Wall clock time and date at job start Mon Mar 30 2020 06:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47206 * 2 1 4 4 C 1.53002 * 109.46964 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.56826 * 55.00377 * 4 3 2 6 6 C 1.54478 * 110.51325 * 292.31749 * 4 3 2 7 7 O 1.44420 * 104.80917 * 217.38183 * 6 4 3 8 8 C 1.44654 * 105.36903 * 40.43014 * 7 6 4 9 9 C 1.54479 * 104.69374 * 319.65693 * 8 7 6 10 10 H 1.08996 * 110.51067 * 265.09448 * 9 8 7 11 11 N 1.46902 * 110.50825 * 142.52102 * 9 8 7 12 12 C 1.46905 * 110.99788 * 39.45421 * 11 9 8 13 13 C 1.46899 * 111.00104 * 163.40321 * 11 9 8 14 14 C 1.52999 * 109.47121 * 170.00179 * 13 11 9 15 15 C 1.53002 * 109.46868 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47153 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99654 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00383 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00058 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00332 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47238 * 89.99925 * 20 18 16 22 22 H 1.48496 * 109.46916 * 210.00225 * 20 18 16 23 23 H 1.48505 * 109.46943 * 330.00000 * 20 18 16 24 24 H 1.08991 * 109.47148 * 60.00090 * 1 2 3 25 25 H 1.09009 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47148 * 299.99871 * 1 2 3 27 27 H 1.09002 * 109.46770 * 239.99755 * 2 1 3 28 28 H 1.09004 * 109.46855 * 120.00166 * 2 1 3 29 29 H 1.09002 * 109.47456 * 60.00174 * 3 2 1 30 30 H 1.09004 * 109.47349 * 299.99864 * 3 2 1 31 31 H 1.09008 * 110.37105 * 336.20910 * 6 4 3 32 32 H 1.09000 * 110.36977 * 98.43190 * 6 4 3 33 33 H 1.08997 * 110.50467 * 200.81928 * 8 7 6 34 34 H 1.09000 * 110.33232 * 78.41134 * 8 7 6 35 35 H 1.09005 * 109.46892 * 183.47615 * 12 11 9 36 36 H 1.08999 * 109.47166 * 303.47233 * 12 11 9 37 37 H 1.08999 * 109.47185 * 63.47533 * 12 11 9 38 38 H 1.09005 * 109.47373 * 290.00352 * 13 11 9 39 39 H 1.08999 * 109.47114 * 50.00351 * 13 11 9 40 40 H 1.08994 * 109.47590 * 300.00219 * 14 13 11 41 41 H 1.08999 * 109.47394 * 60.00445 * 14 13 11 42 42 H 1.09002 * 109.47168 * 299.99554 * 15 14 13 43 43 H 1.08999 * 109.47344 * 60.00186 * 15 14 13 44 44 H 0.97000 * 120.00434 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9526 0.8571 -0.8369 6 6 4.1119 0.8927 1.3375 7 8 5.2805 1.6931 1.6192 8 6 4.9185 3.0438 1.2487 9 6 4.1114 2.8883 -0.0593 10 1 4.7597 3.0186 -0.9258 11 7 3.0031 3.8517 -0.0978 12 6 3.4169 5.1522 0.4460 13 6 2.4771 3.9948 -1.4619 14 6 1.1790 4.8039 -1.4256 15 6 0.6308 4.9524 -2.8463 16 6 -0.6474 5.7498 -2.8108 17 1 -1.0303 6.1146 -1.8690 18 6 -1.3276 6.0146 -3.9804 19 7 -0.8612 5.5708 -5.1272 20 14 -2.9125 7.0024 -3.9363 21 1 -2.5998 8.4467 -4.0829 22 1 -3.7954 6.5716 -5.0497 23 1 -3.6020 6.7742 -2.6410 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.3694 1.0146 2.1263 32 1 4.3851 -0.1574 1.2335 33 1 5.8113 3.6442 1.0746 34 1 4.3008 3.4966 2.0243 35 1 2.5616 5.8277 0.4628 36 1 3.7944 5.0186 1.4597 37 1 4.2017 5.5752 -0.1812 38 1 3.2100 4.5114 -2.0816 39 1 2.2786 3.0081 -1.8801 40 1 0.4461 4.2874 -0.8059 41 1 1.3774 5.7907 -1.0074 42 1 1.3636 5.4688 -3.4664 43 1 0.4323 3.9654 -3.2642 44 1 -1.3398 5.7568 -5.9502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688225411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:55 Heat of formation + Delta-G solvation = -58.141193 kcal Electronic energy + Delta-G solvation = -20025.287350 eV Core-core repulsion = 17170.121714 eV Total energy + Delta-G solvation = -2855.165636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13018 -36.90645 -35.11584 -33.68555 -31.68768 -30.82548 -28.59003 -27.17123 -25.79841 -25.23598 -22.58915 -22.16569 -20.97864 -19.93854 -19.40887 -16.62084 -16.33445 -16.15202 -15.71693 -14.97465 -14.71152 -14.51098 -14.20890 -13.66255 -13.56474 -13.31514 -12.73083 -12.50318 -12.28782 -12.11435 -12.02060 -11.75281 -11.32851 -11.21897 -11.18345 -10.92557 -10.81763 -10.68383 -10.53735 -10.50570 -10.36643 -10.06484 -9.76920 -9.55926 -9.32580 -9.04931 -8.34024 -8.08475 -5.99315 -4.01363 3.32156 3.38483 3.42017 3.79134 4.19051 4.47226 4.52055 4.73720 4.84334 5.10410 5.20813 5.24885 5.30186 5.35512 5.36606 5.41841 5.55813 5.61984 5.68106 5.69963 5.77959 5.79114 5.89223 5.98314 6.00354 6.07849 6.11433 6.12954 6.28495 6.37799 6.52239 6.61830 6.66361 6.68904 6.86489 7.10731 7.32406 7.36098 7.68708 7.83256 8.01003 8.44282 9.05826 9.62752 11.12106 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.004778 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.656082 B = 5859.333075 C = 6610.088400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.104 4.104 4 C -0.111 4.111 5 H 0.077 0.923 6 C 0.053 3.947 7 O -0.381 6.381 8 C 0.047 3.953 9 C 0.050 3.950 10 H 0.055 0.945 11 N -0.527 5.527 12 C 0.014 3.986 13 C 0.050 3.950 14 C -0.103 4.103 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.442 -8.548 11.950 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.130 4.130 5 H 0.096 0.904 6 C -0.024 4.024 7 O -0.299 6.299 8 C -0.030 4.030 9 C -0.059 4.059 10 H 0.073 0.927 11 N -0.252 5.252 12 C -0.134 4.134 13 C -0.076 4.076 14 C -0.141 4.141 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.242 -8.811 12.153 17.628 hybrid contribution -0.388 0.979 -0.814 1.331 sum 8.854 -7.832 11.339 16.381 Atomic orbital electron populations 1.21754 0.95774 1.01014 1.02427 1.21613 0.96143 0.97610 1.01079 1.21665 0.92271 0.95504 1.04720 1.22555 0.97764 0.94770 0.97951 0.90429 1.23512 0.87503 0.95571 0.95800 1.89114 1.35763 1.18756 1.86304 1.23710 0.98777 0.84974 0.95523 1.23036 0.91821 0.93431 0.97606 0.92746 1.62232 1.30764 1.08632 1.23553 1.22543 1.00479 0.91183 0.99187 1.22509 0.97554 1.00977 0.86601 1.21643 0.93870 0.97728 1.00898 1.19067 0.95520 0.96929 0.90024 1.21240 1.07759 1.33583 0.93009 0.92718 1.25017 0.97759 0.96058 0.95605 1.69965 1.39592 1.46136 0.97911 0.86617 0.83538 0.80332 0.77660 1.20723 1.21243 1.19852 0.92177 0.93365 0.92798 0.92557 0.92808 0.90828 0.89847 0.92013 0.89564 0.89486 0.90946 0.90394 0.91598 0.95878 0.95394 0.90500 0.92555 0.93444 0.96938 0.96658 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.13 -1.40 5.79 -26.74 -0.15 -1.56 16 3 C -0.10 -1.31 3.55 -26.73 -0.09 -1.40 16 4 C -0.11 -1.31 3.02 -89.05 -0.27 -1.58 16 5 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 6 C 0.05 0.58 6.38 37.93 0.24 0.83 16 7 O -0.38 -4.90 11.65 -35.23 -0.41 -5.31 16 8 C 0.05 0.54 6.03 37.93 0.23 0.77 16 9 C 0.05 0.64 2.96 -66.14 -0.20 0.44 16 10 H 0.05 0.72 7.99 -51.93 -0.41 0.30 16 11 N -0.53 -7.42 3.41 -232.99 -0.80 -8.21 16 12 C 0.01 0.18 8.77 60.07 0.53 0.71 16 13 C 0.05 0.84 3.98 -3.83 -0.02 0.83 16 14 C -0.10 -2.09 5.08 -26.73 -0.14 -2.23 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 20 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.53 7.53 -51.93 -0.39 0.14 16 29 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 30 H 0.08 1.24 4.78 -51.93 -0.25 0.99 16 31 H 0.06 0.67 7.79 -51.92 -0.40 0.26 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 35 H 0.08 1.08 6.45 -51.93 -0.33 0.74 16 36 H 0.07 0.71 5.73 -51.93 -0.30 0.42 16 37 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 39 H 0.08 1.30 5.65 -51.93 -0.29 1.01 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.95 6.54 -51.93 -0.34 0.61 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -29.62 334.63 -8.57 -38.19 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -8.07 Total: -2.57 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -0.05 Total: -17.57 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: -0.06 Total: -34.43 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.41 Total: -5.31 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.62 -8.57 -38.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688225411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.954 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds