Wall clock time and date at job start Mon Mar 30 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47125 * 2 1 4 4 C 1.53001 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.45968 * 52.39226 * 4 3 2 6 6 C 1.54489 * 110.62456 * 289.70515 * 4 3 2 7 7 O 1.44420 * 104.79988 * 265.27792 * 6 4 3 8 8 C 1.44643 * 105.37307 * 319.56459 * 7 6 4 9 9 C 1.54474 * 104.69389 * 40.35139 * 8 7 6 10 10 H 1.09000 * 110.51836 * 94.90047 * 9 8 7 11 11 N 1.46900 * 110.50864 * 217.47615 * 9 8 7 12 12 C 1.46899 * 111.00255 * 307.74407 * 11 9 8 13 13 C 1.46908 * 111.00085 * 183.79333 * 11 9 8 14 14 H 1.09004 * 109.46994 * 323.93739 * 13 11 9 15 15 C 1.50703 * 109.47104 * 203.93771 * 13 11 9 16 16 H 1.08001 * 120.00007 * 0.02562 * 15 13 11 17 17 C 1.37874 * 119.99647 * 179.97438 * 15 13 11 18 18 N 1.31514 * 120.00373 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99595 * 179.72460 * 17 15 13 20 20 H 1.48500 * 109.46874 * 60.00686 * 19 17 15 21 21 H 1.48503 * 109.46697 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47374 * 300.00372 * 19 17 15 23 23 C 1.53002 * 109.47161 * 83.93728 * 13 11 9 24 24 C 1.52995 * 109.47055 * 296.29203 * 23 13 11 25 25 H 1.08999 * 109.47019 * 60.00445 * 1 2 3 26 26 H 1.08995 * 109.47344 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47607 * 300.00740 * 1 2 3 28 28 H 1.08993 * 109.47408 * 239.99665 * 2 1 3 29 29 H 1.08999 * 109.47019 * 119.99555 * 2 1 3 30 30 H 1.08993 * 109.47251 * 59.99569 * 3 2 1 31 31 H 1.08999 * 109.46809 * 299.99683 * 3 2 1 32 32 H 1.08995 * 110.37024 * 24.10956 * 6 4 3 33 33 H 1.08997 * 110.36673 * 146.44966 * 6 4 3 34 34 H 1.08999 * 110.34153 * 281.59433 * 8 7 6 35 35 H 1.09007 * 110.50849 * 159.18430 * 8 7 6 36 36 H 1.08999 * 109.46954 * 303.86252 * 12 11 9 37 37 H 1.08999 * 109.46853 * 63.85904 * 12 11 9 38 38 H 1.09000 * 109.47439 * 183.85687 * 12 11 9 39 39 H 0.96999 * 120.00274 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46834 * 56.29149 * 23 13 11 41 41 H 1.08998 * 109.46756 * 176.28777 * 23 13 11 42 42 H 1.09004 * 109.47172 * 194.71081 * 24 23 13 43 43 H 1.09000 * 109.47073 * 314.70865 * 24 23 13 44 44 H 1.09002 * 109.47269 * 74.70955 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9506 0.8194 -0.8099 6 6 4.1147 0.9548 1.3603 7 8 4.3526 2.1620 2.1165 8 6 4.9183 3.1006 1.1725 9 6 4.1113 2.8842 -0.1268 10 1 3.2889 3.5968 -0.1888 11 7 4.9850 3.0049 -1.3015 12 6 5.7435 4.2625 -1.2665 13 6 4.2128 2.8904 -2.5460 14 1 3.4104 2.1651 -2.4102 15 6 5.1196 2.4337 -3.6596 16 1 6.1649 2.2468 -3.4626 17 6 4.6145 2.2535 -4.9298 18 7 3.3415 2.4806 -5.1697 19 14 5.7402 1.6948 -6.3119 20 1 6.3276 0.3748 -5.9689 21 1 4.9590 1.5766 -7.5693 22 1 6.8285 2.6881 -6.4961 23 6 3.6142 4.2527 -2.9020 24 6 2.6230 4.6738 -1.8152 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.3757 0.3313 1.8633 33 1 5.0453 0.4046 1.2212 34 1 5.9728 2.8807 1.0053 35 1 4.7950 4.1229 1.5299 36 1 5.0522 5.1016 -1.1888 37 1 6.4108 4.2604 -0.4047 38 1 6.3303 4.3584 -2.1801 39 1 2.9861 2.3534 -6.0632 40 1 4.4115 4.9925 -2.9730 41 1 3.0966 4.1832 -3.8587 42 1 2.0099 5.4972 -2.1819 43 1 1.9825 3.8294 -1.5606 44 1 3.1702 4.9949 -0.9290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688224596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:26 Heat of formation + Delta-G solvation = -64.738786 kcal Electronic energy + Delta-G solvation = -21070.525897 eV Core-core repulsion = 18215.074168 eV Total energy + Delta-G solvation = -2855.451729 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13232 -38.50539 -36.14019 -34.74279 -32.73473 -31.82941 -30.04053 -28.52562 -26.97520 -26.47393 -24.69607 -23.32631 -21.71556 -21.16113 -20.43047 -18.36239 -17.77970 -17.05738 -16.83291 -16.24839 -15.87349 -15.58154 -15.05861 -14.97781 -14.72576 -14.30500 -13.63478 -13.59360 -13.37982 -13.23726 -13.18490 -12.88672 -12.87794 -12.74956 -12.58661 -12.30219 -12.21204 -12.03461 -11.88166 -11.65924 -11.54947 -11.47179 -11.28269 -11.12866 -10.84939 -10.58839 -10.38147 -8.68525 -8.06128 -6.15877 1.42525 1.42941 1.50474 2.44036 3.02553 3.21482 3.43802 3.68371 3.96773 3.99958 4.18759 4.21858 4.38713 4.42314 4.45121 4.46999 4.55197 4.58439 4.70602 4.72405 4.76791 4.81202 4.86406 4.94455 4.98626 5.01767 5.07159 5.11966 5.14586 5.21575 5.27380 5.36076 5.44325 5.45368 5.50034 5.63914 5.77114 5.83312 5.91275 6.34733 6.58156 6.81508 6.97825 7.52797 8.97938 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.007668 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.730727 B = 3650.516766 C = 4245.616034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.102 4.102 4 C -0.111 4.111 5 H 0.067 0.933 6 C 0.057 3.943 7 O -0.389 6.389 8 C 0.055 3.945 9 C 0.034 3.966 10 H 0.068 0.932 11 N -0.534 5.534 12 C 0.031 3.969 13 C 0.229 3.771 14 H 0.013 0.987 15 C -0.513 4.513 16 H 0.049 0.951 17 C 0.015 3.985 18 N -0.916 5.916 19 Si 0.950 3.050 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.146 4.146 24 C -0.142 4.142 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.259 0.741 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 -0.484 11.563 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.139 4.139 4 C -0.130 4.130 5 H 0.085 0.915 6 C -0.019 4.019 7 O -0.308 6.308 8 C -0.021 4.021 9 C -0.075 4.075 10 H 0.086 0.914 11 N -0.259 5.259 12 C -0.117 4.117 13 C 0.122 3.878 14 H 0.031 0.969 15 C -0.551 4.551 16 H 0.068 0.932 17 C -0.184 4.184 18 N -0.557 5.557 19 Si 0.777 3.223 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.186 4.186 24 C -0.199 4.199 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.815 -0.845 11.667 11.837 hybrid contribution 0.001 0.372 -1.668 1.709 sum -1.814 -0.474 9.999 10.173 Atomic orbital electron populations 1.21740 0.95019 1.02122 1.01675 1.21540 0.96608 0.95910 1.01888 1.21564 0.93478 0.97733 1.01162 1.22472 0.96157 0.96274 0.98129 0.91498 1.23509 1.00251 0.87662 0.90476 1.89052 1.83545 1.24513 1.33678 1.23561 0.97187 0.94112 0.87278 1.23492 0.95620 0.97142 0.91269 0.91410 1.62351 1.26931 1.34611 1.01984 1.22308 0.97484 0.90368 1.01506 1.19017 0.91282 0.91932 0.85590 0.96936 1.21414 0.95940 1.43864 0.93922 0.93235 1.25581 0.96256 0.95954 1.00604 1.69991 1.13650 1.50269 1.21756 0.85738 0.79032 0.78832 0.78736 1.20107 1.21165 1.19947 1.22081 0.97848 0.98768 0.99866 1.22051 0.99051 1.00073 0.98744 0.93941 0.91676 0.91805 0.93513 0.90447 0.91147 0.93924 0.87416 0.92334 0.91659 0.88184 0.95440 0.90971 0.93111 0.93202 0.94373 0.91829 0.93467 0.93750 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.91 71.98 0.71 -2.68 16 2 C -0.12 -3.19 5.80 30.59 0.18 -3.02 16 3 C -0.10 -3.08 4.42 30.60 0.14 -2.94 16 4 C -0.11 -3.68 2.00 -9.77 -0.02 -3.70 16 5 H 0.07 2.66 7.39 -2.39 -0.02 2.64 16 6 C 0.06 1.62 7.05 72.49 0.51 2.13 16 7 O -0.39 -11.79 11.65 -148.98 -1.74 -13.53 16 8 C 0.06 1.64 6.10 72.48 0.44 2.08 16 9 C 0.03 1.15 2.06 45.93 0.09 1.25 16 10 H 0.07 2.37 3.48 -2.39 -0.01 2.37 16 11 N -0.53 -21.68 4.37 -870.23 -3.80 -25.49 16 12 C 0.03 1.13 7.67 127.69 0.98 2.11 16 13 C 0.23 11.07 1.64 44.17 0.07 11.14 16 14 H 0.01 0.69 6.37 -2.38 -0.02 0.67 16 15 C -0.51 -27.93 8.26 25.60 0.21 -27.72 16 16 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 17 C 0.01 0.79 5.30 84.65 0.45 1.24 16 18 N -0.92 -52.02 11.30 21.45 0.24 -51.77 16 19 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 23 C -0.15 -6.74 4.71 30.59 0.14 -6.60 16 24 C -0.14 -5.37 8.06 71.98 0.58 -4.79 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.71 6.74 -2.39 -0.02 1.69 16 30 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 31 H 0.04 1.51 6.37 -2.39 -0.02 1.49 16 32 H 0.11 2.53 6.49 -2.39 -0.02 2.52 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.95 7.21 -2.39 -0.02 1.93 16 35 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.03 0.94 5.27 -2.39 -0.01 0.93 16 37 H 0.07 2.18 6.63 -2.39 -0.02 2.16 16 38 H 0.05 2.02 7.52 -2.39 -0.02 2.00 16 39 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.04 1.73 6.21 -2.39 -0.01 1.72 16 41 H 0.06 3.39 5.98 -2.39 -0.01 3.38 16 42 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.04 1.70 6.05 -2.39 -0.01 1.69 16 44 H 0.06 1.99 4.91 -2.39 -0.01 1.98 16 Total: -1.00 -58.45 319.01 2.18 -56.26 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.97 Total: 20.17 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 4.49 Total: -31.51 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -3.56 Total: -77.26 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.74 Total: -13.53 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -58.45 2.18 -56.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688224596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.477 kcal (2) G-P(sol) polarization free energy of solvation -58.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds