Wall clock time and date at job start Mon Mar 30 2020 06:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47650 * 2 1 4 4 C 1.52999 * 109.47599 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.45447 * 53.95896 * 4 3 2 6 6 C 1.54483 * 110.50914 * 291.35327 * 4 3 2 7 7 O 1.44642 * 104.69781 * 217.47399 * 6 4 3 8 8 C 1.44433 * 105.36531 * 40.34387 * 7 6 4 9 9 C 1.54471 * 104.80739 * 319.56699 * 8 7 6 10 10 H 1.08994 * 110.51505 * 265.33373 * 9 8 7 11 11 N 1.46905 * 110.62781 * 142.67446 * 9 8 7 12 12 C 1.46905 * 110.99832 * 163.85108 * 11 9 8 13 13 C 1.46904 * 110.99419 * 39.90569 * 11 9 8 14 14 H 1.09004 * 109.46905 * 306.19121 * 13 11 9 15 15 C 1.50688 * 109.47578 * 66.19673 * 13 11 9 16 16 H 1.08000 * 120.00397 * 359.97438 * 15 13 11 17 17 C 1.37881 * 120.00168 * 180.02562 * 15 13 11 18 18 N 1.31514 * 119.99660 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00047 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47171 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47218 * 119.99517 * 19 17 15 22 22 H 1.48498 * 109.46764 * 239.99632 * 19 17 15 23 23 C 1.53004 * 109.46729 * 186.20053 * 13 11 9 24 24 C 1.52998 * 109.47396 * 65.46609 * 23 13 11 25 25 H 1.09002 * 109.47283 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47040 * 299.99895 * 1 2 3 27 27 H 1.09000 * 109.47391 * 59.99409 * 1 2 3 28 28 H 1.09003 * 109.47040 * 240.00105 * 2 1 3 29 29 H 1.09000 * 109.47391 * 120.00591 * 2 1 3 30 30 H 1.09003 * 109.46814 * 59.99966 * 3 2 1 31 31 H 1.09000 * 109.47206 * 300.00705 * 3 2 1 32 32 H 1.09000 * 110.37086 * 336.20904 * 6 4 3 33 33 H 1.08998 * 110.36757 * 98.54511 * 6 4 3 34 34 H 1.09003 * 110.37080 * 200.72804 * 8 7 6 35 35 H 1.09001 * 110.46403 * 78.44901 * 8 7 6 36 36 H 1.09001 * 109.46764 * 49.56779 * 12 11 9 37 37 H 1.09002 * 109.46923 * 169.57196 * 12 11 9 38 38 H 1.09000 * 109.47043 * 289.57266 * 12 11 9 39 39 H 0.96996 * 119.99428 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47241 * 185.46750 * 23 13 11 41 41 H 1.09003 * 109.46885 * 305.46276 * 23 13 11 42 42 H 1.09004 * 109.46945 * 184.82468 * 24 23 13 43 43 H 1.09004 * 109.47109 * 304.81998 * 24 23 13 44 44 H 1.08996 * 109.47255 * 64.82260 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9506 0.8416 -0.8267 6 6 4.1119 0.9153 1.3466 7 8 5.2805 1.7245 1.6140 8 6 4.9163 3.0652 1.2190 9 6 4.1115 2.8869 -0.0874 10 1 4.7616 2.9996 -0.9549 11 7 3.0031 3.8492 -0.1478 12 6 2.4744 3.9581 -1.5141 13 6 3.4181 5.1628 0.3623 14 1 3.8422 5.0478 1.3598 15 6 4.4535 5.7551 -0.5586 16 1 4.7718 5.2101 -1.4350 17 6 4.9953 6.9924 -0.2818 18 7 4.6080 7.6559 0.7856 19 14 6.2782 7.7269 -1.4238 20 1 6.5386 6.7884 -2.5447 21 1 5.7796 9.0173 -1.9637 22 1 7.5367 7.9588 -0.6704 23 6 2.2036 6.0911 0.4285 24 6 1.2119 5.5603 1.4656 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.3694 1.0505 2.1331 33 1 4.3869 -0.1358 1.2598 34 1 5.8094 3.6627 1.0361 35 1 4.2978 3.5334 1.9848 36 1 2.2823 2.9608 -1.9099 37 1 1.5457 4.5285 -1.4999 38 1 3.2030 4.4657 -2.1462 39 1 4.9889 8.5265 0.9801 40 1 2.5266 7.0922 0.7138 41 1 1.7219 6.1294 -0.5486 42 1 0.3099 6.1721 1.4522 43 1 0.9545 4.5282 1.2273 44 1 1.6648 5.6024 2.4562 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688224627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:31 Heat of formation + Delta-G solvation = -48.069609 kcal Electronic energy + Delta-G solvation = -21080.007702 eV Core-core repulsion = 18225.278802 eV Total energy + Delta-G solvation = -2854.728899 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.56823 -36.57074 -35.05117 -32.80669 -31.42774 -30.19858 -28.43773 -26.82263 -25.60596 -24.20077 -22.89805 -22.21941 -20.91755 -19.39747 -18.57828 -16.51313 -15.92061 -15.71540 -15.08753 -14.73301 -14.27745 -13.85423 -13.65532 -13.57398 -13.09558 -12.74669 -12.54842 -12.25819 -11.99948 -11.74190 -11.54660 -11.36591 -11.10586 -11.03016 -10.88338 -10.70190 -10.60186 -10.54565 -10.30983 -10.05824 -9.90260 -9.84920 -9.65478 -9.42618 -9.26443 -8.95110 -8.35069 -7.15653 -6.01784 -4.15255 3.23561 3.32879 3.35568 4.36982 4.47968 5.02087 5.02483 5.17639 5.23081 5.25959 5.34122 5.41682 5.62330 5.85342 5.90139 5.95979 5.98649 6.01261 6.11704 6.14145 6.22668 6.28059 6.33283 6.37704 6.44468 6.50587 6.55961 6.65727 6.67764 6.73802 6.81362 6.93834 7.06870 7.13463 7.28900 7.32828 7.61445 7.73789 7.93405 8.12260 8.28520 8.43528 8.94634 9.52432 10.96926 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.007103 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.378738 B = 3940.816215 C = 4395.627299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.099 4.099 4 C -0.116 4.116 5 H 0.068 0.932 6 C 0.054 3.946 7 O -0.389 6.389 8 C 0.056 3.944 9 C 0.070 3.930 10 H 0.049 0.951 11 N -0.523 5.523 12 C 0.025 3.975 13 C 0.204 3.796 14 H 0.047 0.953 15 C -0.542 4.542 16 H 0.056 0.944 17 C 0.070 3.930 18 N -0.884 5.884 19 Si 0.884 3.116 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.111 4.111 24 C -0.140 4.140 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.092 0.908 41 H 0.032 0.968 42 H 0.024 0.976 43 H 0.049 0.951 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 -10.958 -0.914 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.136 4.136 4 C -0.135 4.135 5 H 0.086 0.914 6 C -0.023 4.023 7 O -0.308 6.308 8 C -0.020 4.020 9 C -0.039 4.039 10 H 0.067 0.933 11 N -0.247 5.247 12 C -0.123 4.123 13 C 0.098 3.902 14 H 0.064 0.936 15 C -0.581 4.581 16 H 0.074 0.926 17 C -0.133 4.133 18 N -0.522 5.522 19 Si 0.713 3.287 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.150 4.150 24 C -0.197 4.197 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.631 -11.023 -0.411 12.385 hybrid contribution 1.238 0.979 -1.320 2.057 sum -4.393 -10.044 -1.731 11.098 Atomic orbital electron populations 1.21740 0.96301 1.00739 1.01874 1.21655 0.95563 0.98367 1.01109 1.21610 0.93283 0.94473 1.04264 1.22588 0.96923 0.96595 0.97433 0.91362 1.23433 0.88032 0.95064 0.95750 1.89084 1.35388 1.20274 1.86067 1.23622 0.99864 0.83139 0.95406 1.22658 0.92175 0.91411 0.97702 0.93272 1.62617 1.30510 1.11034 1.20580 1.22404 0.99981 0.99108 0.90823 1.19454 0.92065 0.82840 0.95802 0.93563 1.21747 1.22758 1.03335 1.10279 0.92625 1.24892 0.96417 0.96962 0.95035 1.69877 1.42689 1.13898 1.25733 0.86661 0.81782 0.79193 0.81112 1.20009 1.21034 1.20998 1.21599 0.94838 1.02577 0.95964 1.21730 0.98148 1.00150 0.99674 0.93528 0.92769 0.92892 0.92825 0.92669 0.90887 0.90480 0.92569 0.90440 0.88739 0.91148 0.93434 0.92253 0.94625 0.92925 0.89013 0.94912 0.95644 0.93179 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.15 0.37 -1.20 16 2 C -0.13 -1.48 5.80 -26.74 -0.16 -1.64 16 3 C -0.10 -1.38 3.56 -26.73 -0.10 -1.47 16 4 C -0.12 -1.77 2.99 -89.05 -0.27 -2.04 16 5 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 6 C 0.05 0.82 6.45 37.94 0.24 1.07 16 7 O -0.39 -7.26 11.65 -35.23 -0.41 -7.68 16 8 C 0.06 1.10 5.89 37.93 0.22 1.33 16 9 C 0.07 1.31 2.33 -66.14 -0.15 1.16 16 10 H 0.05 1.00 7.57 -51.93 -0.39 0.61 16 11 N -0.52 -10.15 2.82 -226.41 -0.64 -10.79 16 12 C 0.03 0.46 7.91 60.07 0.48 0.94 16 13 C 0.20 4.70 1.28 -68.87 -0.09 4.61 16 14 H 0.05 1.18 5.63 -51.93 -0.29 0.88 16 15 C -0.54 -13.79 7.09 -34.44 -0.24 -14.03 16 16 H 0.06 1.45 6.07 -52.49 -0.32 1.13 16 17 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 18 N -0.88 -24.10 11.29 55.43 0.63 -23.47 16 19 Si 0.88 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.11 -2.53 5.09 -26.73 -0.14 -2.66 16 24 C -0.14 -2.74 9.86 37.16 0.37 -2.37 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.61 7.57 -51.93 -0.39 0.22 16 30 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 31 H 0.08 1.13 4.69 -51.93 -0.24 0.88 16 32 H 0.06 0.83 7.77 -51.93 -0.40 0.43 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 2.00 8.14 -51.93 -0.42 1.57 16 35 H 0.07 1.46 6.41 -51.93 -0.33 1.13 16 36 H 0.05 0.76 5.65 -51.93 -0.29 0.47 16 37 H 0.06 1.08 6.59 -51.93 -0.34 0.74 16 38 H 0.04 0.73 6.13 -51.93 -0.32 0.41 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.09 2.36 5.94 -51.93 -0.31 2.05 16 41 H 0.03 0.73 6.33 -51.93 -0.33 0.40 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.93 7.64 -51.93 -0.40 0.54 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -26.03 323.52 -7.84 -33.87 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.71 Total: 2.04 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 0.44 Total: -14.58 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.01 Total: -34.26 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.41 Total: -7.68 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.03 -7.84 -33.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688224627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.202 kcal (2) G-P(sol) polarization free energy of solvation -26.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds