Wall clock time and date at job start Mon Mar 30 2020 06:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47204 * 2 1 4 4 C 1.52999 * 109.47555 * 179.97438 * 3 2 1 5 5 H 1.09008 * 110.56050 * 56.22577 * 4 3 2 6 6 C 1.54473 * 110.51129 * 293.55083 * 4 3 2 7 7 O 1.44433 * 104.89803 * 265.38564 * 6 4 3 8 8 C 1.44426 * 105.27456 * 319.43410 * 7 6 4 9 9 C 1.54479 * 104.80113 * 40.51101 * 8 7 6 10 10 H 1.08996 * 110.51050 * 94.66949 * 9 8 7 11 11 N 1.46905 * 110.50936 * 217.37914 * 9 8 7 12 12 C 1.46901 * 110.99650 * 303.69821 * 11 9 8 13 13 C 1.46900 * 111.00093 * 179.74618 * 11 9 8 14 14 C 1.52998 * 109.47301 * 189.99400 * 13 11 9 15 15 C 1.52998 * 109.47151 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.46873 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00391 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99938 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99747 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00287 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47328 * 89.99612 * 20 18 16 22 22 H 1.48492 * 109.47360 * 209.99999 * 20 18 16 23 23 H 1.48503 * 109.46821 * 329.99840 * 20 18 16 24 24 H 1.09000 * 109.47614 * 299.99981 * 1 2 3 25 25 H 1.09000 * 109.47463 * 60.00553 * 1 2 3 26 26 H 1.09008 * 109.47065 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47614 * 240.00019 * 2 1 3 28 28 H 1.09003 * 109.47076 * 119.99789 * 2 1 3 29 29 H 1.09000 * 109.46819 * 59.99532 * 3 2 1 30 30 H 1.09003 * 109.46932 * 299.99877 * 3 2 1 31 31 H 1.09006 * 110.37385 * 146.50089 * 6 4 3 32 32 H 1.09001 * 110.37828 * 24.27267 * 6 4 3 33 33 H 1.08997 * 110.37153 * 159.34410 * 8 7 6 34 34 H 1.09000 * 110.36715 * 281.68154 * 8 7 6 35 35 H 1.08998 * 109.47668 * 54.59607 * 12 11 9 36 36 H 1.08999 * 109.47093 * 174.60163 * 12 11 9 37 37 H 1.09004 * 109.47365 * 294.59523 * 12 11 9 38 38 H 1.08998 * 109.46775 * 310.00107 * 13 11 9 39 39 H 1.09003 * 109.46955 * 69.99278 * 13 11 9 40 40 H 1.09000 * 109.47345 * 300.00388 * 14 13 11 41 41 H 1.09005 * 109.46489 * 60.00116 * 14 13 11 42 42 H 1.09001 * 109.47285 * 300.00049 * 15 14 13 43 43 H 1.08993 * 109.47250 * 60.00402 * 15 14 13 44 44 H 0.96997 * 119.99905 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9532 0.8751 -0.8475 6 6 4.1107 0.8648 1.3273 7 8 4.3456 2.0170 2.1658 8 6 4.9158 3.0145 1.2908 9 6 4.1133 2.8919 -0.0234 10 1 3.2912 3.6074 -0.0371 11 7 4.9918 3.0928 -1.1836 12 6 5.6806 4.3879 -1.1042 13 6 4.2403 2.9724 -2.4401 14 6 5.2170 2.9380 -3.6173 15 6 4.4343 2.8119 -4.9258 16 6 5.3965 2.7774 -6.0852 17 1 6.4597 2.8396 -5.9067 18 6 4.9192 2.6675 -7.3741 19 7 3.6243 2.5923 -7.5916 20 14 6.1116 2.6254 -8.8113 21 1 6.4929 1.2189 -9.0973 22 1 5.4636 3.2160 -10.0097 23 1 7.3266 3.4078 -8.4694 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 5.0419 0.3251 1.1545 32 1 3.3711 0.2073 1.7843 33 1 4.7933 4.0094 1.7188 34 1 5.9704 2.8045 1.1125 35 1 6.2081 4.4612 -0.1532 36 1 6.3950 4.4702 -1.9233 37 1 4.9498 5.1933 -1.1773 38 1 3.6549 2.0531 -2.4266 39 1 3.5722 3.8270 -2.5472 40 1 5.8024 3.8573 -3.6307 41 1 5.8851 2.0833 -3.5101 42 1 3.8493 1.8924 -4.9122 43 1 3.7660 3.6662 -5.0332 44 1 3.2886 2.5145 -8.4983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688225408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:51 Heat of formation + Delta-G solvation = -88.337133 kcal Electronic energy + Delta-G solvation = -19692.328034 eV Core-core repulsion = 16835.853004 eV Total energy + Delta-G solvation = -2856.475030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05701 -38.11694 -36.21057 -35.62450 -33.43362 -31.94180 -29.87040 -28.49624 -27.08143 -26.60880 -24.16880 -23.47743 -21.72396 -21.32167 -20.95817 -18.47659 -17.84263 -17.24838 -16.55334 -16.46722 -16.06253 -15.83533 -15.55206 -14.95644 -14.75901 -14.39200 -14.25992 -13.75636 -13.64514 -13.56204 -13.30267 -12.94813 -12.91087 -12.69865 -12.55799 -12.46327 -12.22499 -12.13571 -11.98499 -11.78988 -11.49419 -11.39235 -11.29515 -11.22568 -11.08175 -10.68421 -10.55181 -9.33910 -8.20341 -6.31319 1.40023 1.41348 1.52488 2.40659 2.76530 3.12949 3.13161 3.45882 3.81949 3.89331 4.04135 4.13194 4.15847 4.28611 4.32966 4.35771 4.49393 4.54859 4.59357 4.62536 4.70963 4.74104 4.79680 4.85405 4.90354 4.91270 4.98131 5.03155 5.06616 5.08401 5.12079 5.24747 5.28117 5.38627 5.46017 5.51769 5.73134 5.73843 5.85417 6.03690 6.18604 6.27108 6.85422 7.38023 8.91637 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.004463 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.483734 B = 6272.863493 C = 7236.186519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.116 4.116 5 H 0.082 0.918 6 C 0.053 3.947 7 O -0.389 6.389 8 C 0.056 3.944 9 C 0.051 3.949 10 H 0.050 0.950 11 N -0.536 5.536 12 C 0.018 3.982 13 C 0.069 3.931 14 C -0.088 4.088 15 C 0.027 3.973 16 C -0.542 4.542 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.263 1.263 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.021 0.979 40 H 0.051 0.949 41 H 0.052 0.948 42 H -0.009 1.009 43 H -0.012 1.012 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.041 -1.734 19.033 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.135 4.135 5 H 0.100 0.900 6 C -0.023 4.023 7 O -0.308 6.308 8 C -0.021 4.021 9 C -0.057 4.057 10 H 0.068 0.932 11 N -0.261 5.261 12 C -0.130 4.130 13 C -0.059 4.059 14 C -0.126 4.126 15 C -0.011 4.011 16 C -0.580 4.580 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.187 1.187 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.009 0.991 43 H 0.007 0.993 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.853 -2.088 19.161 19.294 hybrid contribution -0.351 0.684 -1.510 1.695 sum -1.205 -1.404 17.651 17.748 Atomic orbital electron populations 1.21765 0.95360 1.02098 1.01721 1.21573 0.96366 0.95917 1.02310 1.21591 0.93206 0.97866 1.01688 1.22630 0.96356 0.95259 0.99266 0.89971 1.23575 1.00653 0.88784 0.89317 1.89083 1.83330 1.25120 1.33247 1.23510 0.97317 0.93351 0.87886 1.23174 0.94390 0.96981 0.91202 0.93203 1.62143 1.29687 1.33054 1.01177 1.22511 0.98583 0.88404 1.03493 1.22028 0.95050 1.00020 0.88754 1.21386 0.97611 1.00688 0.92954 1.18956 0.94901 0.94604 0.92612 1.21678 0.93803 1.50062 0.92441 0.92289 1.25976 0.96912 0.94716 1.02165 1.70097 1.14159 1.51409 1.21756 0.85454 0.78912 0.78652 0.78088 1.19727 1.20709 1.18736 0.92144 0.93578 0.91930 0.92627 0.90587 0.91300 0.93166 0.91811 0.87491 0.87897 0.90972 0.89354 0.91454 0.95635 0.91368 0.96081 0.93047 0.92948 0.99073 0.99328 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.96 16 2 C -0.12 -2.35 5.77 30.59 0.18 -2.17 16 3 C -0.11 -2.28 4.51 30.60 0.14 -2.14 16 4 C -0.12 -2.69 2.18 -9.68 -0.02 -2.71 16 5 H 0.08 2.19 6.94 -2.38 -0.02 2.17 16 6 C 0.05 1.09 7.02 72.48 0.51 1.60 16 7 O -0.39 -9.14 11.65 -148.98 -1.74 -10.87 16 8 C 0.06 1.20 5.94 72.48 0.43 1.63 16 9 C 0.05 1.25 2.49 46.03 0.11 1.37 16 10 H 0.05 1.26 7.74 -2.39 -0.02 1.24 16 11 N -0.54 -15.26 4.54 -890.49 -4.04 -19.30 16 12 C 0.02 0.44 9.05 127.69 1.16 1.60 16 13 C 0.07 2.41 4.76 86.30 0.41 2.82 16 14 C -0.09 -3.71 5.08 30.59 0.16 -3.56 16 15 C 0.03 1.44 4.97 29.85 0.15 1.59 16 16 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 18 C 0.00 0.00 5.46 84.66 0.46 0.46 16 19 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 20 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.21 6.48 -2.39 -0.02 1.20 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.11 1.84 6.21 -2.39 -0.01 1.82 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.53 7.53 -2.39 -0.02 1.51 16 35 H 0.09 1.74 6.54 -2.39 -0.02 1.72 16 36 H 0.07 1.82 6.54 -2.39 -0.02 1.81 16 37 H 0.03 0.63 8.13 -2.39 -0.02 0.61 16 38 H 0.07 2.42 6.50 -2.39 -0.02 2.40 16 39 H 0.02 0.76 8.11 -2.39 -0.02 0.74 16 40 H 0.05 2.10 6.58 -2.39 -0.02 2.09 16 41 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 42 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 44 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -64.07 339.51 2.09 -61.99 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.93 Total: 11.19 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 4.63 Total: -32.53 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -3.76 Total: -76.36 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.74 Total: -10.87 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.07 2.09 -61.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688225408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.349 kcal (2) G-P(sol) polarization free energy of solvation -64.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds