42 42 H 1.09004 * 109.47172 * 194.71081 * 24 23 13 43 43 H 1.09000 * 109.47073 * 314.70865 * 24 23 13 44 44 H 1.09002 * 109.47269 * 74.70955 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9506 0.8194 -0.8099 6 6 4.1147 0.9548 1.3603 7 8 4.3526 2.1620 2.1165 8 6 4.9183 3.1006 1.1725 9 6 4.1113 2.8842 -0.1268 10 1 3.2889 3.5968 -0.1888 11 7 4.9850 3.0049 -1.3015 12 6 5.7435 4.2625 -1.2665 13 6 4.2128 2.8904 -2.5460 14 1 3.4104 2.1651 -2.4102 15 6 5.1196 2.4337 -3.6596 16 1 6.1649 2.2468 -3.4626 17 6 4.6145 2.2535 -4.9298 18 7 3.3415 2.4806 -5.1697 19 14 5.7402 1.6948 -6.3119 20 1 6.3276 0.3748 -5.9689 21 1 4.9590 1.5766 -7.5693 22 1 6.8285 2.6881 -6.4961 23 6 3.6142 4.2527 -2.9020 24 6 2.6230 4.6738 -1.8152 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.3757 0.3313 1.8633 33 1 5.0453 0.4046 1.2212 34 1 5.9728 2.8807 1.0053 35 1 4.7950 4.1229 1.5299 36 1 5.0522 5.1016 -1.1888 37 1 6.4108 4.2604 -0.4047 38 1 6.3303 4.3584 -2.1801 39 1 2.9861 2.3534 -6.0632 40 1 4.4115 4.9925 -2.9730 41 1 3.0966 4.1832 -3.8587 42 1 2.0099 5.4972 -2.1819 43 1 1.9825 3.8294 -1.5606 44 1 3.1702 4.9949 -0.9290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688224596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:26 Heat of formation + Delta-G solvation = -48.747295 kcal Electronic energy + Delta-G solvation = -21069.832454 eV Core-core repulsion = 18215.074168 eV Total energy + Delta-G solvation = -2854.758286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.73175 -36.92304 -34.95572 -32.82413 -31.08749 -30.49175 -28.49556 -26.86758 -25.74193 -24.85983 -22.93808 -22.10719 -20.24817 -19.76935 -18.79722 -16.50562 -16.30416 -15.65014 -15.20378 -14.66677 -14.55843 -14.08308 -13.71178 -13.45236 -13.10100 -12.80864 -12.41789 -12.35821 -11.83248 -11.75611 -11.61703 -11.47781 -11.16574 -11.03771 -10.94554 -10.82351 -10.79388 -10.50583 -10.34947 -10.08975 -10.06175 -9.95209 -9.75245 -9.61737 -9.31097 -8.90713 -8.33369 -7.05459 -6.00072 -4.03301 3.32375 3.36842 3.39994 4.29941 4.42899 4.84887 5.02888 5.21934 5.25613 5.30387 5.36649 5.40675 5.61900 5.71317 5.74293 5.87839 5.96230 6.00872 6.03234 6.07382 6.10084 6.11563 6.17036 6.24690 6.33411 6.35167 6.37797 6.40396 6.52381 6.61633 6.69129 6.77431 6.84730 6.99670 7.12305 7.24072 7.48859 7.70421 7.86990 8.20228 8.38733 8.59854 9.03428 9.61534 11.06119 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.007668 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.730727 B = 3650.516766 C = 4245.616034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.111 4.111 5 H 0.099 0.901 6 C 0.052 3.948 7 O -0.385 6.385 8 C 0.050 3.950 9 C 0.037 3.963 10 H 0.070 0.930 11 N -0.524 5.524 12 C 0.029 3.971 13 C 0.218 3.782 14 H 0.041 0.959 15 C -0.496 4.496 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.279 1.279 23 C -0.153 4.153 24 C -0.154 4.154 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.020 0.980 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.260 0.740 40 H 0.040 0.960 41 H 0.097 0.903 42 H 0.033 0.967 43 H 0.048 0.952 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 -0.576 9.870 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.147 4.147 4 C -0.130 4.130 5 H 0.117 0.883 6 C -0.024 4.024 7 O -0.303 6.303 8 C -0.027 4.027 9 C -0.072 4.072 10 H 0.088 0.912 11 N -0.249 5.249 12 C -0.120 4.120 13 C 0.111 3.889 14 H 0.059 0.941 15 C -0.535 4.535 16 H 0.079 0.921 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.192 4.192 24 C -0.211 4.211 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.116 0.884 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.957 -0.940 9.961 10.195 hybrid contribution 0.025 0.411 -1.158 1.229 sum -1.932 -0.529 8.802 9.027 Atomic orbital electron populations 1.21759 0.96270 1.01103 1.01677 1.21558 0.95502 0.97263 1.01849 1.21649 0.94460 0.96592 1.02007 1.22522 0.95264 0.97214 0.98044 0.88300 1.23474 0.99554 0.87822 0.91598 1.89051 1.83538 1.24162 1.33584 1.23574 0.97689 0.93039 0.88442 1.23422 0.95706 0.96588 0.91508 0.91229 1.62465 1.26674 1.33394 1.02335 1.22310 0.97365 0.91003 1.01284 1.19357 0.92369 0.92412 0.84712 0.94083 1.21110 0.96030 1.43766 0.92589 0.92119 1.24912 0.95060 0.95735 0.98550 1.69859 1.12420 1.49581 1.21521 0.86623 0.80602 0.79259 0.81265 1.20332 1.21488 1.20439 1.22265 0.97528 0.99161 1.00281 1.22197 0.99750 0.99838 0.99343 0.92612 0.93171 0.93137 0.91655 0.92430 0.92377 0.91242 0.89715 0.92564 0.91619 0.90234 0.96127 0.93800 0.91044 0.93025 0.94140 0.88433 0.94813 0.93325 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.15 0.37 -1.46 16 2 C -0.12 -1.68 5.80 -26.73 -0.16 -1.84 16 3 C -0.11 -1.69 4.42 -26.73 -0.12 -1.80 16 4 C -0.11 -1.87 2.00 -89.04 -0.18 -2.05 16 5 H 0.10 1.91 7.39 -51.93 -0.38 1.52 16 6 C 0.05 0.79 7.05 37.94 0.27 1.06 16 7 O -0.38 -6.38 11.65 -35.23 -0.41 -6.79 16 8 C 0.05 0.80 6.10 37.93 0.23 1.03 16 9 C 0.04 0.65 2.06 -66.15 -0.14 0.52 16 10 H 0.07 1.27 3.48 -51.93 -0.18 1.09 16 11 N -0.52 -10.67 4.37 -226.41 -0.99 -11.66 16 12 C 0.03 0.53 7.67 60.06 0.46 1.00 16 13 C 0.22 5.13 1.64 -68.86 -0.11 5.02 16 14 H 0.04 1.06 6.37 -51.93 -0.33 0.73 16 15 C -0.50 -13.18 8.26 -34.44 -0.28 -13.46 16 16 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 17 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 18 N -0.89 -24.70 11.30 55.43 0.63 -24.08 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.15 -3.48 4.71 -26.73 -0.13 -3.60 16 24 C -0.15 -2.97 8.06 37.16 0.30 -2.67 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.70 6.74 -51.93 -0.35 0.35 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.07 1.20 6.37 -51.93 -0.33 0.87 16 32 H 0.08 1.13 6.49 -51.93 -0.34 0.79 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.07 7.21 -51.93 -0.37 0.69 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.37 5.27 -51.93 -0.27 0.10 16 37 H 0.04 0.71 6.63 -51.93 -0.34 0.36 16 38 H 0.07 1.43 7.52 -51.93 -0.39 1.04 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.04 0.91 6.21 -51.93 -0.32 0.59 16 41 H 0.10 2.53 5.98 -51.93 -0.31 2.22 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.93 6.05 -51.93 -0.31 0.62 16 44 H 0.04 0.72 4.91 -51.93 -0.26 0.47 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -27.00 319.01 -7.99 -34.99 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.42 Total: 3.47 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 0.42 Total: -16.80 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.36 Total: -35.74 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.41 Total: -6.79 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.00 -7.99 -34.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688224596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.756 kcal (2) G-P(sol) polarization free energy of solvation -27.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds