Wall clock time and date at job start Mon Mar 30 2020 06:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47650 * 2 1 4 4 C 1.52999 * 109.47599 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.45447 * 53.95896 * 4 3 2 6 6 C 1.54483 * 110.50914 * 291.35327 * 4 3 2 7 7 O 1.44642 * 104.69781 * 217.47399 * 6 4 3 8 8 C 1.44433 * 105.36531 * 40.34387 * 7 6 4 9 9 C 1.54471 * 104.80739 * 319.56699 * 8 7 6 10 10 H 1.08994 * 110.51505 * 265.33373 * 9 8 7 11 11 N 1.46905 * 110.62781 * 142.67446 * 9 8 7 12 12 C 1.46905 * 110.99832 * 163.85108 * 11 9 8 13 13 C 1.46904 * 110.99419 * 39.90569 * 11 9 8 14 14 H 1.09004 * 109.46905 * 306.19121 * 13 11 9 15 15 C 1.50688 * 109.47578 * 66.19673 * 13 11 9 16 16 H 1.08000 * 120.00397 * 359.97438 * 15 13 11 17 17 C 1.37881 * 120.00168 * 180.02562 * 15 13 11 18 18 N 1.31514 * 119.99660 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00047 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47171 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47218 * 119.99517 * 19 17 15 22 22 H 1.48498 * 109.46764 * 239.99632 * 19 17 15 23 23 C 1.53004 * 109.46729 * 186.20053 * 13 11 9 24 24 C 1.52998 * 109.47396 * 65.46609 * 23 13 11 25 25 H 1.09002 * 109.47283 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47040 * 299.99895 * 1 2 3 27 27 H 1.09000 * 109.47391 * 59.99409 * 1 2 3 28 28 H 1.09003 * 109.47040 * 240.00105 * 2 1 3 29 29 H 1.09000 * 109.47391 * 120.00591 * 2 1 3 30 30 H 1.09003 * 109.46814 * 59.99966 * 3 2 1 31 31 H 1.09000 * 109.47206 * 300.00705 * 3 2 1 32 32 H 1.09000 * 110.37086 * 336.20904 * 6 4 3 33 33 H 1.08998 * 110.36757 * 98.54511 * 6 4 3 34 34 H 1.09003 * 110.37080 * 200.72804 * 8 7 6 35 35 H 1.09001 * 110.46403 * 78.44901 * 8 7 6 36 36 H 1.09001 * 109.46764 * 49.56779 * 12 11 9 37 37 H 1.09002 * 109.46923 * 169.57196 * 12 11 9 38 38 H 1.09000 * 109.47043 * 289.57266 * 12 11 9 39 39 H 0.96996 * 119.99428 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47241 * 185.46750 * 23 13 11 41 41 H 1.09003 * 109.46885 * 305.46276 * 23 13 11 42 42 H 1.09004 * 109.46945 * 184.82468 * 24 23 13 43 43 H 1.09004 * 109.47109 * 304.81998 * 24 23 13 44 44 H 1.08996 * 109.47255 * 64.82260 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9506 0.8416 -0.8267 6 6 4.1119 0.9153 1.3466 7 8 5.2805 1.7245 1.6140 8 6 4.9163 3.0652 1.2190 9 6 4.1115 2.8869 -0.0874 10 1 4.7616 2.9996 -0.9549 11 7 3.0031 3.8492 -0.1478 12 6 2.4744 3.9581 -1.5141 13 6 3.4181 5.1628 0.3623 14 1 3.8422 5.0478 1.3598 15 6 4.4535 5.7551 -0.5586 16 1 4.7718 5.2101 -1.4350 17 6 4.9953 6.9924 -0.2818 18 7 4.6080 7.6559 0.7856 19 14 6.2782 7.7269 -1.4238 20 1 6.5386 6.7884 -2.5447 21 1 5.7796 9.0173 -1.9637 22 1 7.5367 7.9588 -0.6704 23 6 2.2036 6.0911 0.4285 24 6 1.2119 5.5603 1.4656 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.3694 1.0505 2.1331 33 1 4.3869 -0.1358 1.2598 34 1 5.8094 3.6627 1.0361 35 1 4.2978 3.5334 1.9848 36 1 2.2823 2.9608 -1.9099 37 1 1.5457 4.5285 -1.4999 38 1 3.2030 4.4657 -2.1462 39 1 4.9889 8.5265 0.9801 40 1 2.5266 7.0922 0.7138 41 1 1.7219 6.1294 -0.5486 42 1 0.3099 6.1721 1.4522 43 1 0.9545 4.5282 1.2273 44 1 1.6648 5.6024 2.4562 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688224627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:31 Heat of formation + Delta-G solvation = -61.929778 kcal Electronic energy + Delta-G solvation = -21080.608724 eV Core-core repulsion = 18225.278802 eV Total energy + Delta-G solvation = -2855.329921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03506 -38.22192 -36.21992 -34.56505 -33.15961 -31.48807 -29.94690 -28.63847 -26.80337 -25.86346 -24.55024 -23.62293 -22.05124 -20.94591 -20.21819 -18.38858 -17.32673 -17.28901 -16.61538 -16.31067 -15.68010 -15.45591 -15.09324 -14.97885 -14.63260 -14.19271 -13.78458 -13.59586 -13.43474 -13.33534 -13.15339 -12.87623 -12.82184 -12.50463 -12.43721 -12.18905 -12.05111 -12.02844 -11.71376 -11.58304 -11.40469 -11.28916 -11.22766 -10.98198 -10.87057 -10.61478 -10.31199 -8.89051 -8.01021 -6.22559 1.34053 1.38637 1.46259 2.39930 3.04474 3.17238 3.51655 3.75103 3.94004 4.02736 4.30469 4.39079 4.44069 4.50886 4.54941 4.57396 4.66172 4.79606 4.87912 4.88916 4.92408 4.95421 4.96350 5.02641 5.10244 5.16114 5.19103 5.21773 5.28523 5.35230 5.45891 5.50210 5.52125 5.61904 5.66105 5.78282 5.80721 5.92378 6.09135 6.22977 6.41674 6.69637 6.98807 7.47660 8.92910 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.007103 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.378738 B = 3940.816215 C = 4395.627299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.091 4.091 4 C -0.106 4.106 5 H 0.083 0.917 6 C 0.051 3.949 7 O -0.402 6.402 8 C 0.064 3.936 9 C 0.067 3.933 10 H 0.030 0.970 11 N -0.511 5.511 12 C 0.030 3.970 13 C 0.211 3.789 14 H 0.020 0.980 15 C -0.544 4.544 16 H 0.046 0.954 17 C 0.025 3.975 18 N -0.908 5.908 19 Si 0.938 3.062 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.284 1.284 23 C -0.107 4.107 24 C -0.127 4.127 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.011 0.989 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.032 0.968 42 H 0.043 0.957 43 H 0.061 0.939 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -12.932 -1.565 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.129 4.129 4 C -0.125 4.125 5 H 0.102 0.898 6 C -0.025 4.025 7 O -0.321 6.321 8 C -0.013 4.013 9 C -0.042 4.042 10 H 0.048 0.952 11 N -0.235 5.235 12 C -0.118 4.118 13 C 0.104 3.896 14 H 0.038 0.962 15 C -0.583 4.583 16 H 0.064 0.936 17 C -0.175 4.175 18 N -0.548 5.548 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.210 1.210 23 C -0.146 4.146 24 C -0.184 4.184 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.659 -13.014 -1.069 14.657 hybrid contribution 1.563 1.539 -1.114 2.460 sum -5.096 -11.475 -2.182 12.744 Atomic orbital electron populations 1.21729 0.95560 1.01667 1.01643 1.21597 0.96173 0.96367 1.01974 1.21518 0.91925 0.96282 1.03164 1.22560 0.97986 0.93838 0.98142 0.89840 1.23681 0.87114 0.96021 0.95671 1.89066 1.37114 1.19768 1.86190 1.23344 0.98582 0.83720 0.95630 1.22705 0.91812 0.93514 0.96192 0.95179 1.62599 1.30386 1.09255 1.21252 1.22417 0.99138 1.00674 0.89586 1.19220 0.91668 0.84571 0.94099 0.96208 1.21968 1.23091 1.03179 1.10052 0.93567 1.25507 0.98135 0.97605 0.96246 1.69992 1.43711 1.14118 1.26969 0.85826 0.79765 0.78418 0.79508 1.19934 1.20761 1.21017 1.21451 0.95362 1.00912 0.96845 1.21587 0.97842 1.00961 0.98045 0.92058 0.93202 0.92981 0.91838 0.91904 0.92421 0.91052 0.92027 0.87406 0.91253 0.92592 0.90477 0.91983 0.97018 0.93061 0.92200 0.94913 0.93757 0.92021 0.95126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.91 71.98 0.71 -1.94 16 2 C -0.12 -2.39 5.80 30.59 0.18 -2.21 16 3 C -0.09 -2.30 3.56 30.59 0.11 -2.19 16 4 C -0.11 -3.00 2.99 -9.78 -0.03 -3.03 16 5 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 6 C 0.05 1.44 6.45 72.49 0.47 1.90 16 7 O -0.40 -14.73 11.65 -148.98 -1.74 -16.47 16 8 C 0.06 2.58 5.89 72.48 0.43 3.00 16 9 C 0.07 2.50 2.33 45.93 0.11 2.61 16 10 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 11 N -0.51 -19.70 2.82 -870.24 -2.45 -22.15 16 12 C 0.03 1.07 7.91 127.69 1.01 2.08 16 13 C 0.21 9.92 1.28 44.17 0.06 9.98 16 14 H 0.02 1.06 5.63 -2.39 -0.01 1.04 16 15 C -0.54 -28.30 7.09 25.60 0.18 -28.12 16 16 H 0.05 2.46 6.07 -2.91 -0.02 2.44 16 17 C 0.03 1.34 5.29 84.66 0.45 1.79 16 18 N -0.91 -50.85 11.29 21.45 0.24 -50.61 16 19 Si 0.94 43.31 29.54 68.60 2.03 45.34 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 C -0.11 -4.90 5.09 30.59 0.16 -4.75 16 24 C -0.13 -4.87 9.86 71.98 0.71 -4.16 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.14 7.57 -2.39 -0.02 1.12 16 30 H 0.06 1.65 7.86 -2.39 -0.02 1.63 16 31 H 0.07 1.88 4.69 -2.39 -0.01 1.87 16 32 H 0.06 1.68 7.77 -2.39 -0.02 1.66 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.06 2.41 6.41 -2.39 -0.02 2.39 16 36 H 0.08 2.30 5.65 -2.39 -0.01 2.29 16 37 H 0.06 2.18 6.59 -2.39 -0.02 2.16 16 38 H 0.01 0.46 6.13 -2.39 -0.01 0.45 16 39 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.06 3.15 5.94 -2.39 -0.01 3.14 16 41 H 0.03 1.46 6.33 -2.39 -0.02 1.44 16 42 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 2.20 7.64 -2.38 -0.02 2.19 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -56.45 323.52 3.56 -52.88 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.95 Total: 16.04 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 4.53 Total: -25.04 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -2.21 Total: -72.76 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -1.74 Total: -16.47 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -56.45 3.56 -52.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688224627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.046 kcal (2) G-P(sol) polarization free energy of solvation -56.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds