Wall clock time and date at job start Mon Mar 30 2020 06:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47204 * 2 1 4 4 C 1.52999 * 109.47555 * 179.97438 * 3 2 1 5 5 H 1.09008 * 110.56050 * 56.22577 * 4 3 2 6 6 C 1.54473 * 110.51129 * 293.55083 * 4 3 2 7 7 O 1.44433 * 104.89803 * 265.38564 * 6 4 3 8 8 C 1.44426 * 105.27456 * 319.43410 * 7 6 4 9 9 C 1.54479 * 104.80113 * 40.51101 * 8 7 6 10 10 H 1.08996 * 110.51050 * 94.66949 * 9 8 7 11 11 N 1.46905 * 110.50936 * 217.37914 * 9 8 7 12 12 C 1.46901 * 110.99650 * 303.69821 * 11 9 8 13 13 C 1.46900 * 111.00093 * 179.74618 * 11 9 8 14 14 C 1.52998 * 109.47301 * 189.99400 * 13 11 9 15 15 C 1.52998 * 109.47151 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.46873 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00391 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99938 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99747 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00287 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47328 * 89.99612 * 20 18 16 22 22 H 1.48492 * 109.47360 * 209.99999 * 20 18 16 23 23 H 1.48503 * 109.46821 * 329.99840 * 20 18 16 24 24 H 1.09000 * 109.47614 * 299.99981 * 1 2 3 25 25 H 1.09000 * 109.47463 * 60.00553 * 1 2 3 26 26 H 1.09008 * 109.47065 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47614 * 240.00019 * 2 1 3 28 28 H 1.09003 * 109.47076 * 119.99789 * 2 1 3 29 29 H 1.09000 * 109.46819 * 59.99532 * 3 2 1 30 30 H 1.09003 * 109.46932 * 299.99877 * 3 2 1 31 31 H 1.09006 * 110.37385 * 146.50089 * 6 4 3 32 32 H 1.09001 * 110.37828 * 24.27267 * 6 4 3 33 33 H 1.08997 * 110.37153 * 159.34410 * 8 7 6 34 34 H 1.09000 * 110.36715 * 281.68154 * 8 7 6 35 35 H 1.08998 * 109.47668 * 54.59607 * 12 11 9 36 36 H 1.08999 * 109.47093 * 174.60163 * 12 11 9 37 37 H 1.09004 * 109.47365 * 294.59523 * 12 11 9 38 38 H 1.08998 * 109.46775 * 310.00107 * 13 11 9 39 39 H 1.09003 * 109.46955 * 69.99278 * 13 11 9 40 40 H 1.09000 * 109.47345 * 300.00388 * 14 13 11 41 41 H 1.09005 * 109.46489 * 60.00116 * 14 13 11 42 42 H 1.09001 * 109.47285 * 300.00049 * 15 14 13 43 43 H 1.08993 * 109.47250 * 60.00402 * 15 14 13 44 44 H 0.96997 * 119.99905 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9532 0.8751 -0.8475 6 6 4.1107 0.8648 1.3273 7 8 4.3456 2.0170 2.1658 8 6 4.9158 3.0145 1.2908 9 6 4.1133 2.8919 -0.0234 10 1 3.2912 3.6074 -0.0371 11 7 4.9918 3.0928 -1.1836 12 6 5.6806 4.3879 -1.1042 13 6 4.2403 2.9724 -2.4401 14 6 5.2170 2.9380 -3.6173 15 6 4.4343 2.8119 -4.9258 16 6 5.3965 2.7774 -6.0852 17 1 6.4597 2.8396 -5.9067 18 6 4.9192 2.6675 -7.3741 19 7 3.6243 2.5923 -7.5916 20 14 6.1116 2.6254 -8.8113 21 1 6.4929 1.2189 -9.0973 22 1 5.4636 3.2160 -10.0097 23 1 7.3266 3.4078 -8.4694 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 5.0419 0.3251 1.1545 32 1 3.3711 0.2073 1.7843 33 1 4.7933 4.0094 1.7188 34 1 5.9704 2.8045 1.1125 35 1 6.2081 4.4612 -0.1532 36 1 6.3950 4.4702 -1.9233 37 1 4.9498 5.1933 -1.1773 38 1 3.6549 2.0531 -2.4266 39 1 3.5722 3.8270 -2.5472 40 1 5.8024 3.8573 -3.6307 41 1 5.8851 2.0833 -3.5101 42 1 3.8493 1.8924 -4.9122 43 1 3.7660 3.6662 -5.0332 44 1 3.2886 2.5145 -8.4983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688225408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:52 Heat of formation + Delta-G solvation = -70.242321 kcal Electronic energy + Delta-G solvation = -19691.543384 eV Core-core repulsion = 16835.853004 eV Total energy + Delta-G solvation = -2855.690380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05442 -36.86676 -35.33342 -33.66947 -31.66327 -30.90347 -28.62042 -27.07496 -26.13076 -25.10327 -22.73887 -22.31464 -20.42994 -20.08095 -19.77172 -16.82963 -16.29715 -16.26507 -15.41532 -15.07993 -14.67693 -14.49388 -14.31465 -13.80636 -13.54523 -13.30181 -12.81502 -12.68329 -12.29864 -12.17051 -12.08542 -11.78004 -11.44301 -11.36272 -11.21000 -11.05405 -10.94139 -10.79406 -10.58039 -10.47713 -10.42217 -10.33054 -9.75850 -9.60736 -9.32240 -9.05060 -8.33724 -8.13531 -5.99058 -4.01046 3.32600 3.38704 3.42204 3.81844 4.15285 4.42216 4.48274 4.74768 4.80691 4.97999 5.01512 5.21447 5.22890 5.33665 5.36803 5.40153 5.51444 5.54774 5.59686 5.67840 5.74911 5.77512 5.79486 5.83128 5.88704 5.95361 6.02880 6.08006 6.11202 6.22826 6.26195 6.36216 6.65449 6.68631 6.80310 7.11267 7.33135 7.35989 7.69050 7.83824 8.01357 8.44768 9.06146 9.62958 11.12415 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.004463 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.483734 B = 6272.863493 C = 7236.186519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.117 4.117 5 H 0.098 0.902 6 C 0.051 3.949 7 O -0.378 6.378 8 C 0.052 3.948 9 C 0.053 3.947 10 H 0.053 0.947 11 N -0.533 5.533 12 C 0.020 3.980 13 C 0.055 3.945 14 C -0.104 4.104 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -1.660 18.025 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.136 4.136 5 H 0.116 0.884 6 C -0.026 4.026 7 O -0.296 6.296 8 C -0.025 4.025 9 C -0.056 4.056 10 H 0.070 0.930 11 N -0.258 5.258 12 C -0.128 4.128 13 C -0.072 4.072 14 C -0.142 4.142 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.852 -2.016 18.132 18.338 hybrid contribution -0.018 0.659 -1.222 1.389 sum -1.869 -1.357 16.910 17.067 Atomic orbital electron populations 1.21766 0.95897 1.01497 1.01817 1.21582 0.95888 0.96769 1.02099 1.21649 0.93798 0.97139 1.02295 1.22654 0.95844 0.95838 0.99230 0.88366 1.23515 1.00040 0.89001 0.90040 1.89089 1.83221 1.24587 1.32748 1.23488 0.97627 0.92615 0.88790 1.23109 0.94483 0.96575 0.91437 0.92956 1.62210 1.29759 1.31987 1.01830 1.22446 0.98758 0.89174 1.02455 1.22350 0.96051 1.00422 0.88385 1.21650 0.97744 1.00754 0.94085 1.19064 0.95320 0.96984 0.90159 1.21247 0.93212 1.49919 0.91250 0.92702 1.25024 0.95056 0.95395 0.99000 1.69966 1.12089 1.50706 1.20860 0.86604 0.81187 0.78207 0.82074 1.20653 1.21265 1.19886 0.92957 0.92560 0.92856 0.91624 0.92051 0.91816 0.91531 0.92145 0.89106 0.89607 0.91148 0.91976 0.90400 0.95818 0.91016 0.95364 0.93433 0.92645 0.96665 0.96888 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.15 0.37 -1.04 16 2 C -0.13 -1.25 5.77 -26.73 -0.15 -1.40 16 3 C -0.11 -1.23 4.51 -26.73 -0.12 -1.35 16 4 C -0.12 -1.40 2.18 -88.90 -0.19 -1.60 16 5 H 0.10 1.32 6.94 -51.92 -0.36 0.95 16 6 C 0.05 0.57 7.02 37.93 0.27 0.84 16 7 O -0.38 -4.87 11.65 -35.23 -0.41 -5.28 16 8 C 0.05 0.61 5.94 37.93 0.23 0.84 16 9 C 0.05 0.68 2.49 -65.99 -0.16 0.52 16 10 H 0.05 0.69 7.74 -51.93 -0.40 0.29 16 11 N -0.53 -7.82 4.54 -232.81 -1.06 -8.88 16 12 C 0.02 0.26 9.05 60.07 0.54 0.81 16 13 C 0.05 0.95 4.76 -3.83 -0.02 0.93 16 14 C -0.10 -2.16 5.08 -26.73 -0.14 -2.30 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.55 6.48 -51.93 -0.34 0.21 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.89 6.21 -51.93 -0.32 0.57 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 35 H 0.06 0.69 6.54 -51.93 -0.34 0.35 16 36 H 0.08 1.10 6.54 -51.93 -0.34 0.76 16 37 H 0.02 0.31 8.13 -51.93 -0.42 -0.12 16 38 H 0.07 1.24 6.50 -51.93 -0.34 0.90 16 39 H 0.03 0.50 8.11 -51.93 -0.42 0.08 16 40 H 0.05 0.97 6.58 -51.93 -0.34 0.63 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -30.05 339.51 -8.78 -38.83 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -8.21 Total: -3.30 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 0.07 Total: -16.89 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.32 Total: -35.22 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.41 Total: -5.28 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.05 -8.78 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688225408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.412 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds