Wall clock time and date at job start Mon Mar 30 2020 06:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47206 * 2 1 4 4 C 1.53002 * 109.46964 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.56826 * 55.00377 * 4 3 2 6 6 C 1.54478 * 110.51325 * 292.31749 * 4 3 2 7 7 O 1.44420 * 104.80917 * 217.38183 * 6 4 3 8 8 C 1.44654 * 105.36903 * 40.43014 * 7 6 4 9 9 C 1.54479 * 104.69374 * 319.65693 * 8 7 6 10 10 H 1.08996 * 110.51067 * 265.09448 * 9 8 7 11 11 N 1.46902 * 110.50825 * 142.52102 * 9 8 7 12 12 C 1.46905 * 110.99788 * 39.45421 * 11 9 8 13 13 C 1.46899 * 111.00104 * 163.40321 * 11 9 8 14 14 C 1.52999 * 109.47121 * 170.00179 * 13 11 9 15 15 C 1.53002 * 109.46868 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47153 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99654 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00383 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00058 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00332 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47238 * 89.99925 * 20 18 16 22 22 H 1.48496 * 109.46916 * 210.00225 * 20 18 16 23 23 H 1.48505 * 109.46943 * 330.00000 * 20 18 16 24 24 H 1.08991 * 109.47148 * 60.00090 * 1 2 3 25 25 H 1.09009 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47148 * 299.99871 * 1 2 3 27 27 H 1.09002 * 109.46770 * 239.99755 * 2 1 3 28 28 H 1.09004 * 109.46855 * 120.00166 * 2 1 3 29 29 H 1.09002 * 109.47456 * 60.00174 * 3 2 1 30 30 H 1.09004 * 109.47349 * 299.99864 * 3 2 1 31 31 H 1.09008 * 110.37105 * 336.20910 * 6 4 3 32 32 H 1.09000 * 110.36977 * 98.43190 * 6 4 3 33 33 H 1.08997 * 110.50467 * 200.81928 * 8 7 6 34 34 H 1.09000 * 110.33232 * 78.41134 * 8 7 6 35 35 H 1.09005 * 109.46892 * 183.47615 * 12 11 9 36 36 H 1.08999 * 109.47166 * 303.47233 * 12 11 9 37 37 H 1.08999 * 109.47185 * 63.47533 * 12 11 9 38 38 H 1.09005 * 109.47373 * 290.00352 * 13 11 9 39 39 H 1.08999 * 109.47114 * 50.00351 * 13 11 9 40 40 H 1.08994 * 109.47590 * 300.00219 * 14 13 11 41 41 H 1.08999 * 109.47394 * 60.00445 * 14 13 11 42 42 H 1.09002 * 109.47168 * 299.99554 * 15 14 13 43 43 H 1.08999 * 109.47344 * 60.00186 * 15 14 13 44 44 H 0.97000 * 120.00434 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9526 0.8571 -0.8369 6 6 4.1119 0.8927 1.3375 7 8 5.2805 1.6931 1.6192 8 6 4.9185 3.0438 1.2487 9 6 4.1114 2.8883 -0.0593 10 1 4.7597 3.0186 -0.9258 11 7 3.0031 3.8517 -0.0978 12 6 3.4169 5.1522 0.4460 13 6 2.4771 3.9948 -1.4619 14 6 1.1790 4.8039 -1.4256 15 6 0.6308 4.9524 -2.8463 16 6 -0.6474 5.7498 -2.8108 17 1 -1.0303 6.1146 -1.8690 18 6 -1.3276 6.0146 -3.9804 19 7 -0.8612 5.5708 -5.1272 20 14 -2.9125 7.0024 -3.9363 21 1 -2.5998 8.4467 -4.0829 22 1 -3.7954 6.5716 -5.0497 23 1 -3.6020 6.7742 -2.6410 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.3694 1.0146 2.1263 32 1 4.3851 -0.1574 1.2335 33 1 5.8113 3.6442 1.0746 34 1 4.3008 3.4966 2.0243 35 1 2.5616 5.8277 0.4628 36 1 3.7944 5.0186 1.4597 37 1 4.2017 5.5752 -0.1812 38 1 3.2100 4.5114 -2.0816 39 1 2.2786 3.0081 -1.8801 40 1 0.4461 4.2874 -0.8059 41 1 1.3774 5.7907 -1.0074 42 1 1.3636 5.4688 -3.4664 43 1 0.4323 3.9654 -3.2642 44 1 -1.3398 5.7568 -5.9502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688225411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:54 Heat of formation + Delta-G solvation = -75.264619 kcal Electronic energy + Delta-G solvation = -20026.029878 eV Core-core repulsion = 17170.121714 eV Total energy + Delta-G solvation = -2855.908163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13170 -38.10486 -36.10697 -35.60168 -33.45584 -31.89129 -29.88648 -28.47377 -26.88086 -26.71335 -24.14889 -23.26629 -21.98617 -21.61753 -20.44626 -18.47399 -17.51228 -17.27880 -16.74030 -16.52700 -16.16584 -15.83748 -15.34568 -14.84885 -14.76111 -14.44152 -14.24444 -13.86175 -13.55728 -13.46899 -13.19807 -13.03081 -12.82877 -12.68158 -12.52736 -12.31266 -12.18193 -12.16079 -11.82882 -11.57265 -11.45766 -11.41010 -11.29794 -11.13929 -10.93176 -10.67441 -10.54460 -9.24819 -8.19768 -6.30562 1.39980 1.41127 1.52408 2.40836 2.77232 3.13613 3.15987 3.56605 3.80332 3.88479 4.10666 4.15995 4.27034 4.33441 4.35010 4.41387 4.42906 4.56847 4.62602 4.70248 4.72064 4.78287 4.84203 4.87728 4.95421 4.96599 5.04233 5.08257 5.11532 5.14336 5.20399 5.28727 5.41586 5.51584 5.53650 5.67842 5.74681 5.76660 5.87245 6.07552 6.19400 6.28164 6.86325 7.38789 8.92142 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.004778 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.656082 B = 5859.333075 C = 6610.088400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.097 4.097 4 C -0.110 4.110 5 H 0.080 0.920 6 C 0.056 3.944 7 O -0.394 6.394 8 C 0.052 3.948 9 C 0.047 3.953 10 H 0.049 0.951 11 N -0.526 5.526 12 C 0.012 3.988 13 C 0.065 3.935 14 C -0.086 4.086 15 C 0.027 3.973 16 C -0.540 4.540 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.263 1.263 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.025 0.975 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.050 0.950 42 H -0.013 1.013 43 H -0.009 1.009 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.556 -8.765 13.577 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.134 4.134 4 C -0.129 4.129 5 H 0.098 0.902 6 C -0.021 4.021 7 O -0.313 6.313 8 C -0.025 4.025 9 C -0.062 4.062 10 H 0.067 0.933 11 N -0.251 5.251 12 C -0.136 4.136 13 C -0.063 4.063 14 C -0.124 4.124 15 C -0.011 4.011 16 C -0.578 4.578 17 H 0.077 0.923 18 C -0.197 4.197 19 N -0.574 5.574 20 Si 0.787 3.213 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.187 1.187 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.005 0.995 43 H 0.009 0.991 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.366 -9.029 13.800 18.965 hybrid contribution -0.399 1.026 -1.327 1.724 sum 8.967 -8.003 12.473 17.322 Atomic orbital electron populations 1.21759 0.96310 1.01642 1.01321 1.21585 0.95624 0.96690 1.02113 1.21527 0.92861 0.96184 1.02849 1.22550 0.97075 0.94424 0.98864 0.90169 1.23577 0.87172 0.96256 0.95072 1.89108 1.36537 1.19299 1.86359 1.23731 0.99225 0.84886 0.94658 1.23102 0.91352 0.93417 0.98338 0.93281 1.62156 1.31906 1.09694 1.21306 1.22610 1.00133 0.90254 1.00565 1.22195 0.95751 0.99978 0.88348 1.21354 0.95322 0.98512 0.97163 1.18957 0.94539 0.94831 0.92733 1.21674 1.08814 1.33972 0.93372 0.92317 1.25957 1.01516 0.97118 0.95125 1.70096 1.41279 1.47385 0.98669 0.85479 0.78910 0.78785 0.78084 1.19773 1.20735 1.18744 0.94360 0.91885 0.92808 0.92317 0.90860 0.91693 0.92563 0.91522 0.87811 0.88114 0.90395 0.91540 0.89081 0.95618 0.96238 0.90803 0.92862 0.93149 0.99458 0.99078 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.72 16 2 C -0.12 -2.55 5.79 30.59 0.18 -2.37 16 3 C -0.10 -2.36 3.55 30.59 0.11 -2.25 16 4 C -0.11 -2.44 3.02 -9.78 -0.03 -2.47 16 5 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 6 C 0.06 1.09 6.38 72.48 0.46 1.55 16 7 O -0.39 -9.15 11.65 -148.98 -1.74 -10.88 16 8 C 0.05 1.07 6.03 72.48 0.44 1.51 16 9 C 0.05 1.12 2.96 45.93 0.14 1.26 16 10 H 0.05 1.24 7.99 -2.39 -0.02 1.23 16 11 N -0.53 -14.40 3.41 -891.04 -3.04 -17.44 16 12 C 0.01 0.29 8.77 127.69 1.12 1.41 16 13 C 0.06 2.21 3.98 86.30 0.34 2.55 16 14 C -0.09 -3.53 5.08 30.59 0.16 -3.37 16 15 C 0.03 1.44 4.97 29.85 0.15 1.58 16 16 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.00 0.02 5.46 84.65 0.46 0.49 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 20 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.26 7.53 -2.39 -0.02 1.24 16 29 H 0.06 1.69 7.84 -2.39 -0.02 1.67 16 30 H 0.06 1.69 4.78 -2.39 -0.01 1.68 16 31 H 0.07 1.26 7.79 -2.38 -0.02 1.24 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 1.54 6.36 -2.39 -0.02 1.52 16 35 H 0.07 1.77 6.45 -2.38 -0.02 1.75 16 36 H 0.09 1.75 5.73 -2.39 -0.01 1.74 16 37 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.02 0.69 8.12 -2.38 -0.02 0.67 16 39 H 0.07 2.58 5.65 -2.39 -0.01 2.56 16 40 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 2.03 6.54 -2.39 -0.02 2.02 16 42 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -63.63 334.63 2.94 -60.69 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.94 Total: 11.71 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 4.47 Total: -33.63 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -2.76 Total: -74.40 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -1.74 Total: -10.88 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.63 2.94 -60.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688225411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.570 kcal (2) G-P(sol) polarization free energy of solvation -63.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds