Wall clock time and date at job start Mon Mar 30 2020 06:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46923 * 2 1 4 4 C 1.53002 * 109.46923 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.56309 * 52.32139 * 4 3 2 6 6 C 1.54798 * 110.61090 * 289.51984 * 4 3 2 7 7 O 1.44434 * 104.85487 * 217.50773 * 6 4 3 8 8 C 1.44422 * 105.27192 * 40.46500 * 7 6 4 9 9 C 1.54480 * 104.80492 * 319.48299 * 8 7 6 10 10 H 1.09000 * 110.50814 * 142.76647 * 9 8 7 11 11 N 1.46899 * 110.51511 * 265.33748 * 9 8 7 12 12 C 1.46895 * 111.00182 * 185.54034 * 11 9 8 13 13 C 1.46905 * 110.99835 * 309.49811 * 11 9 8 14 14 H 1.08999 * 109.46646 * 58.01512 * 13 11 9 15 15 C 1.50697 * 109.46964 * 178.01403 * 13 11 9 16 16 H 1.08002 * 120.00162 * 4.91058 * 15 13 11 17 17 C 1.37878 * 119.99938 * 184.91267 * 15 13 11 18 18 N 1.31524 * 119.99945 * 195.64660 * 17 15 13 19 19 Si 1.86796 * 120.00179 * 15.64317 * 17 15 13 20 20 H 1.48502 * 109.46967 * 86.61005 * 19 17 15 21 21 H 1.48496 * 109.47554 * 206.61254 * 19 17 15 22 22 H 1.48499 * 109.47295 * 326.61452 * 19 17 15 23 23 C 1.52992 * 109.46895 * 298.01397 * 13 11 9 24 24 C 1.52995 * 109.47402 * 82.77427 * 23 13 11 25 25 H 1.09001 * 109.47512 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46844 * 299.99774 * 1 2 3 27 27 H 1.09002 * 109.47341 * 59.99804 * 1 2 3 28 28 H 1.09003 * 109.46844 * 240.00226 * 2 1 3 29 29 H 1.08997 * 109.46875 * 120.00301 * 2 1 3 30 30 H 1.09003 * 109.47176 * 60.00430 * 3 2 1 31 31 H 1.08997 * 109.47591 * 299.99862 * 3 2 1 32 32 H 1.09005 * 110.38725 * 98.63951 * 6 4 3 33 33 H 1.08994 * 110.30411 * 336.33740 * 6 4 3 34 34 H 1.09005 * 110.36861 * 200.65918 * 8 7 6 35 35 H 1.08993 * 110.37552 * 78.31953 * 8 7 6 36 36 H 1.09006 * 109.47230 * 183.95177 * 12 11 9 37 37 H 1.08994 * 109.47335 * 303.95966 * 12 11 9 38 38 H 1.09007 * 109.46950 * 63.95557 * 12 11 9 39 39 H 0.96993 * 119.99527 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.46775 * 202.77232 * 23 13 11 41 41 H 1.08999 * 109.47731 * 322.77466 * 23 13 11 42 42 H 1.09011 * 109.46960 * 42.95202 * 24 23 13 43 43 H 1.09000 * 109.47539 * 162.95249 * 24 23 13 44 44 H 1.08994 * 109.47386 * 282.95307 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9532 0.8186 -0.8068 6 6 4.1143 0.9586 1.3666 7 8 5.2812 1.7742 1.6102 8 6 4.9145 3.1020 1.1761 9 6 4.1115 2.8841 -0.1254 10 1 3.2892 3.5967 -0.1906 11 7 4.9886 3.0038 -1.2977 12 6 4.2148 2.9293 -2.5441 13 6 5.7773 4.2419 -1.2408 14 1 6.3672 4.2550 -0.3243 15 6 6.6982 4.3060 -2.4319 16 1 6.6422 3.5480 -3.1993 17 6 7.6123 5.3323 -2.5422 18 7 8.1949 5.5729 -3.6965 19 14 8.0232 6.3811 -1.0521 20 1 9.1100 5.7328 -0.2750 21 1 8.4689 7.7249 -1.5002 22 1 6.8175 6.5194 -0.1963 23 6 4.8357 5.4476 -1.2586 24 6 4.3177 5.7112 0.1566 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 4.3917 -0.0943 1.3134 33 1 3.3708 1.1170 2.1476 34 1 5.8066 3.6958 0.9766 35 1 4.2937 3.5891 1.9280 36 1 4.8948 2.9500 -3.3958 37 1 3.6402 2.0033 -2.5602 38 1 3.5351 3.7796 -2.6011 39 1 8.8377 6.2951 -3.7741 40 1 5.3749 6.3244 -1.6174 41 1 3.9946 5.2421 -1.9208 42 1 5.1387 5.6167 0.8675 43 1 3.9045 6.7184 0.2106 44 1 3.5410 4.9864 0.4002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688224615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:28 Heat of formation + Delta-G solvation = -57.628501 kcal Electronic energy + Delta-G solvation = -20962.922569 eV Core-core repulsion = 18107.779165 eV Total energy + Delta-G solvation = -2855.143404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26949 -38.47414 -36.27727 -34.63626 -33.28818 -31.93168 -30.25895 -29.00153 -26.83570 -25.90612 -24.20553 -23.87403 -22.22662 -21.22752 -20.27769 -19.02695 -17.31973 -17.22753 -16.85271 -16.47196 -15.97782 -15.53929 -15.13383 -14.82414 -14.60410 -14.26938 -14.13175 -13.97545 -13.62909 -13.45992 -13.22897 -13.04598 -12.72791 -12.60947 -12.39543 -12.31002 -12.26041 -12.02124 -11.90428 -11.62945 -11.52052 -11.48580 -11.30963 -11.09228 -10.96911 -10.59082 -10.46001 -8.81329 -8.27161 -6.23863 1.34708 1.39266 1.46841 2.37360 3.04477 3.10939 3.23271 3.61437 3.95163 4.02883 4.13871 4.23364 4.27174 4.35304 4.38281 4.43663 4.46501 4.52225 4.57183 4.72002 4.74910 4.78538 4.82835 4.88867 4.96144 4.96597 5.01486 5.09568 5.15890 5.19382 5.20940 5.26580 5.31282 5.37530 5.46177 5.54517 5.60644 5.67573 5.93502 6.13423 6.45079 6.78142 6.81681 7.38651 8.88822 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.006337 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.152316 B = 4417.181314 C = 4678.418402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.110 4.110 5 H 0.076 0.924 6 C 0.051 3.949 7 O -0.398 6.398 8 C 0.041 3.959 9 C 0.048 3.952 10 H 0.070 0.930 11 N -0.532 5.532 12 C 0.042 3.958 13 C 0.191 3.809 14 H 0.038 0.962 15 C -0.511 4.511 16 H 0.037 0.963 17 C 0.020 3.980 18 N -0.944 5.944 19 Si 0.918 3.082 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.219 1.219 23 C -0.155 4.155 24 C -0.160 4.160 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.041 0.959 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 -6.738 11.685 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.140 4.140 4 C -0.130 4.130 5 H 0.094 0.906 6 C -0.026 4.026 7 O -0.318 6.318 8 C -0.036 4.036 9 C -0.061 4.061 10 H 0.088 0.912 11 N -0.255 5.255 12 C -0.106 4.106 13 C 0.083 3.917 14 H 0.056 0.944 15 C -0.549 4.549 16 H 0.056 0.944 17 C -0.178 4.178 18 N -0.584 5.584 19 Si 0.742 3.258 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.141 1.141 23 C -0.194 4.194 24 C -0.217 4.217 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.444 -7.105 11.696 20.635 hybrid contribution 0.334 1.399 -0.379 1.488 sum -15.110 -5.705 11.317 19.721 Atomic orbital electron populations 1.21760 0.95118 1.01982 1.01921 1.21523 0.96362 0.95868 1.02242 1.21616 0.91980 0.97957 1.02466 1.22681 0.96562 0.95154 0.98564 0.90558 1.23674 0.87500 0.96023 0.95357 1.89104 1.37153 1.20578 1.84935 1.23946 1.00111 0.85334 0.94174 1.23337 0.94525 0.97178 0.91014 0.91230 1.62132 1.24377 1.37474 1.01524 1.22183 0.96254 0.99671 0.92509 1.19645 0.91348 0.85087 0.95654 0.94444 1.21217 1.18205 1.09334 1.06108 0.94449 1.25671 0.96007 0.98212 0.97907 1.70109 1.30334 1.32319 1.25619 0.86307 0.80475 0.77576 0.81449 1.20638 1.21767 1.14127 1.22469 0.99906 0.99867 0.97195 1.22340 1.01106 1.02031 0.96220 0.92193 0.92265 0.93027 0.92487 0.91293 0.90811 0.92125 0.88788 0.90473 0.89990 0.90058 0.93695 0.91001 0.95715 0.92786 0.94071 0.92482 0.93039 0.92307 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.96 5.82 30.59 0.18 -1.78 16 3 C -0.10 -1.94 4.43 30.59 0.14 -1.80 16 4 C -0.11 -2.80 2.28 -9.67 -0.02 -2.82 16 5 H 0.08 2.21 7.27 -2.39 -0.02 2.20 16 6 C 0.05 1.24 6.54 72.60 0.47 1.72 16 7 O -0.40 -13.27 11.65 -148.98 -1.74 -15.01 16 8 C 0.04 1.28 5.16 72.49 0.37 1.66 16 9 C 0.05 1.48 1.58 45.93 0.07 1.55 16 10 H 0.07 1.99 5.09 -2.39 -0.01 1.97 16 11 N -0.53 -21.28 4.57 -870.26 -3.97 -25.26 16 12 C 0.04 1.58 8.81 127.69 1.13 2.71 16 13 C 0.19 8.66 1.36 44.16 0.06 8.72 16 14 H 0.04 1.77 3.92 -2.39 -0.01 1.76 16 15 C -0.51 -29.02 8.46 25.60 0.22 -28.81 16 16 H 0.04 2.39 6.59 -2.91 -0.02 2.37 16 17 C 0.02 1.14 5.17 84.65 0.44 1.58 16 18 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 19 Si 0.92 43.55 25.81 68.60 1.77 45.32 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 22 H -0.22 -9.14 4.82 99.48 0.48 -8.66 16 23 C -0.15 -6.23 4.20 30.59 0.13 -6.10 16 24 C -0.16 -4.99 7.80 71.98 0.56 -4.43 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.00 7.64 -2.39 -0.02 0.99 16 30 H 0.07 1.23 7.97 -2.39 -0.02 1.21 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.08 1.50 7.75 -2.39 -0.02 1.48 16 34 H 0.08 3.02 4.36 -2.38 -0.01 3.01 16 35 H 0.08 2.07 7.84 -2.39 -0.02 2.05 16 36 H 0.04 2.01 6.26 -2.38 -0.01 1.99 16 37 H 0.07 2.28 7.01 -2.39 -0.02 2.27 16 38 H 0.02 0.89 5.98 -2.38 -0.01 0.88 16 39 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.04 1.82 5.55 -2.38 -0.01 1.81 16 41 H 0.06 2.24 5.66 -2.39 -0.01 2.23 16 42 H 0.05 1.62 6.00 -2.38 -0.01 1.61 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.08 2.02 4.50 -2.39 -0.01 2.00 16 Total: -1.00 -66.37 311.22 1.56 -64.81 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.75 Total: 18.19 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.46 Total: -29.14 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -3.68 Total: -84.18 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.74 Total: -15.01 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.77 Total: 45.32 kcal Total: -66.37 1.56 -64.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688224615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.182 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds