Wall clock time and date at job start Mon Mar 30 2020 06:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46923 * 2 1 4 4 C 1.53002 * 109.46923 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.56309 * 52.32139 * 4 3 2 6 6 C 1.54798 * 110.61090 * 289.51984 * 4 3 2 7 7 O 1.44434 * 104.85487 * 217.50773 * 6 4 3 8 8 C 1.44422 * 105.27192 * 40.46500 * 7 6 4 9 9 C 1.54480 * 104.80492 * 319.48299 * 8 7 6 10 10 H 1.09000 * 110.50814 * 142.76647 * 9 8 7 11 11 N 1.46899 * 110.51511 * 265.33748 * 9 8 7 12 12 C 1.46895 * 111.00182 * 185.54034 * 11 9 8 13 13 C 1.46905 * 110.99835 * 309.49811 * 11 9 8 14 14 H 1.08999 * 109.46646 * 58.01512 * 13 11 9 15 15 C 1.50697 * 109.46964 * 178.01403 * 13 11 9 16 16 H 1.08002 * 120.00162 * 4.91058 * 15 13 11 17 17 C 1.37878 * 119.99938 * 184.91267 * 15 13 11 18 18 N 1.31524 * 119.99945 * 195.64660 * 17 15 13 19 19 Si 1.86796 * 120.00179 * 15.64317 * 17 15 13 20 20 H 1.48502 * 109.46967 * 86.61005 * 19 17 15 21 21 H 1.48496 * 109.47554 * 206.61254 * 19 17 15 22 22 H 1.48499 * 109.47295 * 326.61452 * 19 17 15 23 23 C 1.52992 * 109.46895 * 298.01397 * 13 11 9 24 24 C 1.52995 * 109.47402 * 82.77427 * 23 13 11 25 25 H 1.09001 * 109.47512 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46844 * 299.99774 * 1 2 3 27 27 H 1.09002 * 109.47341 * 59.99804 * 1 2 3 28 28 H 1.09003 * 109.46844 * 240.00226 * 2 1 3 29 29 H 1.08997 * 109.46875 * 120.00301 * 2 1 3 30 30 H 1.09003 * 109.47176 * 60.00430 * 3 2 1 31 31 H 1.08997 * 109.47591 * 299.99862 * 3 2 1 32 32 H 1.09005 * 110.38725 * 98.63951 * 6 4 3 33 33 H 1.08994 * 110.30411 * 336.33740 * 6 4 3 34 34 H 1.09005 * 110.36861 * 200.65918 * 8 7 6 35 35 H 1.08993 * 110.37552 * 78.31953 * 8 7 6 36 36 H 1.09006 * 109.47230 * 183.95177 * 12 11 9 37 37 H 1.08994 * 109.47335 * 303.95966 * 12 11 9 38 38 H 1.09007 * 109.46950 * 63.95557 * 12 11 9 39 39 H 0.96993 * 119.99527 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.46775 * 202.77232 * 23 13 11 41 41 H 1.08999 * 109.47731 * 322.77466 * 23 13 11 42 42 H 1.09011 * 109.46960 * 42.95202 * 24 23 13 43 43 H 1.09000 * 109.47539 * 162.95249 * 24 23 13 44 44 H 1.08994 * 109.47386 * 282.95307 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9532 0.8186 -0.8068 6 6 4.1143 0.9586 1.3666 7 8 5.2812 1.7742 1.6102 8 6 4.9145 3.1020 1.1761 9 6 4.1115 2.8841 -0.1254 10 1 3.2892 3.5967 -0.1906 11 7 4.9886 3.0038 -1.2977 12 6 4.2148 2.9293 -2.5441 13 6 5.7773 4.2419 -1.2408 14 1 6.3672 4.2550 -0.3243 15 6 6.6982 4.3060 -2.4319 16 1 6.6422 3.5480 -3.1993 17 6 7.6123 5.3323 -2.5422 18 7 8.1949 5.5729 -3.6965 19 14 8.0232 6.3811 -1.0521 20 1 9.1100 5.7328 -0.2750 21 1 8.4689 7.7249 -1.5002 22 1 6.8175 6.5194 -0.1963 23 6 4.8357 5.4476 -1.2586 24 6 4.3177 5.7112 0.1566 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 4.3917 -0.0943 1.3134 33 1 3.3708 1.1170 2.1476 34 1 5.8066 3.6958 0.9766 35 1 4.2937 3.5891 1.9280 36 1 4.8948 2.9500 -3.3958 37 1 3.6402 2.0033 -2.5602 38 1 3.5351 3.7796 -2.6011 39 1 8.8377 6.2951 -3.7741 40 1 5.3749 6.3244 -1.6174 41 1 3.9946 5.2421 -1.9208 42 1 5.1387 5.6167 0.8675 43 1 3.9045 6.7184 0.2106 44 1 3.5410 4.9864 0.4002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688224615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:29 Heat of formation + Delta-G solvation = -37.430036 kcal Electronic energy + Delta-G solvation = -20962.046698 eV Core-core repulsion = 18107.779165 eV Total energy + Delta-G solvation = -2854.267533 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94243 -36.96589 -35.34398 -32.72008 -31.69443 -30.72910 -28.92311 -27.25221 -25.86460 -24.26827 -22.87685 -22.39075 -21.17691 -20.04811 -18.67322 -17.18227 -15.90381 -15.83269 -15.40120 -15.26834 -14.50472 -14.18530 -13.80176 -13.43031 -13.15547 -12.97663 -12.74404 -12.59970 -12.55841 -11.98429 -11.83298 -11.65116 -11.47458 -11.14713 -10.99754 -10.93793 -10.79651 -10.63441 -10.59333 -10.49922 -10.39061 -10.06360 -9.66495 -9.50780 -9.35390 -9.09474 -8.34737 -7.24574 -6.08546 -4.01592 3.30298 3.38519 3.41794 4.27415 4.43644 4.59601 4.76190 4.91421 5.04276 5.11817 5.16445 5.20695 5.37385 5.48250 5.54673 5.68178 5.72891 5.74355 5.76919 5.83105 5.84095 5.94570 5.99658 6.01702 6.02311 6.14075 6.16443 6.23360 6.27734 6.32196 6.45628 6.53601 6.61296 6.79821 6.83316 6.99363 7.14058 7.29870 7.63209 7.98399 8.12894 8.66436 9.02263 9.56976 11.03918 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.006337 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.152316 B = 4417.181314 C = 4678.418402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.117 4.117 5 H 0.094 0.906 6 C 0.053 3.947 7 O -0.370 6.370 8 C 0.041 3.959 9 C 0.049 3.951 10 H 0.057 0.943 11 N -0.512 5.512 12 C 0.033 3.967 13 C 0.185 3.815 14 H 0.042 0.958 15 C -0.509 4.509 16 H 0.081 0.919 17 C 0.076 3.924 18 N -0.893 5.893 19 Si 0.856 3.144 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.251 1.251 23 C -0.158 4.158 24 C -0.167 4.167 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.018 0.982 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.038 0.962 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.579 -6.668 8.869 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.136 4.136 5 H 0.112 0.888 6 C -0.024 4.024 7 O -0.288 6.288 8 C -0.035 4.035 9 C -0.060 4.060 10 H 0.074 0.926 11 N -0.235 5.235 12 C -0.115 4.115 13 C 0.078 3.922 14 H 0.059 0.941 15 C -0.546 4.546 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.530 5.530 19 Si 0.683 3.317 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.175 1.175 23 C -0.198 4.198 24 C -0.223 4.223 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.905 -7.015 8.864 17.156 hybrid contribution -0.428 1.517 0.574 1.677 sum -13.333 -5.499 9.438 17.236 Atomic orbital electron populations 1.21777 0.96137 1.01338 1.01690 1.21546 0.95521 0.97003 1.02118 1.21663 0.94404 0.96711 1.01981 1.22734 0.94627 0.97437 0.98850 0.88808 1.23458 0.88043 0.95979 0.94947 1.89135 1.35010 1.19927 1.84755 1.23950 1.00812 0.85403 0.93339 1.23221 0.94939 0.95039 0.92796 0.92553 1.62250 1.22789 1.38742 0.99759 1.22313 0.97082 0.98044 0.94078 1.19860 0.91213 0.82790 0.98375 0.94060 1.20908 1.17345 1.10882 1.05497 0.90144 1.24855 0.96050 0.96462 0.95243 1.69962 1.28939 1.30949 1.23175 0.87306 0.79805 0.79770 0.84834 1.20369 1.21644 1.17530 1.22639 1.00564 1.02092 0.94484 1.22414 1.00539 1.00149 0.99239 0.92966 0.92944 0.92799 0.91847 0.92068 0.92184 0.91756 0.89785 0.93132 0.87418 0.93019 0.90009 0.93686 0.96333 0.92711 0.91826 0.92674 0.92999 0.94237 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.19 5.82 -26.73 -0.16 -1.35 16 3 C -0.11 -1.23 4.43 -26.73 -0.12 -1.35 16 4 C -0.12 -1.64 2.28 -88.88 -0.20 -1.85 16 5 H 0.09 1.44 7.27 -51.93 -0.38 1.06 16 6 C 0.05 0.73 6.54 38.11 0.25 0.98 16 7 O -0.37 -6.57 11.65 -35.23 -0.41 -6.98 16 8 C 0.04 0.71 5.16 37.93 0.20 0.90 16 9 C 0.05 0.82 1.58 -66.14 -0.10 0.72 16 10 H 0.06 0.91 5.09 -51.93 -0.26 0.65 16 11 N -0.51 -10.36 4.57 -226.42 -1.03 -11.39 16 12 C 0.03 0.62 8.81 60.06 0.53 1.15 16 13 C 0.18 4.21 1.36 -68.87 -0.09 4.12 16 14 H 0.04 0.99 3.92 -51.93 -0.20 0.79 16 15 C -0.51 -13.91 8.46 -34.44 -0.29 -14.20 16 16 H 0.08 2.41 6.59 -52.49 -0.35 2.06 16 17 C 0.08 2.15 5.17 -17.82 -0.09 2.06 16 18 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 19 Si 0.86 20.84 25.81 -169.99 -4.39 16.45 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.25 -5.63 4.82 56.52 0.27 -5.36 16 23 C -0.16 -3.30 4.20 -26.74 -0.11 -3.42 16 24 C -0.17 -2.90 7.80 37.16 0.29 -2.61 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.56 7.64 -51.93 -0.40 0.16 16 30 H 0.06 0.64 7.97 -51.93 -0.41 0.23 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.61 7.75 -51.93 -0.40 0.20 16 34 H 0.11 2.08 4.36 -51.93 -0.23 1.86 16 35 H 0.05 0.77 7.84 -51.93 -0.41 0.36 16 36 H 0.08 1.74 6.26 -51.93 -0.33 1.42 16 37 H 0.04 0.73 7.01 -51.93 -0.36 0.37 16 38 H 0.02 0.34 5.98 -51.92 -0.31 0.03 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 40 H 0.06 1.45 5.55 -51.93 -0.29 1.16 16 41 H 0.05 1.12 5.66 -51.93 -0.29 0.83 16 42 H 0.05 0.92 6.00 -51.92 -0.31 0.60 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.84 4.50 -51.93 -0.23 0.60 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -29.41 311.22 -7.29 -36.70 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.39 Total: 2.36 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 0.46 Total: -15.75 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.26 Total: -37.46 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.41 Total: -6.98 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.39 Total: 16.45 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.41 -7.29 -36.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688224615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.727 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds